Experiment: m.b. Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3730 and HP15_3731 are separated by 135 nucleotides HP15_3731 and HP15_3732 are separated by 281 nucleotides
HP15_3730: HP15_3730 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 3,950,858 to 3,952,411
_3730
HP15_3731: HP15_3731 - sulfide-quinone reductase, at 3,952,547 to 3,953,815
_3731
HP15_3732: HP15_3732 - metallo-beta-lactamase family protein, at 3,954,097 to 3,955,005
_3732
Position (kb)
3952
3953
3954 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3951.556 kb on - strand, within HP15_3730 at 3951.557 kb on + strand, within HP15_3730 at 3951.588 kb on + strand, within HP15_3730 at 3951.596 kb on - strand, within HP15_3730 at 3951.596 kb on - strand, within HP15_3730 at 3951.677 kb on + strand, within HP15_3730 at 3951.679 kb on + strand, within HP15_3730 at 3951.685 kb on - strand, within HP15_3730 at 3951.687 kb on - strand, within HP15_3730 at 3951.697 kb on - strand, within HP15_3730 at 3951.718 kb on - strand, within HP15_3730 at 3951.727 kb on - strand, within HP15_3730 at 3951.800 kb on + strand, within HP15_3730 at 3951.808 kb on - strand, within HP15_3730 at 3951.851 kb on + strand, within HP15_3730 at 3951.866 kb on + strand, within HP15_3730 at 3952.125 kb on - strand, within HP15_3730 at 3952.173 kb on + strand, within HP15_3730 at 3952.173 kb on + strand, within HP15_3730 at 3952.173 kb on + strand, within HP15_3730 at 3952.173 kb on + strand, within HP15_3730 at 3952.181 kb on - strand, within HP15_3730 at 3952.181 kb on - strand, within HP15_3730 at 3952.181 kb on - strand, within HP15_3730 at 3952.181 kb on - strand, within HP15_3730 at 3952.188 kb on + strand, within HP15_3730 at 3952.196 kb on - strand, within HP15_3730 at 3952.196 kb on - strand, within HP15_3730 at 3952.337 kb on - strand at 3952.594 kb on - strand at 3952.601 kb on - strand at 3952.834 kb on + strand, within HP15_3731 at 3952.900 kb on + strand, within HP15_3731 at 3952.908 kb on - strand, within HP15_3731 at 3952.908 kb on - strand, within HP15_3731 at 3952.933 kb on + strand, within HP15_3731 at 3952.983 kb on - strand, within HP15_3731 at 3953.029 kb on + strand, within HP15_3731 at 3953.089 kb on - strand, within HP15_3731 at 3953.094 kb on - strand, within HP15_3731 at 3953.124 kb on - strand, within HP15_3731 at 3953.171 kb on - strand, within HP15_3731 at 3953.213 kb on - strand, within HP15_3731 at 3953.213 kb on - strand, within HP15_3731 at 3953.245 kb on - strand, within HP15_3731 at 3953.396 kb on + strand, within HP15_3731 at 3953.431 kb on + strand, within HP15_3731 at 3953.451 kb on + strand, within HP15_3731 at 3953.480 kb on + strand, within HP15_3731 at 3953.590 kb on + strand, within HP15_3731 at 3953.598 kb on - strand, within HP15_3731 at 3953.610 kb on - strand, within HP15_3731 at 3953.637 kb on - strand, within HP15_3731 at 3953.771 kb on + strand at 3953.824 kb on + strand at 3953.824 kb on + strand at 3953.824 kb on - strand at 3953.845 kb on + strand at 3954.221 kb on - strand, within HP15_3732 at 3954.280 kb on + strand, within HP15_3732 at 3954.342 kb on + strand, within HP15_3732 at 3954.375 kb on - strand, within HP15_3732 at 3954.375 kb on - strand, within HP15_3732 at 3954.382 kb on - strand, within HP15_3732 at 3954.387 kb on + strand, within HP15_3732 at 3954.540 kb on - strand, within HP15_3732 at 3954.540 kb on - strand, within HP15_3732 at 3954.560 kb on + strand, within HP15_3732 at 3954.560 kb on + strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.588 kb on + strand, within HP15_3732 at 3954.685 kb on - strand, within HP15_3732 at 3954.701 kb on + strand, within HP15_3732 at 3954.777 kb on - strand, within HP15_3732
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM remove 3,951,556 - HP15_3730 0.45 +0.2 3,951,557 + HP15_3730 0.45 +1.2 3,951,588 + HP15_3730 0.47 -0.3 3,951,596 - HP15_3730 0.47 -0.3 3,951,596 - HP15_3730 0.47 -0.2 3,951,677 + HP15_3730 0.53 +0.9 3,951,679 + HP15_3730 0.53 +2.7 3,951,685 - HP15_3730 0.53 -0.3 3,951,687 - HP15_3730 0.53 +1.2 3,951,697 - HP15_3730 0.54 +0.3 3,951,718 - HP15_3730 0.55 +2.2 3,951,727 - HP15_3730 0.56 +1.2 3,951,800 + HP15_3730 0.61 -0.6 3,951,808 - HP15_3730 0.61 -0.0 3,951,851 + HP15_3730 0.64 -0.2 3,951,866 + HP15_3730 0.65 -0.2 3,952,125 - HP15_3730 0.82 -0.1 3,952,173 + HP15_3730 0.85 -0.1 3,952,173 + HP15_3730 0.85 +0.0 3,952,173 + HP15_3730 0.85 -0.4 3,952,173 + HP15_3730 0.85 +2.8 3,952,181 - HP15_3730 0.85 +0.2 3,952,181 - HP15_3730 0.85 -0.4 3,952,181 - HP15_3730 0.85 -1.0 3,952,181 - HP15_3730 0.85 +1.1 3,952,188 + HP15_3730 0.86 -0.3 3,952,196 - HP15_3730 0.86 -0.8 3,952,196 - HP15_3730 0.86 +0.2 3,952,337 - +0.4 3,952,594 - +1.3 3,952,601 - -1.1 3,952,834 + HP15_3731 0.23 -1.0 3,952,900 + HP15_3731 0.28 +0.4 3,952,908 - HP15_3731 0.28 +0.2 3,952,908 - HP15_3731 0.28 -0.3 3,952,933 + HP15_3731 0.30 +0.7 3,952,983 - HP15_3731 0.34 +1.0 3,953,029 + HP15_3731 0.38 -1.4 3,953,089 - HP15_3731 0.43 -1.7 3,953,094 - HP15_3731 0.43 -1.0 3,953,124 - HP15_3731 0.45 -0.1 3,953,171 - HP15_3731 0.49 -1.1 3,953,213 - HP15_3731 0.52 -2.6 3,953,213 - HP15_3731 0.52 +1.7 3,953,245 - HP15_3731 0.55 +0.3 3,953,396 + HP15_3731 0.67 +0.5 3,953,431 + HP15_3731 0.70 +0.1 3,953,451 + HP15_3731 0.71 +0.1 3,953,480 + HP15_3731 0.74 -0.5 3,953,590 + HP15_3731 0.82 +0.4 3,953,598 - HP15_3731 0.83 +0.3 3,953,610 - HP15_3731 0.84 +2.3 3,953,637 - HP15_3731 0.86 -2.5 3,953,771 + +0.7 3,953,824 + +1.3 3,953,824 + -0.6 3,953,824 - +0.2 3,953,845 + +0.7 3,954,221 - HP15_3732 0.14 -0.1 3,954,280 + HP15_3732 0.20 +0.8 3,954,342 + HP15_3732 0.27 -0.7 3,954,375 - HP15_3732 0.31 -0.3 3,954,375 - HP15_3732 0.31 -0.7 3,954,382 - HP15_3732 0.31 +0.1 3,954,387 + HP15_3732 0.32 -1.5 3,954,540 - HP15_3732 0.49 +0.3 3,954,540 - HP15_3732 0.49 -0.5 3,954,560 + HP15_3732 0.51 +0.5 3,954,560 + HP15_3732 0.51 +0.1 3,954,568 - HP15_3732 0.52 +1.7 3,954,568 - HP15_3732 0.52 +1.2 3,954,568 - HP15_3732 0.52 +0.7 3,954,588 + HP15_3732 0.54 +1.4 3,954,685 - HP15_3732 0.65 -1.7 3,954,701 + HP15_3732 0.66 -1.2 3,954,777 - HP15_3732 0.75 -0.6
Or see this region's nucleotide sequence