Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03770 and PGA1_c03780 are separated by 150 nucleotides PGA1_c03780 and PGA1_c03790 are separated by 212 nucleotides PGA1_c03790 and PGA1_c03800 are separated by 507 nucleotides
PGA1_c03770: PGA1_c03770 - hypothetical protein, at 362,055 to 362,969
_c03770
PGA1_c03780: PGA1_c03780 - succinate dehydrogenase iron-sulfur subunit, at 363,120 to 363,899
_c03780
PGA1_c03790: PGA1_c03790 - hypothetical protein, at 364,112 to 364,303
_c03790
PGA1_c03800: PGA1_c03800 - putative lysine/ornithine decarboxylase, at 364,811 to 365,992
_c03800
Position (kb) 363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 362.494 kb on + strand, within PGA1_c03770 at 362.516 kb on + strand, within PGA1_c03770 at 362.516 kb on + strand, within PGA1_c03770 at 362.630 kb on + strand, within PGA1_c03770 at 362.735 kb on + strand, within PGA1_c03770 at 362.737 kb on - strand, within PGA1_c03770 at 362.754 kb on + strand, within PGA1_c03770 at 362.766 kb on + strand, within PGA1_c03770 at 362.766 kb on + strand, within PGA1_c03770 at 362.852 kb on - strand, within PGA1_c03770 at 362.884 kb on - strand at 362.899 kb on + strand at 362.963 kb on + strand at 362.963 kb on + strand at 362.963 kb on + strand at 362.971 kb on - strand at 362.971 kb on - strand at 362.982 kb on - strand at 362.982 kb on - strand at 363.067 kb on + strand at 363.906 kb on - strand at 363.928 kb on - strand at 363.933 kb on + strand at 363.933 kb on + strand at 363.970 kb on + strand at 364.001 kb on + strand at 364.006 kb on + strand at 364.083 kb on - strand at 364.109 kb on + strand at 364.175 kb on - strand, within PGA1_c03790 at 364.176 kb on - strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.213 kb on + strand, within PGA1_c03790 at 364.219 kb on + strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.221 kb on - strand, within PGA1_c03790 at 364.292 kb on + strand at 364.350 kb on - strand at 364.441 kb on - strand at 364.441 kb on - strand at 364.483 kb on - strand at 364.488 kb on + strand at 364.488 kb on - strand at 364.488 kb on - strand at 364.528 kb on - strand at 364.598 kb on + strand at 364.601 kb on - strand at 364.606 kb on - strand at 364.677 kb on + strand at 364.724 kb on + strand at 364.731 kb on + strand at 364.733 kb on - strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.882 kb on + strand at 364.890 kb on - strand at 364.890 kb on - strand at 364.890 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 362,494 + PGA1_c03770 0.48 -0.1 362,516 + PGA1_c03770 0.50 -0.9 362,516 + PGA1_c03770 0.50 -1.4 362,630 + PGA1_c03770 0.63 -0.5 362,735 + PGA1_c03770 0.74 -3.3 362,737 - PGA1_c03770 0.75 -0.2 362,754 + PGA1_c03770 0.76 -1.3 362,766 + PGA1_c03770 0.78 -2.5 362,766 + PGA1_c03770 0.78 -2.8 362,852 - PGA1_c03770 0.87 -2.3 362,884 - -2.2 362,899 + -0.4 362,963 + +0.5 362,963 + -0.2 362,963 + -1.4 362,971 - +0.3 362,971 - -1.1 362,982 - +0.4 362,982 - -0.8 363,067 + -1.1 363,906 - +0.7 363,928 - -1.1 363,933 + -0.6 363,933 + +0.5 363,970 + -0.4 364,001 + +0.2 364,006 + +0.5 364,083 - -2.0 364,109 + -0.1 364,175 - PGA1_c03790 0.33 +1.5 364,176 - PGA1_c03790 0.33 -0.0 364,213 + PGA1_c03790 0.53 -0.1 364,213 + PGA1_c03790 0.53 +0.2 364,213 + PGA1_c03790 0.53 -1.0 364,213 + PGA1_c03790 0.53 -0.8 364,213 + PGA1_c03790 0.53 -1.1 364,213 + PGA1_c03790 0.53 -0.6 364,213 + PGA1_c03790 0.53 +1.5 364,213 + PGA1_c03790 0.53 +1.0 364,219 + PGA1_c03790 0.56 -0.5 364,221 - PGA1_c03790 0.57 +0.5 364,221 - PGA1_c03790 0.57 +1.0 364,221 - PGA1_c03790 0.57 -1.0 364,221 - PGA1_c03790 0.57 +0.2 364,221 - PGA1_c03790 0.57 -0.3 364,221 - PGA1_c03790 0.57 -0.2 364,221 - PGA1_c03790 0.57 -0.9 364,221 - PGA1_c03790 0.57 +0.3 364,292 + -0.9 364,350 - +1.4 364,441 - +0.3 364,441 - -0.5 364,483 - -1.3 364,488 + +0.7 364,488 - +0.5 364,488 - +0.8 364,528 - -0.5 364,598 + -0.6 364,601 - +0.0 364,606 - -0.1 364,677 + +0.1 364,724 + -2.1 364,731 + -1.9 364,733 - +0.9 364,882 + -0.2 364,882 + -0.1 364,882 + -0.2 364,882 + -0.5 364,890 - -1.7 364,890 - -0.5 364,890 - -2.1
Or see this region's nucleotide sequence