Experiment: m.b. Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_674 and HP15_675 are separated by 117 nucleotides HP15_675 and HP15_676 are separated by 11 nucleotides HP15_676 and HP15_677 are separated by 3 nucleotides HP15_677 and HP15_678 are separated by 91 nucleotides HP15_678 and HP15_679 are separated by 9 nucleotides
HP15_674: HP15_674 - phage-related packaging protein, at 694,636 to 695,154
_674
HP15_675: HP15_675 - conserved hypothetical protein, at 695,272 to 695,703
_675
HP15_676: HP15_676 - N-acetylmuramoyl-L-alanine amidase, at 695,715 to 696,140
_676
HP15_677: HP15_677 - hypothetical protein, at 696,144 to 696,452
_677
HP15_678: HP15_678 - conserved hypothetical protein, at 696,544 to 697,077
_678
HP15_679: HP15_679 - conserved hypothetical protein, at 697,087 to 697,344
_679
Position (kb) 695
696
697 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 694.728 kb on - strand, within HP15_674 at 694.730 kb on + strand, within HP15_674 at 694.745 kb on + strand, within HP15_674 at 694.749 kb on - strand, within HP15_674 at 694.826 kb on + strand, within HP15_674 at 694.834 kb on - strand, within HP15_674 at 694.961 kb on + strand, within HP15_674 at 695.043 kb on - strand, within HP15_674 at 695.123 kb on - strand at 695.128 kb on - strand at 695.143 kb on - strand at 695.167 kb on - strand at 695.227 kb on + strand at 695.233 kb on + strand at 695.233 kb on - strand at 695.250 kb on - strand at 695.271 kb on + strand at 695.320 kb on - strand, within HP15_675 at 695.322 kb on + strand, within HP15_675 at 695.426 kb on - strand, within HP15_675 at 695.532 kb on + strand, within HP15_675 at 695.537 kb on + strand, within HP15_675 at 695.571 kb on - strand, within HP15_675 at 695.603 kb on + strand, within HP15_675 at 695.609 kb on + strand, within HP15_675 at 695.617 kb on - strand, within HP15_675 at 695.659 kb on - strand, within HP15_675 at 695.710 kb on + strand at 695.766 kb on - strand, within HP15_676 at 695.801 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.914 kb on - strand, within HP15_676 at 695.957 kb on + strand, within HP15_676 at 695.957 kb on - strand, within HP15_676 at 696.085 kb on + strand, within HP15_676 at 696.092 kb on + strand, within HP15_676 at 696.235 kb on + strand, within HP15_677 at 696.292 kb on - strand, within HP15_677 at 696.311 kb on - strand, within HP15_677 at 696.322 kb on - strand, within HP15_677 at 696.412 kb on - strand, within HP15_677 at 696.419 kb on - strand, within HP15_677 at 696.501 kb on + strand at 696.520 kb on - strand at 696.549 kb on + strand at 696.549 kb on + strand at 696.557 kb on - strand at 696.635 kb on + strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.736 kb on - strand, within HP15_678 at 696.784 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.797 kb on - strand, within HP15_678 at 696.914 kb on + strand, within HP15_678 at 696.935 kb on + strand, within HP15_678 at 696.994 kb on + strand, within HP15_678 at 697.021 kb on - strand, within HP15_678 at 697.022 kb on + strand, within HP15_678 at 697.084 kb on + strand at 697.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM remove 694,728 - HP15_674 0.18 +1.3 694,730 + HP15_674 0.18 -0.8 694,745 + HP15_674 0.21 +1.7 694,749 - HP15_674 0.22 +0.7 694,826 + HP15_674 0.37 +0.2 694,834 - HP15_674 0.38 +2.0 694,961 + HP15_674 0.63 +1.3 695,043 - HP15_674 0.78 +1.2 695,123 - -0.8 695,128 - -1.8 695,143 - +0.0 695,167 - +0.6 695,227 + +1.0 695,233 + +0.9 695,233 - +2.5 695,250 - -0.6 695,271 + -0.2 695,320 - HP15_675 0.11 -0.2 695,322 + HP15_675 0.12 +2.2 695,426 - HP15_675 0.36 +0.9 695,532 + HP15_675 0.60 -1.9 695,537 + HP15_675 0.61 +0.2 695,571 - HP15_675 0.69 -0.4 695,603 + HP15_675 0.77 +0.7 695,609 + HP15_675 0.78 -0.3 695,617 - HP15_675 0.80 -0.5 695,659 - HP15_675 0.90 +1.7 695,710 + +1.5 695,766 - HP15_676 0.12 +0.2 695,801 + HP15_676 0.20 +0.7 695,860 + HP15_676 0.34 +0.7 695,860 + HP15_676 0.34 +1.3 695,914 - HP15_676 0.47 -2.3 695,957 + HP15_676 0.57 +1.2 695,957 - HP15_676 0.57 +0.3 696,085 + HP15_676 0.87 +1.7 696,092 + HP15_676 0.88 +1.2 696,235 + HP15_677 0.29 +0.9 696,292 - HP15_677 0.48 +0.2 696,311 - HP15_677 0.54 +1.0 696,322 - HP15_677 0.58 +0.1 696,412 - HP15_677 0.87 -0.6 696,419 - HP15_677 0.89 +1.6 696,501 + -0.8 696,520 - +0.2 696,549 + -0.2 696,549 + +2.3 696,557 - +1.6 696,635 + HP15_678 0.17 +1.7 696,641 - HP15_678 0.18 +1.9 696,641 - HP15_678 0.18 +0.7 696,641 - HP15_678 0.18 +0.7 696,736 - HP15_678 0.36 +3.1 696,784 + HP15_678 0.45 +1.0 696,789 + HP15_678 0.46 +0.9 696,789 + HP15_678 0.46 -1.5 696,789 + HP15_678 0.46 +3.3 696,797 - HP15_678 0.47 +0.2 696,914 + HP15_678 0.69 +1.3 696,935 + HP15_678 0.73 +1.0 696,994 + HP15_678 0.84 -0.5 697,021 - HP15_678 0.89 -0.2 697,022 + HP15_678 0.90 -0.9 697,084 + +0.6 697,092 - +0.4
Or see this region's nucleotide sequence