Experiment: Nickel (II) chloride 0.8 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3525 and Psest_3526 are separated by 177 nucleotides Psest_3526 and Psest_3527 are separated by 258 nucleotides
Psest_3525: Psest_3525 - Formamidopyrimidine-DNA glycosylase, at 3,705,834 to 3,706,616
_3525
Psest_3526: Psest_3526 - Short chain fatty acids transporter, at 3,706,794 to 3,708,128
_3526
Psest_3527: Psest_3527 - Pseudouridylate synthases, 23S RNA-specific, at 3,708,387 to 3,709,271
_3527
Position (kb)
3706
3707
3708
3709 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3705.890 kb on - strand at 3706.054 kb on + strand, within Psest_3525 at 3706.054 kb on + strand, within Psest_3525 at 3706.054 kb on + strand, within Psest_3525 at 3706.054 kb on + strand, within Psest_3525 at 3706.055 kb on - strand, within Psest_3525 at 3706.055 kb on - strand, within Psest_3525 at 3706.055 kb on - strand, within Psest_3525 at 3706.055 kb on - strand, within Psest_3525 at 3706.059 kb on - strand, within Psest_3525 at 3706.291 kb on + strand, within Psest_3525 at 3706.291 kb on + strand, within Psest_3525 at 3706.292 kb on - strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.336 kb on + strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.337 kb on - strand, within Psest_3525 at 3706.481 kb on + strand, within Psest_3525 at 3706.481 kb on + strand, within Psest_3525 at 3706.481 kb on + strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525 at 3706.482 kb on - strand, within Psest_3525 at 3706.718 kb on + strand at 3706.783 kb on - strand at 3706.808 kb on - strand at 3706.823 kb on + strand at 3706.871 kb on - strand at 3706.871 kb on - strand at 3706.920 kb on + strand at 3707.069 kb on + strand, within Psest_3526 at 3707.070 kb on - strand, within Psest_3526 at 3707.070 kb on - strand, within Psest_3526 at 3707.152 kb on - strand, within Psest_3526 at 3707.152 kb on - strand, within Psest_3526 at 3707.194 kb on + strand, within Psest_3526 at 3707.195 kb on - strand, within Psest_3526 at 3707.195 kb on - strand, within Psest_3526 at 3707.257 kb on + strand, within Psest_3526 at 3707.359 kb on + strand, within Psest_3526 at 3707.359 kb on + strand, within Psest_3526 at 3707.359 kb on + strand, within Psest_3526 at 3707.359 kb on + strand, within Psest_3526 at 3707.360 kb on - strand, within Psest_3526 at 3707.360 kb on - strand, within Psest_3526 at 3707.360 kb on - strand, within Psest_3526 at 3707.360 kb on - strand, within Psest_3526 at 3707.605 kb on - strand, within Psest_3526 at 3707.683 kb on + strand, within Psest_3526 at 3707.684 kb on - strand, within Psest_3526 at 3707.684 kb on - strand, within Psest_3526 at 3707.816 kb on + strand, within Psest_3526 at 3707.855 kb on + strand, within Psest_3526 at 3707.856 kb on - strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.859 kb on + strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.860 kb on - strand, within Psest_3526 at 3707.880 kb on + strand, within Psest_3526 at 3707.880 kb on + strand, within Psest_3526 at 3707.880 kb on + strand, within Psest_3526 at 3707.881 kb on - strand, within Psest_3526 at 3707.913 kb on + strand, within Psest_3526 at 3707.913 kb on + strand, within Psest_3526 at 3707.913 kb on + strand, within Psest_3526 at 3707.913 kb on + strand, within Psest_3526 at 3707.914 kb on - strand, within Psest_3526 at 3707.914 kb on - strand, within Psest_3526 at 3707.917 kb on + strand, within Psest_3526 at 3707.917 kb on + strand, within Psest_3526 at 3707.917 kb on + strand, within Psest_3526 at 3708.042 kb on + strand at 3708.083 kb on + strand at 3708.083 kb on + strand at 3708.083 kb on + strand at 3708.083 kb on + strand at 3708.083 kb on + strand at 3708.084 kb on - strand at 3708.085 kb on + strand at 3708.085 kb on + strand at 3708.085 kb on + strand at 3708.085 kb on + strand at 3708.085 kb on + strand at 3708.085 kb on + strand at 3708.086 kb on - strand at 3708.086 kb on - strand at 3708.086 kb on - strand at 3708.086 kb on - strand at 3708.086 kb on - strand at 3708.096 kb on + strand at 3708.166 kb on + strand at 3708.365 kb on + strand at 3708.365 kb on + strand at 3708.366 kb on - strand at 3708.488 kb on - strand, within Psest_3527 at 3708.950 kb on - strand, within Psest_3527 at 3708.950 kb on - strand, within Psest_3527 at 3709.069 kb on + strand, within Psest_3527 at 3709.069 kb on + strand, within Psest_3527 at 3709.069 kb on + strand, within Psest_3527 at 3709.069 kb on + strand, within Psest_3527 at 3709.070 kb on - strand, within Psest_3527 at 3709.070 kb on - strand, within Psest_3527
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM remove 3,705,890 - +1.2 3,706,054 + Psest_3525 0.28 +0.2 3,706,054 + Psest_3525 0.28 +1.0 3,706,054 + Psest_3525 0.28 -0.2 3,706,054 + Psest_3525 0.28 -0.1 3,706,055 - Psest_3525 0.28 +0.8 3,706,055 - Psest_3525 0.28 +0.4 3,706,055 - Psest_3525 0.28 +2.0 3,706,055 - Psest_3525 0.28 +2.6 3,706,059 - Psest_3525 0.29 -1.3 3,706,291 + Psest_3525 0.58 +0.3 3,706,291 + Psest_3525 0.58 -0.5 3,706,292 - Psest_3525 0.58 +1.6 3,706,336 + Psest_3525 0.64 -1.0 3,706,336 + Psest_3525 0.64 -1.0 3,706,336 + Psest_3525 0.64 -0.2 3,706,336 + Psest_3525 0.64 +1.3 3,706,336 + Psest_3525 0.64 +0.0 3,706,336 + Psest_3525 0.64 +1.0 3,706,336 + Psest_3525 0.64 -0.3 3,706,336 + Psest_3525 0.64 -0.5 3,706,337 - Psest_3525 0.64 -0.2 3,706,337 - Psest_3525 0.64 +0.4 3,706,337 - Psest_3525 0.64 -0.3 3,706,337 - Psest_3525 0.64 -0.0 3,706,337 - Psest_3525 0.64 +1.4 3,706,337 - Psest_3525 0.64 +0.9 3,706,337 - Psest_3525 0.64 +0.2 3,706,337 - Psest_3525 0.64 -0.0 3,706,337 - Psest_3525 0.64 +0.5 3,706,337 - Psest_3525 0.64 +0.8 3,706,337 - Psest_3525 0.64 +0.6 3,706,337 - Psest_3525 0.64 +0.9 3,706,337 - Psest_3525 0.64 +0.3 3,706,337 - Psest_3525 0.64 +1.2 3,706,337 - Psest_3525 0.64 +2.0 3,706,337 - Psest_3525 0.64 +0.0 3,706,337 - Psest_3525 0.64 -1.0 3,706,481 + Psest_3525 0.83 +0.5 3,706,481 + Psest_3525 0.83 +0.2 3,706,481 + Psest_3525 0.83 -0.5 3,706,482 - Psest_3525 0.83 +1.0 3,706,482 - Psest_3525 0.83 +0.8 3,706,482 - Psest_3525 0.83 +1.0 3,706,482 - Psest_3525 0.83 +1.0 3,706,482 - Psest_3525 0.83 -0.1 3,706,718 + +0.5 3,706,783 - +0.1 3,706,808 - +2.2 3,706,823 + +1.0 3,706,871 - +1.6 3,706,871 - +0.4 3,706,920 + -0.3 3,707,069 + Psest_3526 0.21 -0.1 3,707,070 - Psest_3526 0.21 +1.1 3,707,070 - Psest_3526 0.21 -0.2 3,707,152 - Psest_3526 0.27 +0.8 3,707,152 - Psest_3526 0.27 +0.1 3,707,194 + Psest_3526 0.30 -2.3 3,707,195 - Psest_3526 0.30 +2.2 3,707,195 - Psest_3526 0.30 +1.2 3,707,257 + Psest_3526 0.35 +2.3 3,707,359 + Psest_3526 0.42 +0.8 3,707,359 + Psest_3526 0.42 +0.8 3,707,359 + Psest_3526 0.42 +0.3 3,707,359 + Psest_3526 0.42 -0.3 3,707,360 - Psest_3526 0.42 +1.1 3,707,360 - Psest_3526 0.42 +0.5 3,707,360 - Psest_3526 0.42 -1.3 3,707,360 - Psest_3526 0.42 +1.7 3,707,605 - Psest_3526 0.61 +0.5 3,707,683 + Psest_3526 0.67 +1.1 3,707,684 - Psest_3526 0.67 +0.2 3,707,684 - Psest_3526 0.67 -0.0 3,707,816 + Psest_3526 0.77 +1.1 3,707,855 + Psest_3526 0.79 +0.2 3,707,856 - Psest_3526 0.80 +0.8 3,707,859 + Psest_3526 0.80 +1.1 3,707,859 + Psest_3526 0.80 -1.2 3,707,859 + Psest_3526 0.80 +0.5 3,707,859 + Psest_3526 0.80 -0.1 3,707,859 + Psest_3526 0.80 -0.9 3,707,859 + Psest_3526 0.80 +0.4 3,707,859 + Psest_3526 0.80 +1.1 3,707,859 + Psest_3526 0.80 +0.2 3,707,859 + Psest_3526 0.80 +0.4 3,707,859 + Psest_3526 0.80 +1.0 3,707,860 - Psest_3526 0.80 +0.8 3,707,860 - Psest_3526 0.80 +0.1 3,707,860 - Psest_3526 0.80 +1.0 3,707,860 - Psest_3526 0.80 +0.4 3,707,860 - Psest_3526 0.80 -0.1 3,707,860 - Psest_3526 0.80 +0.8 3,707,860 - Psest_3526 0.80 +0.7 3,707,860 - Psest_3526 0.80 -0.5 3,707,860 - Psest_3526 0.80 -1.0 3,707,860 - Psest_3526 0.80 +0.4 3,707,880 + Psest_3526 0.81 +0.4 3,707,880 + Psest_3526 0.81 +0.7 3,707,880 + Psest_3526 0.81 -0.4 3,707,881 - Psest_3526 0.81 -0.1 3,707,913 + Psest_3526 0.84 +1.2 3,707,913 + Psest_3526 0.84 +0.1 3,707,913 + Psest_3526 0.84 -2.9 3,707,913 + Psest_3526 0.84 +2.9 3,707,914 - Psest_3526 0.84 +1.6 3,707,914 - Psest_3526 0.84 +0.1 3,707,917 + Psest_3526 0.84 -0.1 3,707,917 + Psest_3526 0.84 +1.8 3,707,917 + Psest_3526 0.84 +0.5 3,708,042 + +0.4 3,708,083 + +0.2 3,708,083 + +0.3 3,708,083 + +1.2 3,708,083 + +0.4 3,708,083 + -0.3 3,708,084 - +0.7 3,708,085 + +0.4 3,708,085 + +0.8 3,708,085 + -0.1 3,708,085 + +1.2 3,708,085 + -2.5 3,708,085 + +0.5 3,708,086 - +1.5 3,708,086 - +0.1 3,708,086 - +0.4 3,708,086 - -0.2 3,708,086 - +1.4 3,708,096 + +1.1 3,708,166 + -0.2 3,708,365 + +0.4 3,708,365 + -3.2 3,708,366 - -0.9 3,708,488 - Psest_3527 0.11 +0.5 3,708,950 - Psest_3527 0.64 +1.2 3,708,950 - Psest_3527 0.64 -0.1 3,709,069 + Psest_3527 0.77 +1.3 3,709,069 + Psest_3527 0.77 +0.6 3,709,069 + Psest_3527 0.77 +0.4 3,709,069 + Psest_3527 0.77 -0.4 3,709,070 - Psest_3527 0.77 -0.9 3,709,070 - Psest_3527 0.77 +0.3
Or see this region's nucleotide sequence