Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03720 and PGA1_c03730 are separated by 32 nucleotides PGA1_c03730 and PGA1_c03740 are separated by 192 nucleotides PGA1_c03740 and PGA1_c03750 are separated by 18 nucleotides PGA1_c03750 and PGA1_c03760 are separated by 15 nucleotides
PGA1_c03720: PGA1_c03720 - phosphoglycerate mutase-like protein, at 357,832 to 358,461
_c03720
PGA1_c03730: PGA1_c03730 - Protein of unknown function (DUF1194)., at 358,494 to 359,183
_c03730
PGA1_c03740: PGA1_c03740 - succinate dehydrogenase cytochrome b556 subunit, at 359,376 to 359,759
_c03740
PGA1_c03750: PGA1_c03750 - succinate dehydrogenase hydrophobic membrane anchor subunit, at 359,778 to 360,149
_c03750
PGA1_c03760: PGA1_c03760 - succinate dehydrogenase flavoprotein subunit, at 360,165 to 361,970
_c03760
Position (kb) 359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.377 kb on - strand, within PGA1_c03720 at 358.387 kb on - strand, within PGA1_c03720 at 358.388 kb on + strand, within PGA1_c03720 at 358.388 kb on + strand, within PGA1_c03720 at 358.396 kb on + strand, within PGA1_c03720 at 358.398 kb on + strand, within PGA1_c03720 at 358.406 kb on - strand at 358.406 kb on - strand at 358.440 kb on - strand at 358.456 kb on + strand at 358.456 kb on + strand at 358.456 kb on + strand at 358.461 kb on + strand at 358.464 kb on - strand at 358.464 kb on - strand at 358.530 kb on + strand at 358.546 kb on - strand at 358.555 kb on + strand at 358.555 kb on + strand at 358.555 kb on + strand at 358.555 kb on + strand at 358.563 kb on - strand, within PGA1_c03730 at 358.568 kb on - strand, within PGA1_c03730 at 358.586 kb on + strand, within PGA1_c03730 at 358.589 kb on - strand, within PGA1_c03730 at 358.613 kb on + strand, within PGA1_c03730 at 358.623 kb on - strand, within PGA1_c03730 at 358.625 kb on + strand, within PGA1_c03730 at 358.625 kb on + strand, within PGA1_c03730 at 358.632 kb on + strand, within PGA1_c03730 at 358.633 kb on - strand, within PGA1_c03730 at 358.633 kb on - strand, within PGA1_c03730 at 358.633 kb on - strand, within PGA1_c03730 at 358.652 kb on + strand, within PGA1_c03730 at 358.665 kb on + strand, within PGA1_c03730 at 358.671 kb on + strand, within PGA1_c03730 at 358.671 kb on + strand, within PGA1_c03730 at 358.679 kb on - strand, within PGA1_c03730 at 358.679 kb on - strand, within PGA1_c03730 at 358.679 kb on - strand, within PGA1_c03730 at 358.763 kb on + strand, within PGA1_c03730 at 358.770 kb on + strand, within PGA1_c03730 at 358.778 kb on - strand, within PGA1_c03730 at 358.825 kb on - strand, within PGA1_c03730 at 358.834 kb on + strand, within PGA1_c03730 at 358.840 kb on - strand, within PGA1_c03730 at 358.842 kb on - strand, within PGA1_c03730 at 358.853 kb on + strand, within PGA1_c03730 at 358.866 kb on - strand, within PGA1_c03730 at 358.876 kb on - strand, within PGA1_c03730 at 358.881 kb on + strand, within PGA1_c03730 at 358.897 kb on - strand, within PGA1_c03730 at 358.943 kb on - strand, within PGA1_c03730 at 358.944 kb on - strand, within PGA1_c03730 at 358.944 kb on - strand, within PGA1_c03730 at 358.999 kb on + strand, within PGA1_c03730 at 358.999 kb on + strand, within PGA1_c03730 at 358.999 kb on + strand, within PGA1_c03730 at 359.017 kb on - strand, within PGA1_c03730 at 359.053 kb on - strand, within PGA1_c03730 at 359.065 kb on + strand, within PGA1_c03730 at 359.065 kb on + strand, within PGA1_c03730 at 359.070 kb on - strand, within PGA1_c03730 at 359.073 kb on - strand, within PGA1_c03730 at 359.086 kb on + strand, within PGA1_c03730 at 359.094 kb on - strand, within PGA1_c03730 at 359.094 kb on - strand, within PGA1_c03730 at 359.106 kb on - strand, within PGA1_c03730 at 359.139 kb on - strand at 359.159 kb on - strand at 359.161 kb on + strand at 359.161 kb on + strand at 359.161 kb on + strand at 359.169 kb on - strand at 359.169 kb on - strand at 359.169 kb on - strand at 359.203 kb on - strand at 359.758 kb on + strand at 360.126 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 358,377 - PGA1_c03720 0.87 +0.2 358,387 - PGA1_c03720 0.88 +1.0 358,388 + PGA1_c03720 0.88 -1.5 358,388 + PGA1_c03720 0.88 -1.3 358,396 + PGA1_c03720 0.90 +1.7 358,398 + PGA1_c03720 0.90 +0.7 358,406 - +0.1 358,406 - -1.5 358,440 - +0.1 358,456 + -1.8 358,456 + +1.8 358,456 + +0.4 358,461 + -1.4 358,464 - +0.8 358,464 - -0.9 358,530 + -0.5 358,546 - +0.2 358,555 + +2.3 358,555 + +1.9 358,555 + -1.2 358,555 + -0.5 358,563 - PGA1_c03730 0.10 -0.1 358,568 - PGA1_c03730 0.11 -1.8 358,586 + PGA1_c03730 0.13 -0.4 358,589 - PGA1_c03730 0.14 +1.5 358,613 + PGA1_c03730 0.17 +0.1 358,623 - PGA1_c03730 0.19 +1.9 358,625 + PGA1_c03730 0.19 +1.1 358,625 + PGA1_c03730 0.19 -2.8 358,632 + PGA1_c03730 0.20 +2.2 358,633 - PGA1_c03730 0.20 +0.3 358,633 - PGA1_c03730 0.20 -0.2 358,633 - PGA1_c03730 0.20 -0.3 358,652 + PGA1_c03730 0.23 +0.0 358,665 + PGA1_c03730 0.25 +0.2 358,671 + PGA1_c03730 0.26 +1.7 358,671 + PGA1_c03730 0.26 +0.5 358,679 - PGA1_c03730 0.27 -0.8 358,679 - PGA1_c03730 0.27 -2.3 358,679 - PGA1_c03730 0.27 -1.7 358,763 + PGA1_c03730 0.39 -0.4 358,770 + PGA1_c03730 0.40 +0.0 358,778 - PGA1_c03730 0.41 +0.9 358,825 - PGA1_c03730 0.48 +0.9 358,834 + PGA1_c03730 0.49 +0.1 358,840 - PGA1_c03730 0.50 +0.6 358,842 - PGA1_c03730 0.50 -0.3 358,853 + PGA1_c03730 0.52 +0.8 358,866 - PGA1_c03730 0.54 -1.2 358,876 - PGA1_c03730 0.55 +0.5 358,881 + PGA1_c03730 0.56 -1.7 358,897 - PGA1_c03730 0.58 +1.1 358,943 - PGA1_c03730 0.65 -1.1 358,944 - PGA1_c03730 0.65 -2.3 358,944 - PGA1_c03730 0.65 +1.3 358,999 + PGA1_c03730 0.73 -0.5 358,999 + PGA1_c03730 0.73 +0.1 358,999 + PGA1_c03730 0.73 -1.8 359,017 - PGA1_c03730 0.76 -1.1 359,053 - PGA1_c03730 0.81 -0.2 359,065 + PGA1_c03730 0.83 -1.9 359,065 + PGA1_c03730 0.83 +0.4 359,070 - PGA1_c03730 0.83 +1.3 359,073 - PGA1_c03730 0.84 -1.2 359,086 + PGA1_c03730 0.86 -0.3 359,094 - PGA1_c03730 0.87 +0.6 359,094 - PGA1_c03730 0.87 +1.1 359,106 - PGA1_c03730 0.89 -1.5 359,139 - -0.3 359,159 - +0.5 359,161 + +1.4 359,161 + -0.6 359,161 + +0.6 359,169 - +0.1 359,169 - -1.6 359,169 - -1.3 359,203 - -1.7 359,758 + -1.1 360,126 + -3.2
Or see this region's nucleotide sequence