Experiment: m.b. Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2372 and HP15_2373 are separated by 90 nucleotides HP15_2373 and HP15_2374 overlap by 15 nucleotides HP15_2374 and HP15_2375 are separated by 58 nucleotides
HP15_2372: HP15_2372 - protein containing flagellin N-terminal / flagellin C-terminal, at 2,499,170 to 2,500,996
_2372
HP15_2373: HP15_2373 - hypothetical protein, at 2,501,087 to 2,501,206
_2373
HP15_2374: HP15_2374 - TPR repeat-containing protein, at 2,501,192 to 2,503,192
_2374
HP15_2375: HP15_2375 - exonuclease I, at 2,503,251 to 2,504,696
_2375
Position (kb)
2501
2502
2503
2504 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2500.351 kb on + strand, within HP15_2372 at 2500.536 kb on - strand, within HP15_2372 at 2500.585 kb on - strand, within HP15_2372 at 2500.675 kb on + strand, within HP15_2372 at 2500.778 kb on + strand, within HP15_2372 at 2500.786 kb on - strand, within HP15_2372 at 2500.790 kb on + strand, within HP15_2372 at 2500.935 kb on + strand at 2500.940 kb on + strand at 2500.943 kb on - strand at 2500.948 kb on - strand at 2500.948 kb on - strand at 2500.959 kb on - strand at 2501.004 kb on + strand at 2501.268 kb on - strand at 2501.301 kb on + strand at 2501.301 kb on + strand at 2501.350 kb on - strand at 2501.442 kb on - strand, within HP15_2374 at 2501.566 kb on - strand, within HP15_2374 at 2501.610 kb on + strand, within HP15_2374 at 2501.668 kb on - strand, within HP15_2374 at 2501.732 kb on + strand, within HP15_2374 at 2501.752 kb on + strand, within HP15_2374 at 2501.953 kb on + strand, within HP15_2374 at 2502.162 kb on - strand, within HP15_2374 at 2502.191 kb on - strand, within HP15_2374 at 2502.219 kb on - strand, within HP15_2374 at 2502.233 kb on - strand, within HP15_2374 at 2502.398 kb on - strand, within HP15_2374 at 2502.565 kb on + strand, within HP15_2374 at 2502.587 kb on + strand, within HP15_2374 at 2502.639 kb on + strand, within HP15_2374 at 2502.647 kb on - strand, within HP15_2374 at 2502.654 kb on - strand, within HP15_2374 at 2502.731 kb on - strand, within HP15_2374 at 2502.957 kb on + strand, within HP15_2374 at 2502.957 kb on + strand, within HP15_2374 at 2503.004 kb on - strand at 2503.013 kb on + strand at 2503.134 kb on + strand at 2503.200 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM remove 2,500,351 + HP15_2372 0.65 +0.9 2,500,536 - HP15_2372 0.75 -1.7 2,500,585 - HP15_2372 0.77 -1.0 2,500,675 + HP15_2372 0.82 +0.3 2,500,778 + HP15_2372 0.88 -0.2 2,500,786 - HP15_2372 0.88 +0.8 2,500,790 + HP15_2372 0.89 +0.0 2,500,935 + -0.7 2,500,940 + +0.2 2,500,943 - -0.7 2,500,948 - +0.6 2,500,948 - +0.0 2,500,959 - -1.1 2,501,004 + +1.9 2,501,268 - -1.4 2,501,301 + -0.3 2,501,301 + +0.0 2,501,350 - -1.0 2,501,442 - HP15_2374 0.12 +2.6 2,501,566 - HP15_2374 0.19 +1.0 2,501,610 + HP15_2374 0.21 -0.1 2,501,668 - HP15_2374 0.24 +2.4 2,501,732 + HP15_2374 0.27 -1.5 2,501,752 + HP15_2374 0.28 +0.7 2,501,953 + HP15_2374 0.38 -0.0 2,502,162 - HP15_2374 0.48 +0.3 2,502,191 - HP15_2374 0.50 +0.9 2,502,219 - HP15_2374 0.51 +0.1 2,502,233 - HP15_2374 0.52 -0.2 2,502,398 - HP15_2374 0.60 +1.4 2,502,565 + HP15_2374 0.69 -1.5 2,502,587 + HP15_2374 0.70 -2.7 2,502,639 + HP15_2374 0.72 -1.0 2,502,647 - HP15_2374 0.73 -0.8 2,502,654 - HP15_2374 0.73 -0.2 2,502,731 - HP15_2374 0.77 +0.7 2,502,957 + HP15_2374 0.88 +1.9 2,502,957 + HP15_2374 0.88 +0.7 2,503,004 - -0.6 2,503,013 + +1.9 2,503,134 + +0.2 2,503,200 + -0.5
Or see this region's nucleotide sequence