Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3580

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3578 and Psest_3579 are separated by 194 nucleotidesPsest_3579 and Psest_3580 are separated by 45 nucleotidesPsest_3580 and Psest_3581 are separated by 22 nucleotidesPsest_3581 and Psest_3582 are separated by 17 nucleotides Psest_3578: Psest_3578 - Catalase, at 3,754,471 to 3,755,931 _3578 Psest_3579: Psest_3579 - ribosomal protein L17, at 3,756,126 to 3,756,512 _3579 Psest_3580: Psest_3580 - DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type, at 3,756,558 to 3,757,559 _3580 Psest_3581: Psest_3581 - ribosomal protein S4, bacterial/organelle type, at 3,757,582 to 3,758,202 _3581 Psest_3582: Psest_3582 - 30S ribosomal protein S11, at 3,758,220 to 3,758,609 _3582 Position (kb) 3756 3757 3758Strain fitness (log2 ratio) -2 -1 0 1 2at 3755.582 kb on + strand, within Psest_3578at 3755.827 kb on + strandat 3755.827 kb on + strandat 3755.828 kb on - strandat 3755.828 kb on - strandat 3755.973 kb on + strandat 3755.973 kb on + strandat 3755.974 kb on - strandat 3755.977 kb on + strandat 3756.001 kb on - strandat 3756.047 kb on - strandat 3756.048 kb on + strandat 3756.048 kb on + strandat 3756.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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3,755,582 + Psest_3578 0.76 -1.1
3,755,827 + -2.3
3,755,827 + -0.3
3,755,828 - +1.0
3,755,828 - -1.5
3,755,973 + -0.4
3,755,973 + -0.9
3,755,974 - +2.7
3,755,977 + -1.6
3,756,001 - +1.5
3,756,047 - -0.1
3,756,048 + -0.2
3,756,048 + -0.6
3,756,048 + -0.8

Or see this region's nucleotide sequence