Experiment: Nickel (II) chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3578 and Psest_3579 are separated by 194 nucleotides Psest_3579 and Psest_3580 are separated by 45 nucleotides Psest_3580 and Psest_3581 are separated by 22 nucleotides Psest_3581 and Psest_3582 are separated by 17 nucleotides
Psest_3578: Psest_3578 - Catalase, at 3,754,471 to 3,755,931
_3578
Psest_3579: Psest_3579 - ribosomal protein L17, at 3,756,126 to 3,756,512
_3579
Psest_3580: Psest_3580 - DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type, at 3,756,558 to 3,757,559
_3580
Psest_3581: Psest_3581 - ribosomal protein S4, bacterial/organelle type, at 3,757,582 to 3,758,202
_3581
Psest_3582: Psest_3582 - 30S ribosomal protein S11, at 3,758,220 to 3,758,609
_3582
Position (kb)
3756
3757
3758 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3755.582 kb on + strand, within Psest_3578 at 3755.827 kb on + strand at 3755.827 kb on + strand at 3755.828 kb on - strand at 3755.828 kb on - strand at 3755.973 kb on + strand at 3755.973 kb on + strand at 3755.974 kb on - strand at 3755.977 kb on + strand at 3756.001 kb on - strand at 3756.047 kb on - strand at 3756.048 kb on + strand at 3756.048 kb on + strand at 3756.048 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM remove 3,755,582 + Psest_3578 0.76 -1.1 3,755,827 + -2.3 3,755,827 + -0.3 3,755,828 - +1.0 3,755,828 - -1.5 3,755,973 + -0.4 3,755,973 + -0.9 3,755,974 - +2.7 3,755,977 + -1.6 3,756,001 - +1.5 3,756,047 - -0.1 3,756,048 + -0.2 3,756,048 + -0.6 3,756,048 + -0.8
Or see this region's nucleotide sequence