Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c36100

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,774,381	+		PGA1_c36090	0.35	-4.2
3,774,389	-		PGA1_c36090	0.36	-2.9
3,774,389	-		PGA1_c36090	0.36	-1.8
3,774,389	-		PGA1_c36090	0.36	-3.0
3,774,389	-		PGA1_c36090	0.36	-2.9
3,774,394	+		PGA1_c36090	0.36	-3.7
3,774,397	-		PGA1_c36090	0.36	-1.0
3,774,416	+		PGA1_c36090	0.38	-1.8
3,774,421	+		PGA1_c36090	0.38	-3.8
3,774,424	-		PGA1_c36090	0.38	-4.1
3,774,426	+		PGA1_c36090	0.38	-3.0
3,774,431	+		PGA1_c36090	0.39	-2.1
3,774,455	-		PGA1_c36090	0.40	-0.8
3,774,534	+		PGA1_c36090	0.46	-3.1
3,774,534	+		PGA1_c36090	0.46	-1.4
3,774,534	+		PGA1_c36090	0.46	-2.5
3,774,534	+		PGA1_c36090	0.46	-3.0
3,774,539	+		PGA1_c36090	0.46	-5.0
3,774,605	-		PGA1_c36090	0.51	-3.6
3,774,736	-		PGA1_c36090	0.60	-3.5
3,774,777	+		PGA1_c36090	0.63	-4.3
3,774,777	+		PGA1_c36090	0.63	-2.5
3,774,777	+		PGA1_c36090	0.63	-4.8
3,774,785	-		PGA1_c36090	0.63	-2.1
3,774,785	-		PGA1_c36090	0.63	-1.3
3,774,787	+		PGA1_c36090	0.63	-3.2
3,774,877	-		PGA1_c36090	0.70	-3.3
3,774,953	+		PGA1_c36090	0.75	-1.7
3,774,953	+		PGA1_c36090	0.75	-3.1
3,774,953	+		PGA1_c36090	0.75	-3.0
3,774,961	-		PGA1_c36090	0.75	-5.4
3,775,000	-		PGA1_c36090	0.78	-3.0
3,775,015	+		PGA1_c36090	0.79	-6.4
3,775,072	-		PGA1_c36090	0.83	-2.7
3,775,126	-		PGA1_c36090	0.87	-2.8
3,775,192	+				-4.4
3,775,195	+				-3.7
3,775,244	+				-3.3
3,775,252	-				-3.8
3,775,269	+				-2.9
3,775,311	+				-2.9
3,775,335	-				-2.3
3,775,355	-				-3.9
3,775,379	-				-0.7
3,775,418	+				-2.6
3,775,477	-				-1.8
3,775,483	+				-1.7
3,775,483	+				-3.7
3,775,483	+				-2.1
3,775,491	-				-1.8
3,775,491	-				-3.1
3,775,529	+				-3.8
3,775,537	-				-1.8
3,775,737	+				-2.1
3,775,745	-				-1.5
3,775,818	+				-3.4
3,775,826	-				-2.7
3,775,836	-		PGA1_c36100	0.10	-3.4
3,775,893	+		PGA1_c36100	0.11	-2.0
3,775,894	-		PGA1_c36100	0.11	-3.5
3,775,980	+		PGA1_c36100	0.13	-2.9
3,776,031	-		PGA1_c36100	0.14	-3.6
3,776,051	+		PGA1_c36100	0.15	-2.9
3,776,059	-		PGA1_c36100	0.15	-3.7
3,776,078	+		PGA1_c36100	0.15	-1.4
3,776,148	-		PGA1_c36100	0.17	-3.3
3,776,180	+		PGA1_c36100	0.18	-4.6
3,776,237	-		PGA1_c36100	0.19	-2.6
3,776,267	+		PGA1_c36100	0.20	-2.1
3,776,320	-		PGA1_c36100	0.21	-2.3
3,776,336	-		PGA1_c36100	0.21	-3.5
3,776,368	-		PGA1_c36100	0.22	-2.1
3,776,387	-		PGA1_c36100	0.22	-3.3
3,776,417	+		PGA1_c36100	0.23	-3.3
3,776,419	-		PGA1_c36100	0.23	-2.6
3,776,422	+		PGA1_c36100	0.23	-4.2
3,776,449	+		PGA1_c36100	0.24	-4.2
3,776,459	+		PGA1_c36100	0.24	-2.7
3,776,459	+		PGA1_c36100	0.24	-2.4
3,776,459	+		PGA1_c36100	0.24	-3.7
3,776,491	-		PGA1_c36100	0.25	-4.5
3,776,522	-		PGA1_c36100	0.25	-2.8
3,776,529	+		PGA1_c36100	0.25	-4.2
3,776,620	-		PGA1_c36100	0.27	-3.2
3,776,620	-		PGA1_c36100	0.27	-4.9
3,776,620	-		PGA1_c36100	0.27	-2.4
3,776,641	+		PGA1_c36100	0.28	-2.0
3,776,646	+		PGA1_c36100	0.28	-3.2
3,776,646	+		PGA1_c36100	0.28	-4.3
3,776,646	+		PGA1_c36100	0.28	-3.2
3,776,714	+		PGA1_c36100	0.29	-2.3
3,776,722	-		PGA1_c36100	0.30	-2.9
3,776,748	-		PGA1_c36100	0.30	-2.6
3,776,787	-		PGA1_c36100	0.31	-2.1
3,776,808	+		PGA1_c36100	0.32	-2.3
3,776,845	-		PGA1_c36100	0.32	-3.5
3,776,867	-		PGA1_c36100	0.33	-3.6
3,776,923	-		PGA1_c36100	0.34	-4.3
3,776,991	-		PGA1_c36100	0.36	-2.8
3,777,006	+		PGA1_c36100	0.36	-2.0
3,777,011	-		PGA1_c36100	0.36	-3.4
3,777,067	-		PGA1_c36100	0.37	-3.0
3,777,075	+		PGA1_c36100	0.37	-0.6
3,777,083	-		PGA1_c36100	0.38	-2.5
3,777,083	-		PGA1_c36100	0.38	-2.9
3,777,158	-		PGA1_c36100	0.39	-2.8
3,777,198	-		PGA1_c36100	0.40	-3.0
3,777,201	+		PGA1_c36100	0.40	-2.3
3,777,209	-		PGA1_c36100	0.40	-3.3
3,777,220	+		PGA1_c36100	0.41	-2.1
3,777,303	+		PGA1_c36100	0.42	-3.7
3,777,365	-		PGA1_c36100	0.44	-1.0
3,777,365	-		PGA1_c36100	0.44	-2.0
3,777,382	+		PGA1_c36100	0.44	-3.7
3,777,390	-		PGA1_c36100	0.44	-3.4
3,777,391	+		PGA1_c36100	0.44	-2.8
3,777,391	+		PGA1_c36100	0.44	-3.7
3,777,408	+		PGA1_c36100	0.45	-3.3
3,777,415	+		PGA1_c36100	0.45	-3.4
3,777,415	+		PGA1_c36100	0.45	-3.4
3,777,446	-		PGA1_c36100	0.46	-2.4
3,777,462	-		PGA1_c36100	0.46	-2.9
3,777,467	-		PGA1_c36100	0.46	-3.4
3,777,477	-		PGA1_c36100	0.46	-3.0
3,777,477	-		PGA1_c36100	0.46	-3.0
3,777,518	+		PGA1_c36100	0.47	-2.0
3,777,573	+		PGA1_c36100	0.48	-3.1
3,777,574	-		PGA1_c36100	0.48	-3.9
3,777,630	+		PGA1_c36100	0.50	-3.0
3,777,651	+		PGA1_c36100	0.50	-4.4
3,777,664	-		PGA1_c36100	0.50	-2.6
3,777,702	-		PGA1_c36100	0.51	-3.4
3,777,744	-		PGA1_c36100	0.52	-2.1
3,777,764	+		PGA1_c36100	0.53	-3.1
3,777,805	-		PGA1_c36100	0.53	-3.0
3,777,843	+		PGA1_c36100	0.54	-2.7
3,777,867	+		PGA1_c36100	0.55	-3.3
3,777,883	+		PGA1_c36100	0.55	-2.7
3,778,124	+		PGA1_c36100	0.61	-2.9
3,778,215	-		PGA1_c36100	0.63	-3.0
3,778,227	-		PGA1_c36100	0.63	-2.7
3,778,236	-		PGA1_c36100	0.63	-3.3
3,778,343	+		PGA1_c36100	0.65	-0.4
3,778,511	+		PGA1_c36100	0.69	-3.7
3,778,511	+		PGA1_c36100	0.69	-0.2
3,778,540	-		PGA1_c36100	0.70	-3.3
3,778,736	-		PGA1_c36100	0.74	-2.6
3,778,765	-		PGA1_c36100	0.75	-4.0
3,778,771	+		PGA1_c36100	0.75	-4.4
3,778,807	-		PGA1_c36100	0.76	-2.5
3,778,814	+		PGA1_c36100	0.76	-4.5
3,778,815	+		PGA1_c36100	0.76	-3.0
3,778,834	-		PGA1_c36100	0.76	-3.1
3,779,024	+		PGA1_c36100	0.80	-3.3
3,779,095	-		PGA1_c36100	0.82	-2.8
3,779,159	+		PGA1_c36100	0.83	-3.0
3,779,164	+		PGA1_c36100	0.83	-5.1
3,779,234	+		PGA1_c36100	0.85	-3.8
3,779,242	-		PGA1_c36100	0.85	-3.5
3,779,242	-		PGA1_c36100	0.85	-4.4
3,779,266	-		PGA1_c36100	0.86	-2.7
3,779,302	+		PGA1_c36100	0.87	-2.6
3,779,323	+		PGA1_c36100	0.87	-2.5
3,779,436	+		PGA1_c36100	0.89	-3.4
3,779,438	+		PGA1_c36100	0.90	-1.4
3,779,486	+				-3.6
3,779,563	+				-3.4
3,779,643	+				-2.7
3,779,643	+				-1.7
3,779,651	-				-2.0
3,779,697	+				-4.0
3,779,704	+				-2.0
3,779,705	-				-2.1
3,779,712	-				-2.5
3,779,746	-				-2.1
3,779,889	-				-1.5
3,779,896	-				-0.2
3,779,896	-				-1.7
3,779,907	+				-1.4
3,779,964	+				-0.2
3,779,965	-				-1.3
3,779,972	-				+0.8
3,779,972	-				+0.4
3,779,972	-				-0.5
3,779,980	+				-0.1
3,779,980	+				+0.4
3,779,980	+				+0.6
3,779,988	-				-0.3
3,779,988	-				-1.4
3,780,030	+				-0.7
3,780,042	-				-1.0
3,780,047	-				+0.1
3,780,047	-				+0.7
3,780,126	+				-0.2
3,780,191	+				-0.6
3,780,289	+		PGA1_c36110	0.19	-1.5
3,780,372	-		PGA1_c36110	0.31	-0.3
3,780,593	+		PGA1_c36110	0.64	-2.6
3,780,601	-		PGA1_c36110	0.65	-0.8
3,780,624	+		PGA1_c36110	0.68	-0.9
3,780,697	+		PGA1_c36110	0.79	+0.0
3,780,697	+		PGA1_c36110	0.79	-1.9
3,780,705	-		PGA1_c36110	0.80	-2.9
3,780,705	-		PGA1_c36110	0.80	-0.1
3,780,729	+		PGA1_c36110	0.84	-0.7
3,780,780	-				-0.4
3,780,832	-				+1.3
3,780,868	+				-2.0
3,780,872	-				-0.5
3,780,876	-				-1.1