Strain Fitness in Marinobacter adhaerens HP15 around HP15_2907

Experiment: m.b. Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2905 and HP15_2906 are separated by 205 nucleotidesHP15_2906 and HP15_2907 are separated by 69 nucleotidesHP15_2907 and HP15_2908 overlap by 16 nucleotidesHP15_2908 and HP15_2909 are separated by 13 nucleotides HP15_2905: HP15_2905 - lipoprotein-like protein, at 3,043,170 to 3,044,630 _2905 HP15_2906: HP15_2906 - conserved hypothetical protein, at 3,044,836 to 3,045,012 _2906 HP15_2907: HP15_2907 - extracellular solute-binding protein, family 3, at 3,045,082 to 3,045,864 _2907 HP15_2908: HP15_2908 - conserved hypothetical protein, at 3,045,849 to 3,046,205 _2908 HP15_2909: HP15_2909 - heat shock protein DnaJ domain protein, at 3,046,219 to 3,047,205 _2909 Position (kb) 3045 3046Strain fitness (log2 ratio) -2 -1 0 1 2at 3044.156 kb on + strand, within HP15_2905at 3044.157 kb on - strand, within HP15_2905at 3044.157 kb on - strand, within HP15_2905at 3044.164 kb on + strand, within HP15_2905at 3044.177 kb on - strand, within HP15_2905at 3044.231 kb on + strand, within HP15_2905at 3044.239 kb on - strand, within HP15_2905at 3044.251 kb on - strand, within HP15_2905at 3044.343 kb on + strand, within HP15_2905at 3044.343 kb on + strand, within HP15_2905at 3044.343 kb on + strand, within HP15_2905at 3044.343 kb on + strand, within HP15_2905at 3044.353 kb on + strand, within HP15_2905at 3044.516 kb on + strandat 3044.587 kb on + strandat 3044.898 kb on + strand, within HP15_2906at 3045.018 kb on + strandat 3045.111 kb on + strandat 3045.123 kb on - strandat 3045.166 kb on - strand, within HP15_2907at 3045.204 kb on + strand, within HP15_2907at 3045.206 kb on + strand, within HP15_2907at 3045.206 kb on + strand, within HP15_2907at 3045.206 kb on + strand, within HP15_2907at 3045.214 kb on + strand, within HP15_2907at 3045.220 kb on - strand, within HP15_2907at 3045.230 kb on - strand, within HP15_2907at 3045.333 kb on - strand, within HP15_2907at 3045.359 kb on + strand, within HP15_2907at 3045.424 kb on - strand, within HP15_2907at 3045.450 kb on + strand, within HP15_2907at 3045.452 kb on - strand, within HP15_2907at 3045.500 kb on - strand, within HP15_2907at 3045.500 kb on - strand, within HP15_2907at 3045.500 kb on - strand, within HP15_2907at 3045.512 kb on + strand, within HP15_2907at 3045.520 kb on - strand, within HP15_2907at 3045.536 kb on + strand, within HP15_2907at 3045.541 kb on + strand, within HP15_2907at 3045.753 kb on + strand, within HP15_2907at 3045.753 kb on + strand, within HP15_2907at 3045.761 kb on - strand, within HP15_2907at 3045.761 kb on - strand, within HP15_2907at 3045.761 kb on - strand, within HP15_2907at 3045.964 kb on - strand, within HP15_2908at 3045.991 kb on + strand, within HP15_2908at 3046.011 kb on + strand, within HP15_2908at 3046.142 kb on + strand, within HP15_2908at 3046.142 kb on + strand, within HP15_2908at 3046.142 kb on + strand, within HP15_2908at 3046.142 kb on + strand, within HP15_2908at 3046.150 kb on - strand, within HP15_2908at 3046.150 kb on - strand, within HP15_2908at 3046.150 kb on - strand, within HP15_2908at 3046.172 kb on + strandat 3046.334 kb on - strand, within HP15_2909at 3046.370 kb on + strand, within HP15_2909at 3046.405 kb on + strand, within HP15_2909at 3046.469 kb on + strand, within HP15_2909at 3046.473 kb on + strand, within HP15_2909at 3046.518 kb on - strand, within HP15_2909at 3046.615 kb on + strand, within HP15_2909at 3046.694 kb on + strand, within HP15_2909at 3046.702 kb on - strand, within HP15_2909at 3046.773 kb on + strand, within HP15_2909at 3046.783 kb on - strand, within HP15_2909at 3046.858 kb on - strand, within HP15_2909at 3046.858 kb on - strand, within HP15_2909at 3046.858 kb on - strand, within HP15_2909

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM
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3,044,156 + HP15_2905 0.67 -1.4
3,044,157 - HP15_2905 0.68 -0.6
3,044,157 - HP15_2905 0.68 +0.4
3,044,164 + HP15_2905 0.68 +0.2
3,044,177 - HP15_2905 0.69 +0.1
3,044,231 + HP15_2905 0.73 +0.1
3,044,239 - HP15_2905 0.73 +0.9
3,044,251 - HP15_2905 0.74 +0.5
3,044,343 + HP15_2905 0.80 +0.6
3,044,343 + HP15_2905 0.80 -0.6
3,044,343 + HP15_2905 0.80 +0.4
3,044,343 + HP15_2905 0.80 -0.3
3,044,353 + HP15_2905 0.81 +1.3
3,044,516 + +0.2
3,044,587 + -0.0
3,044,898 + HP15_2906 0.35 +0.6
3,045,018 + +1.4
3,045,111 + +0.4
3,045,123 - +1.1
3,045,166 - HP15_2907 0.11 +1.4
3,045,204 + HP15_2907 0.16 -0.6
3,045,206 + HP15_2907 0.16 +0.6
3,045,206 + HP15_2907 0.16 +1.0
3,045,206 + HP15_2907 0.16 +0.4
3,045,214 + HP15_2907 0.17 -1.3
3,045,220 - HP15_2907 0.18 -1.8
3,045,230 - HP15_2907 0.19 -0.4
3,045,333 - HP15_2907 0.32 +0.0
3,045,359 + HP15_2907 0.35 +1.6
3,045,424 - HP15_2907 0.44 +0.4
3,045,450 + HP15_2907 0.47 +2.0
3,045,452 - HP15_2907 0.47 +0.0
3,045,500 - HP15_2907 0.53 +0.4
3,045,500 - HP15_2907 0.53 +1.1
3,045,500 - HP15_2907 0.53 +0.1
3,045,512 + HP15_2907 0.55 +0.4
3,045,520 - HP15_2907 0.56 -0.6
3,045,536 + HP15_2907 0.58 -0.8
3,045,541 + HP15_2907 0.59 -1.5
3,045,753 + HP15_2907 0.86 +0.1
3,045,753 + HP15_2907 0.86 +1.1
3,045,761 - HP15_2907 0.87 +0.7
3,045,761 - HP15_2907 0.87 +0.2
3,045,761 - HP15_2907 0.87 +1.2
3,045,964 - HP15_2908 0.32 -0.1
3,045,991 + HP15_2908 0.40 +2.6
3,046,011 + HP15_2908 0.45 -0.2
3,046,142 + HP15_2908 0.82 +0.7
3,046,142 + HP15_2908 0.82 +0.5
3,046,142 + HP15_2908 0.82 -0.1
3,046,142 + HP15_2908 0.82 +0.8
3,046,150 - HP15_2908 0.84 +0.4
3,046,150 - HP15_2908 0.84 +1.0
3,046,150 - HP15_2908 0.84 +1.1
3,046,172 + -1.5
3,046,334 - HP15_2909 0.12 +1.1
3,046,370 + HP15_2909 0.15 +1.0
3,046,405 + HP15_2909 0.19 +1.0
3,046,469 + HP15_2909 0.25 +0.8
3,046,473 + HP15_2909 0.26 -0.1
3,046,518 - HP15_2909 0.30 +2.0
3,046,615 + HP15_2909 0.40 +0.8
3,046,694 + HP15_2909 0.48 +1.5
3,046,702 - HP15_2909 0.49 -0.0
3,046,773 + HP15_2909 0.56 +1.0
3,046,783 - HP15_2909 0.57 +1.4
3,046,858 - HP15_2909 0.65 +1.1
3,046,858 - HP15_2909 0.65 -0.1
3,046,858 - HP15_2909 0.65 -0.6

Or see this region's nucleotide sequence