Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02030 and PGA1_262p02040 are separated by 288 nucleotides PGA1_262p02040 and PGA1_262p02050 are separated by 229 nucleotides
PGA1_262p02030: PGA1_262p02030 - putative insertion sequence ATP binding protein, at 221,679 to 222,410
_262p02030
PGA1_262p02040: PGA1_262p02040 - putative transcriptional regulator, MerR family, at 222,699 to 222,842
_262p02040
PGA1_262p02050: PGA1_262p02050 - transposase, at 223,072 to 223,833
_262p02050
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.504 kb on + strand at 222.556 kb on - strand at 222.556 kb on - strand at 222.556 kb on - strand at 222.570 kb on + strand at 222.627 kb on + strand at 222.664 kb on - strand at 222.696 kb on + strand at 222.699 kb on - strand at 222.752 kb on + strand, within PGA1_262p02040 at 222.752 kb on + strand, within PGA1_262p02040 at 222.752 kb on + strand, within PGA1_262p02040 at 222.758 kb on - strand, within PGA1_262p02040 at 222.760 kb on - strand, within PGA1_262p02040 at 222.760 kb on - strand, within PGA1_262p02040 at 222.760 kb on - strand, within PGA1_262p02040 at 222.784 kb on + strand, within PGA1_262p02040 at 222.784 kb on + strand, within PGA1_262p02040 at 222.792 kb on + strand, within PGA1_262p02040 at 222.792 kb on - strand, within PGA1_262p02040 at 222.800 kb on - strand, within PGA1_262p02040 at 222.800 kb on - strand, within PGA1_262p02040 at 222.800 kb on - strand, within PGA1_262p02040 at 222.812 kb on - strand, within PGA1_262p02040 at 222.846 kb on + strand at 222.857 kb on + strand at 222.857 kb on + strand at 222.857 kb on + strand at 222.857 kb on + strand at 222.862 kb on + strand at 222.862 kb on + strand at 222.865 kb on - strand at 222.865 kb on - strand at 222.870 kb on - strand at 222.870 kb on - strand at 222.920 kb on - strand at 222.994 kb on - strand at 223.002 kb on - strand at 223.014 kb on - strand at 223.014 kb on - strand at 223.014 kb on - strand at 223.014 kb on - strand at 223.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 222,504 + -0.2 222,556 - -0.8 222,556 - +0.3 222,556 - -0.8 222,570 + -1.4 222,627 + -1.4 222,664 - +0.7 222,696 + -1.8 222,699 - +0.4 222,752 + PGA1_262p02040 0.37 -0.1 222,752 + PGA1_262p02040 0.37 +1.1 222,752 + PGA1_262p02040 0.37 -0.7 222,758 - PGA1_262p02040 0.41 -0.9 222,760 - PGA1_262p02040 0.42 +0.3 222,760 - PGA1_262p02040 0.42 -1.5 222,760 - PGA1_262p02040 0.42 -2.1 222,784 + PGA1_262p02040 0.59 -0.3 222,784 + PGA1_262p02040 0.59 +1.1 222,792 + PGA1_262p02040 0.65 +0.8 222,792 - PGA1_262p02040 0.65 -1.0 222,800 - PGA1_262p02040 0.70 -0.2 222,800 - PGA1_262p02040 0.70 -2.2 222,800 - PGA1_262p02040 0.70 -1.0 222,812 - PGA1_262p02040 0.78 -0.8 222,846 + -0.2 222,857 + -0.1 222,857 + +0.6 222,857 + +1.8 222,857 + -2.0 222,862 + -0.7 222,862 + +0.5 222,865 - -1.1 222,865 - -0.6 222,870 - +0.1 222,870 - +0.1 222,920 - +0.6 222,994 - -0.3 223,002 - -0.4 223,014 - +1.2 223,014 - +0.4 223,014 - +0.1 223,014 - +0.0 223,023 - +0.3
Or see this region's nucleotide sequence