Experiment: m.b. Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2905 and HP15_2906 are separated by 205 nucleotides HP15_2906 and HP15_2907 are separated by 69 nucleotides HP15_2907 and HP15_2908 overlap by 16 nucleotides HP15_2908 and HP15_2909 are separated by 13 nucleotides
HP15_2905: HP15_2905 - lipoprotein-like protein, at 3,043,170 to 3,044,630
_2905
HP15_2906: HP15_2906 - conserved hypothetical protein, at 3,044,836 to 3,045,012
_2906
HP15_2907: HP15_2907 - extracellular solute-binding protein, family 3, at 3,045,082 to 3,045,864
_2907
HP15_2908: HP15_2908 - conserved hypothetical protein, at 3,045,849 to 3,046,205
_2908
HP15_2909: HP15_2909 - heat shock protein DnaJ domain protein, at 3,046,219 to 3,047,205
_2909
Position (kb)
3045
3046 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3044.156 kb on + strand, within HP15_2905 at 3044.157 kb on - strand, within HP15_2905 at 3044.157 kb on - strand, within HP15_2905 at 3044.164 kb on + strand, within HP15_2905 at 3044.177 kb on - strand, within HP15_2905 at 3044.231 kb on + strand, within HP15_2905 at 3044.239 kb on - strand, within HP15_2905 at 3044.251 kb on - strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.343 kb on + strand, within HP15_2905 at 3044.353 kb on + strand, within HP15_2905 at 3044.516 kb on + strand at 3044.587 kb on + strand at 3044.898 kb on + strand, within HP15_2906 at 3045.018 kb on + strand at 3045.111 kb on + strand at 3045.123 kb on - strand at 3045.166 kb on - strand, within HP15_2907 at 3045.204 kb on + strand, within HP15_2907 at 3045.206 kb on + strand, within HP15_2907 at 3045.206 kb on + strand, within HP15_2907 at 3045.206 kb on + strand, within HP15_2907 at 3045.214 kb on + strand, within HP15_2907 at 3045.220 kb on - strand, within HP15_2907 at 3045.230 kb on - strand, within HP15_2907 at 3045.333 kb on - strand, within HP15_2907 at 3045.359 kb on + strand, within HP15_2907 at 3045.424 kb on - strand, within HP15_2907 at 3045.450 kb on + strand, within HP15_2907 at 3045.452 kb on - strand, within HP15_2907 at 3045.500 kb on - strand, within HP15_2907 at 3045.500 kb on - strand, within HP15_2907 at 3045.500 kb on - strand, within HP15_2907 at 3045.512 kb on + strand, within HP15_2907 at 3045.520 kb on - strand, within HP15_2907 at 3045.536 kb on + strand, within HP15_2907 at 3045.541 kb on + strand, within HP15_2907 at 3045.753 kb on + strand, within HP15_2907 at 3045.753 kb on + strand, within HP15_2907 at 3045.761 kb on - strand, within HP15_2907 at 3045.761 kb on - strand, within HP15_2907 at 3045.761 kb on - strand, within HP15_2907 at 3045.964 kb on - strand, within HP15_2908 at 3045.991 kb on + strand, within HP15_2908 at 3046.011 kb on + strand, within HP15_2908 at 3046.142 kb on + strand, within HP15_2908 at 3046.142 kb on + strand, within HP15_2908 at 3046.142 kb on + strand, within HP15_2908 at 3046.142 kb on + strand, within HP15_2908 at 3046.150 kb on - strand, within HP15_2908 at 3046.150 kb on - strand, within HP15_2908 at 3046.150 kb on - strand, within HP15_2908 at 3046.172 kb on + strand at 3046.334 kb on - strand, within HP15_2909 at 3046.370 kb on + strand, within HP15_2909 at 3046.405 kb on + strand, within HP15_2909 at 3046.469 kb on + strand, within HP15_2909 at 3046.473 kb on + strand, within HP15_2909 at 3046.518 kb on - strand, within HP15_2909 at 3046.615 kb on + strand, within HP15_2909 at 3046.694 kb on + strand, within HP15_2909 at 3046.702 kb on - strand, within HP15_2909 at 3046.773 kb on + strand, within HP15_2909 at 3046.783 kb on - strand, within HP15_2909 at 3046.858 kb on - strand, within HP15_2909 at 3046.858 kb on - strand, within HP15_2909 at 3046.858 kb on - strand, within HP15_2909
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM remove 3,044,156 + HP15_2905 0.67 -1.4 3,044,157 - HP15_2905 0.68 -0.6 3,044,157 - HP15_2905 0.68 +0.4 3,044,164 + HP15_2905 0.68 +0.2 3,044,177 - HP15_2905 0.69 +0.1 3,044,231 + HP15_2905 0.73 +0.1 3,044,239 - HP15_2905 0.73 +0.9 3,044,251 - HP15_2905 0.74 +0.5 3,044,343 + HP15_2905 0.80 +0.6 3,044,343 + HP15_2905 0.80 -0.6 3,044,343 + HP15_2905 0.80 +0.4 3,044,343 + HP15_2905 0.80 -0.3 3,044,353 + HP15_2905 0.81 +1.3 3,044,516 + +0.2 3,044,587 + -0.0 3,044,898 + HP15_2906 0.35 +0.6 3,045,018 + +1.4 3,045,111 + +0.4 3,045,123 - +1.1 3,045,166 - HP15_2907 0.11 +1.4 3,045,204 + HP15_2907 0.16 -0.6 3,045,206 + HP15_2907 0.16 +0.6 3,045,206 + HP15_2907 0.16 +1.0 3,045,206 + HP15_2907 0.16 +0.4 3,045,214 + HP15_2907 0.17 -1.3 3,045,220 - HP15_2907 0.18 -1.8 3,045,230 - HP15_2907 0.19 -0.4 3,045,333 - HP15_2907 0.32 +0.0 3,045,359 + HP15_2907 0.35 +1.6 3,045,424 - HP15_2907 0.44 +0.4 3,045,450 + HP15_2907 0.47 +2.0 3,045,452 - HP15_2907 0.47 +0.0 3,045,500 - HP15_2907 0.53 +0.4 3,045,500 - HP15_2907 0.53 +1.1 3,045,500 - HP15_2907 0.53 +0.1 3,045,512 + HP15_2907 0.55 +0.4 3,045,520 - HP15_2907 0.56 -0.6 3,045,536 + HP15_2907 0.58 -0.8 3,045,541 + HP15_2907 0.59 -1.5 3,045,753 + HP15_2907 0.86 +0.1 3,045,753 + HP15_2907 0.86 +1.1 3,045,761 - HP15_2907 0.87 +0.7 3,045,761 - HP15_2907 0.87 +0.2 3,045,761 - HP15_2907 0.87 +1.2 3,045,964 - HP15_2908 0.32 -0.1 3,045,991 + HP15_2908 0.40 +2.6 3,046,011 + HP15_2908 0.45 -0.2 3,046,142 + HP15_2908 0.82 +0.7 3,046,142 + HP15_2908 0.82 +0.5 3,046,142 + HP15_2908 0.82 -0.1 3,046,142 + HP15_2908 0.82 +0.8 3,046,150 - HP15_2908 0.84 +0.4 3,046,150 - HP15_2908 0.84 +1.0 3,046,150 - HP15_2908 0.84 +1.1 3,046,172 + -1.5 3,046,334 - HP15_2909 0.12 +1.1 3,046,370 + HP15_2909 0.15 +1.0 3,046,405 + HP15_2909 0.19 +1.0 3,046,469 + HP15_2909 0.25 +0.8 3,046,473 + HP15_2909 0.26 -0.1 3,046,518 - HP15_2909 0.30 +2.0 3,046,615 + HP15_2909 0.40 +0.8 3,046,694 + HP15_2909 0.48 +1.5 3,046,702 - HP15_2909 0.49 -0.0 3,046,773 + HP15_2909 0.56 +1.0 3,046,783 - HP15_2909 0.57 +1.4 3,046,858 - HP15_2909 0.65 +1.1 3,046,858 - HP15_2909 0.65 -0.1 3,046,858 - HP15_2909 0.65 -0.6
Or see this region's nucleotide sequence