Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07950

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07940 and PGA1_c07950 are separated by 149 nucleotidesPGA1_c07950 and PGA1_c07960 are separated by 1 nucleotides PGA1_c07940: PGA1_c07940 - Uncharacterized protein conserved in bacteria, at 824,056 to 825,033 _c07940 PGA1_c07950: PGA1_c07950 - hypothetical protein, at 825,183 to 825,677 _c07950 PGA1_c07960: PGA1_c07960 - putative integral membrane protein, at 825,679 to 827,196 _c07960 Position (kb) 825 826Strain fitness (log2 ratio) -2 -1 0 1 2 3at 824.190 kb on + strand, within PGA1_c07940at 824.231 kb on - strand, within PGA1_c07940at 824.281 kb on + strand, within PGA1_c07940at 824.310 kb on + strand, within PGA1_c07940at 824.350 kb on - strand, within PGA1_c07940at 824.587 kb on + strand, within PGA1_c07940at 824.613 kb on - strand, within PGA1_c07940at 824.674 kb on + strand, within PGA1_c07940at 824.751 kb on - strand, within PGA1_c07940at 824.755 kb on + strand, within PGA1_c07940at 824.760 kb on + strand, within PGA1_c07940at 824.776 kb on + strand, within PGA1_c07940at 824.937 kb on + strandat 824.952 kb on - strandat 825.034 kb on + strandat 825.050 kb on - strandat 825.334 kb on - strand, within PGA1_c07950at 825.397 kb on - strand, within PGA1_c07950at 825.443 kb on + strand, within PGA1_c07950at 825.631 kb on + strandat 825.664 kb on + strandat 825.908 kb on + strand, within PGA1_c07960at 825.916 kb on - strand, within PGA1_c07960at 825.992 kb on - strand, within PGA1_c07960at 825.992 kb on - strand, within PGA1_c07960at 826.040 kb on + strand, within PGA1_c07960at 826.057 kb on - strand, within PGA1_c07960at 826.080 kb on + strand, within PGA1_c07960at 826.098 kb on + strand, within PGA1_c07960at 826.188 kb on + strand, within PGA1_c07960at 826.218 kb on - strand, within PGA1_c07960at 826.220 kb on + strand, within PGA1_c07960at 826.224 kb on + strand, within PGA1_c07960at 826.224 kb on + strand, within PGA1_c07960at 826.224 kb on + strand, within PGA1_c07960at 826.224 kb on + strand, within PGA1_c07960at 826.232 kb on - strand, within PGA1_c07960at 826.232 kb on - strand, within PGA1_c07960at 826.232 kb on - strand, within PGA1_c07960at 826.232 kb on - strand, within PGA1_c07960at 826.309 kb on - strand, within PGA1_c07960at 826.309 kb on - strand, within PGA1_c07960at 826.334 kb on - strand, within PGA1_c07960at 826.407 kb on + strand, within PGA1_c07960at 826.520 kb on + strand, within PGA1_c07960at 826.525 kb on + strand, within PGA1_c07960at 826.538 kb on - strand, within PGA1_c07960

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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824,190 + PGA1_c07940 0.14 -1.1
824,231 - PGA1_c07940 0.18 +0.1
824,281 + PGA1_c07940 0.23 +0.1
824,310 + PGA1_c07940 0.26 -0.9
824,350 - PGA1_c07940 0.30 +0.7
824,587 + PGA1_c07940 0.54 +0.4
824,613 - PGA1_c07940 0.57 -0.6
824,674 + PGA1_c07940 0.63 -0.7
824,751 - PGA1_c07940 0.71 -1.7
824,755 + PGA1_c07940 0.71 +3.2
824,760 + PGA1_c07940 0.72 -0.5
824,776 + PGA1_c07940 0.74 -0.7
824,937 + +0.1
824,952 - -1.8
825,034 + -1.2
825,050 - +1.0
825,334 - PGA1_c07950 0.31 -2.1
825,397 - PGA1_c07950 0.43 -0.4
825,443 + PGA1_c07950 0.53 -1.7
825,631 + -0.3
825,664 + +0.6
825,908 + PGA1_c07960 0.15 -0.5
825,916 - PGA1_c07960 0.16 +0.0
825,992 - PGA1_c07960 0.21 -0.7
825,992 - PGA1_c07960 0.21 -1.1
826,040 + PGA1_c07960 0.24 +0.9
826,057 - PGA1_c07960 0.25 -0.4
826,080 + PGA1_c07960 0.26 -0.7
826,098 + PGA1_c07960 0.28 +0.9
826,188 + PGA1_c07960 0.34 -2.5
826,218 - PGA1_c07960 0.36 -0.4
826,220 + PGA1_c07960 0.36 -1.9
826,224 + PGA1_c07960 0.36 -0.4
826,224 + PGA1_c07960 0.36 -1.0
826,224 + PGA1_c07960 0.36 +0.6
826,224 + PGA1_c07960 0.36 -0.3
826,232 - PGA1_c07960 0.36 -0.5
826,232 - PGA1_c07960 0.36 +0.4
826,232 - PGA1_c07960 0.36 +0.9
826,232 - PGA1_c07960 0.36 +1.3
826,309 - PGA1_c07960 0.42 +0.0
826,309 - PGA1_c07960 0.42 -0.7
826,334 - PGA1_c07960 0.43 -0.7
826,407 + PGA1_c07960 0.48 -1.3
826,520 + PGA1_c07960 0.55 -0.6
826,525 + PGA1_c07960 0.56 -0.1
826,538 - PGA1_c07960 0.57 +0.9

Or see this region's nucleotide sequence