Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05550

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05540 and PGA1_c05550 are separated by 342 nucleotidesPGA1_c05550 and PGA1_c05560 are separated by 623 nucleotides PGA1_c05540: PGA1_c05540 - transcriptional regulator, IclR family, at 565,964 to 566,782 _c05540 PGA1_c05550: PGA1_c05550 - glutamine synthase-like protein, at 567,125 to 568,576 _c05550 PGA1_c05560: PGA1_c05560 - glycine cleavage system protein GcvH, at 569,200 to 569,562 _c05560 Position (kb) 567 568 569Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 566.126 kb on + strand, within PGA1_c05540at 566.146 kb on + strand, within PGA1_c05540at 566.156 kb on - strand, within PGA1_c05540at 566.158 kb on + strand, within PGA1_c05540at 566.166 kb on - strand, within PGA1_c05540at 566.166 kb on - strand, within PGA1_c05540at 566.166 kb on - strand, within PGA1_c05540at 566.166 kb on - strand, within PGA1_c05540at 566.166 kb on - strand, within PGA1_c05540at 566.166 kb on - strand, within PGA1_c05540at 566.173 kb on - strand, within PGA1_c05540at 566.181 kb on + strand, within PGA1_c05540at 566.238 kb on + strand, within PGA1_c05540at 566.296 kb on + strand, within PGA1_c05540at 566.312 kb on + strand, within PGA1_c05540at 566.312 kb on + strand, within PGA1_c05540at 566.313 kb on + strand, within PGA1_c05540at 566.400 kb on - strand, within PGA1_c05540at 566.410 kb on - strand, within PGA1_c05540at 566.434 kb on + strand, within PGA1_c05540at 566.444 kb on - strand, within PGA1_c05540at 566.456 kb on + strand, within PGA1_c05540at 566.473 kb on - strand, within PGA1_c05540at 566.513 kb on - strand, within PGA1_c05540at 566.515 kb on + strand, within PGA1_c05540at 566.532 kb on - strand, within PGA1_c05540at 566.550 kb on - strand, within PGA1_c05540at 566.606 kb on + strand, within PGA1_c05540at 566.612 kb on + strand, within PGA1_c05540at 566.612 kb on + strand, within PGA1_c05540at 566.612 kb on + strand, within PGA1_c05540at 566.612 kb on + strand, within PGA1_c05540at 566.612 kb on + strand, within PGA1_c05540at 566.612 kb on + strand, within PGA1_c05540at 566.612 kb on + strand, within PGA1_c05540at 566.612 kb on + strand, within PGA1_c05540at 566.615 kb on - strand, within PGA1_c05540at 566.615 kb on - strand, within PGA1_c05540at 566.620 kb on - strand, within PGA1_c05540at 566.644 kb on + strand, within PGA1_c05540at 566.650 kb on + strand, within PGA1_c05540at 566.675 kb on + strand, within PGA1_c05540at 566.770 kb on - strandat 566.799 kb on + strandat 566.800 kb on + strandat 566.800 kb on + strandat 566.808 kb on - strandat 566.830 kb on + strandat 566.831 kb on + strandat 566.831 kb on + strandat 566.831 kb on + strandat 566.831 kb on + strandat 566.882 kb on + strandat 566.882 kb on + strandat 566.890 kb on - strandat 566.895 kb on - strandat 567.052 kb on - strandat 567.057 kb on - strandat 567.059 kb on - strandat 567.063 kb on + strandat 567.065 kb on + strandat 567.142 kb on - strandat 567.176 kb on + strandat 567.189 kb on - strandat 567.192 kb on + strandat 567.214 kb on + strandat 567.214 kb on + strandat 567.222 kb on - strandat 567.229 kb on + strandat 567.237 kb on + strandat 567.237 kb on - strandat 567.285 kb on - strand, within PGA1_c05550at 567.299 kb on + strand, within PGA1_c05550at 567.302 kb on - strand, within PGA1_c05550at 567.354 kb on - strand, within PGA1_c05550at 567.414 kb on + strand, within PGA1_c05550at 567.475 kb on + strand, within PGA1_c05550at 567.475 kb on + strand, within PGA1_c05550at 567.475 kb on + strand, within PGA1_c05550at 567.488 kb on + strand, within PGA1_c05550at 567.536 kb on - strand, within PGA1_c05550at 567.565 kb on - strand, within PGA1_c05550at 567.653 kb on + strand, within PGA1_c05550at 567.653 kb on + strand, within PGA1_c05550at 567.656 kb on - strand, within PGA1_c05550at 567.699 kb on + strand, within PGA1_c05550at 567.710 kb on + strand, within PGA1_c05550at 567.739 kb on + strand, within PGA1_c05550at 567.751 kb on + strand, within PGA1_c05550at 567.917 kb on - strand, within PGA1_c05550at 567.920 kb on - strand, within PGA1_c05550at 567.927 kb on - strand, within PGA1_c05550at 567.961 kb on + strand, within PGA1_c05550at 567.961 kb on + strand, within PGA1_c05550at 567.978 kb on - strand, within PGA1_c05550at 567.979 kb on - strand, within PGA1_c05550at 568.020 kb on - strand, within PGA1_c05550at 568.070 kb on + strand, within PGA1_c05550at 568.083 kb on - strand, within PGA1_c05550at 568.108 kb on + strand, within PGA1_c05550at 568.139 kb on + strand, within PGA1_c05550at 568.147 kb on - strand, within PGA1_c05550at 568.147 kb on - strand, within PGA1_c05550at 568.242 kb on - strand, within PGA1_c05550at 568.277 kb on + strand, within PGA1_c05550at 568.321 kb on - strand, within PGA1_c05550at 568.321 kb on - strand, within PGA1_c05550at 568.418 kb on + strand, within PGA1_c05550at 568.440 kb on - strandat 568.446 kb on - strandat 568.464 kb on + strandat 568.466 kb on + strandat 568.474 kb on + strandat 568.487 kb on + strandat 568.496 kb on - strandat 568.501 kb on + strandat 568.504 kb on - strandat 568.507 kb on + strandat 568.515 kb on - strandat 568.515 kb on - strandat 568.533 kb on + strandat 568.541 kb on - strandat 568.776 kb on + strandat 568.783 kb on + strandat 568.790 kb on - strandat 568.808 kb on + strandat 568.829 kb on + strandat 568.837 kb on - strandat 568.845 kb on + strandat 568.874 kb on - strandat 568.892 kb on + strandat 568.892 kb on + strandat 568.900 kb on - strandat 568.931 kb on + strandat 568.999 kb on - strandat 569.044 kb on + strandat 569.044 kb on + strandat 569.044 kb on + strandat 569.044 kb on + strandat 569.049 kb on + strandat 569.049 kb on + strandat 569.052 kb on - strandat 569.054 kb on + strandat 569.057 kb on - strandat 569.068 kb on + strandat 569.073 kb on + strandat 569.076 kb on - strandat 569.081 kb on - strandat 569.147 kb on + strandat 569.324 kb on + strand, within PGA1_c05560at 569.366 kb on - strand, within PGA1_c05560at 569.375 kb on - strand, within PGA1_c05560at 569.469 kb on - strand, within PGA1_c05560at 569.490 kb on + strand, within PGA1_c05560at 569.498 kb on - strand, within PGA1_c05560at 569.506 kb on - strand, within PGA1_c05560at 569.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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566,126 + PGA1_c05540 0.20 +0.2
566,146 + PGA1_c05540 0.22 -0.0
566,156 - PGA1_c05540 0.23 -0.2
566,158 + PGA1_c05540 0.24 +0.6
566,166 - PGA1_c05540 0.25 +1.3
566,166 - PGA1_c05540 0.25 -1.2
566,166 - PGA1_c05540 0.25 +1.5
566,166 - PGA1_c05540 0.25 -0.6
566,166 - PGA1_c05540 0.25 +1.0
566,166 - PGA1_c05540 0.25 -0.7
566,173 - PGA1_c05540 0.26 +0.4
566,181 + PGA1_c05540 0.26 +0.4
566,238 + PGA1_c05540 0.33 -1.0
566,296 + PGA1_c05540 0.41 -0.5
566,312 + PGA1_c05540 0.42 -1.0
566,312 + PGA1_c05540 0.42 -0.9
566,313 + PGA1_c05540 0.43 +2.0
566,400 - PGA1_c05540 0.53 -1.2
566,410 - PGA1_c05540 0.54 -2.5
566,434 + PGA1_c05540 0.57 -1.0
566,444 - PGA1_c05540 0.59 -1.5
566,456 + PGA1_c05540 0.60 -0.3
566,473 - PGA1_c05540 0.62 -1.1
566,513 - PGA1_c05540 0.67 -1.0
566,515 + PGA1_c05540 0.67 -1.9
566,532 - PGA1_c05540 0.69 -1.0
566,550 - PGA1_c05540 0.72 +0.3
566,606 + PGA1_c05540 0.78 -2.5
566,612 + PGA1_c05540 0.79 -2.6
566,612 + PGA1_c05540 0.79 +1.5
566,612 + PGA1_c05540 0.79 -0.6
566,612 + PGA1_c05540 0.79 -2.3
566,612 + PGA1_c05540 0.79 +2.6
566,612 + PGA1_c05540 0.79 -1.5
566,612 + PGA1_c05540 0.79 -0.3
566,612 + PGA1_c05540 0.79 -2.9
566,615 - PGA1_c05540 0.79 -1.0
566,615 - PGA1_c05540 0.79 -0.5
566,620 - PGA1_c05540 0.80 -0.2
566,644 + PGA1_c05540 0.83 -0.6
566,650 + PGA1_c05540 0.84 -0.0
566,675 + PGA1_c05540 0.87 +0.8
566,770 - +0.8
566,799 + +0.5
566,800 + +1.0
566,800 + -0.6
566,808 - -0.7
566,830 + -1.6
566,831 + -0.6
566,831 + +1.0
566,831 + -2.1
566,831 + -0.7
566,882 + -0.0
566,882 + -0.4
566,890 - +1.0
566,895 - -1.0
567,052 - -1.0
567,057 - -0.4
567,059 - -1.0
567,063 + -0.2
567,065 + -1.7
567,142 - -0.2
567,176 + +1.8
567,189 - +0.6
567,192 + -2.0
567,214 + -1.5
567,214 + -1.4
567,222 - -0.4
567,229 + -2.0
567,237 + -0.6
567,237 - +0.2
567,285 - PGA1_c05550 0.11 -0.1
567,299 + PGA1_c05550 0.12 -0.1
567,302 - PGA1_c05550 0.12 -0.5
567,354 - PGA1_c05550 0.16 -1.5
567,414 + PGA1_c05550 0.20 +0.1
567,475 + PGA1_c05550 0.24 -0.3
567,475 + PGA1_c05550 0.24 -0.0
567,475 + PGA1_c05550 0.24 -0.0
567,488 + PGA1_c05550 0.25 +1.0
567,536 - PGA1_c05550 0.28 -0.6
567,565 - PGA1_c05550 0.30 -0.6
567,653 + PGA1_c05550 0.36 -0.8
567,653 + PGA1_c05550 0.36 -1.3
567,656 - PGA1_c05550 0.37 -0.3
567,699 + PGA1_c05550 0.40 +0.1
567,710 + PGA1_c05550 0.40 -0.1
567,739 + PGA1_c05550 0.42 -0.2
567,751 + PGA1_c05550 0.43 -0.8
567,917 - PGA1_c05550 0.55 +1.0
567,920 - PGA1_c05550 0.55 +0.1
567,927 - PGA1_c05550 0.55 +1.2
567,961 + PGA1_c05550 0.58 +0.3
567,961 + PGA1_c05550 0.58 -0.7
567,978 - PGA1_c05550 0.59 -0.0
567,979 - PGA1_c05550 0.59 -0.6
568,020 - PGA1_c05550 0.62 -0.6
568,070 + PGA1_c05550 0.65 +0.8
568,083 - PGA1_c05550 0.66 -1.0
568,108 + PGA1_c05550 0.68 -1.2
568,139 + PGA1_c05550 0.70 -1.6
568,147 - PGA1_c05550 0.70 +0.3
568,147 - PGA1_c05550 0.70 -0.4
568,242 - PGA1_c05550 0.77 -3.2
568,277 + PGA1_c05550 0.79 -0.0
568,321 - PGA1_c05550 0.82 -1.0
568,321 - PGA1_c05550 0.82 +0.5
568,418 + PGA1_c05550 0.89 -0.6
568,440 - +0.2
568,446 - -0.6
568,464 + +1.2
568,466 + -0.5
568,474 + +0.8
568,487 + -0.0
568,496 - -2.7
568,501 + -0.8
568,504 - -0.2
568,507 + +0.3
568,515 - -0.6
568,515 - -1.0
568,533 + +0.3
568,541 - -0.7
568,776 + -0.0
568,783 + -1.0
568,790 - +0.6
568,808 + +1.0
568,829 + -0.6
568,837 - -1.0
568,845 + +1.3
568,874 - -0.0
568,892 + +2.0
568,892 + -0.4
568,900 - -0.7
568,931 + +1.2
568,999 - +0.1
569,044 + +0.6
569,044 + -1.3
569,044 + -0.4
569,044 + -0.3
569,049 + +0.3
569,049 + -1.6
569,052 - +0.2
569,054 + -0.6
569,057 - +0.3
569,068 + -1.4
569,073 + -0.0
569,076 - -0.7
569,081 - +0.4
569,147 + -0.5
569,324 + PGA1_c05560 0.34 -0.5
569,366 - PGA1_c05560 0.46 -0.0
569,375 - PGA1_c05560 0.48 -1.2
569,469 - PGA1_c05560 0.74 +0.7
569,490 + PGA1_c05560 0.80 -0.8
569,498 - PGA1_c05560 0.82 -0.4
569,506 - PGA1_c05560 0.84 -1.0
569,573 - -1.3

Or see this region's nucleotide sequence