Strain Fitness in Marinobacter adhaerens HP15 around HP15_2374

Experiment: m.b. Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2372 and HP15_2373 are separated by 90 nucleotidesHP15_2373 and HP15_2374 overlap by 15 nucleotidesHP15_2374 and HP15_2375 are separated by 58 nucleotides HP15_2372: HP15_2372 - protein containing flagellin N-terminal / flagellin C-terminal, at 2,499,170 to 2,500,996 _2372 HP15_2373: HP15_2373 - hypothetical protein, at 2,501,087 to 2,501,206 _2373 HP15_2374: HP15_2374 - TPR repeat-containing protein, at 2,501,192 to 2,503,192 _2374 HP15_2375: HP15_2375 - exonuclease I, at 2,503,251 to 2,504,696 _2375 Position (kb) 2501 2502 2503 2504Strain fitness (log2 ratio) -2 -1 0 1 2at 2500.351 kb on + strand, within HP15_2372at 2500.536 kb on - strand, within HP15_2372at 2500.585 kb on - strand, within HP15_2372at 2500.675 kb on + strand, within HP15_2372at 2500.778 kb on + strand, within HP15_2372at 2500.786 kb on - strand, within HP15_2372at 2500.790 kb on + strand, within HP15_2372at 2500.935 kb on + strandat 2500.940 kb on + strandat 2500.943 kb on - strandat 2500.948 kb on - strandat 2500.948 kb on - strandat 2500.959 kb on - strandat 2501.004 kb on + strandat 2501.268 kb on - strandat 2501.301 kb on + strandat 2501.301 kb on + strandat 2501.350 kb on - strandat 2501.442 kb on - strand, within HP15_2374at 2501.566 kb on - strand, within HP15_2374at 2501.610 kb on + strand, within HP15_2374at 2501.668 kb on - strand, within HP15_2374at 2501.732 kb on + strand, within HP15_2374at 2501.752 kb on + strand, within HP15_2374at 2501.953 kb on + strand, within HP15_2374at 2502.162 kb on - strand, within HP15_2374at 2502.191 kb on - strand, within HP15_2374at 2502.219 kb on - strand, within HP15_2374at 2502.233 kb on - strand, within HP15_2374at 2502.398 kb on - strand, within HP15_2374at 2502.565 kb on + strand, within HP15_2374at 2502.587 kb on + strand, within HP15_2374at 2502.639 kb on + strand, within HP15_2374at 2502.647 kb on - strand, within HP15_2374at 2502.654 kb on - strand, within HP15_2374at 2502.731 kb on - strand, within HP15_2374at 2502.957 kb on + strand, within HP15_2374at 2502.957 kb on + strand, within HP15_2374at 2503.004 kb on - strandat 2503.013 kb on + strandat 2503.134 kb on + strandat 2503.200 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM
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2,500,351 + HP15_2372 0.65 +0.9
2,500,536 - HP15_2372 0.75 -1.7
2,500,585 - HP15_2372 0.77 -1.0
2,500,675 + HP15_2372 0.82 +0.3
2,500,778 + HP15_2372 0.88 -0.2
2,500,786 - HP15_2372 0.88 +0.8
2,500,790 + HP15_2372 0.89 +0.0
2,500,935 + -0.7
2,500,940 + +0.2
2,500,943 - -0.7
2,500,948 - +0.6
2,500,948 - +0.0
2,500,959 - -1.1
2,501,004 + +1.9
2,501,268 - -1.4
2,501,301 + -0.3
2,501,301 + +0.0
2,501,350 - -1.0
2,501,442 - HP15_2374 0.12 +2.6
2,501,566 - HP15_2374 0.19 +1.0
2,501,610 + HP15_2374 0.21 -0.1
2,501,668 - HP15_2374 0.24 +2.4
2,501,732 + HP15_2374 0.27 -1.5
2,501,752 + HP15_2374 0.28 +0.7
2,501,953 + HP15_2374 0.38 -0.0
2,502,162 - HP15_2374 0.48 +0.3
2,502,191 - HP15_2374 0.50 +0.9
2,502,219 - HP15_2374 0.51 +0.1
2,502,233 - HP15_2374 0.52 -0.2
2,502,398 - HP15_2374 0.60 +1.4
2,502,565 + HP15_2374 0.69 -1.5
2,502,587 + HP15_2374 0.70 -2.7
2,502,639 + HP15_2374 0.72 -1.0
2,502,647 - HP15_2374 0.73 -0.8
2,502,654 - HP15_2374 0.73 -0.2
2,502,731 - HP15_2374 0.77 +0.7
2,502,957 + HP15_2374 0.88 +1.9
2,502,957 + HP15_2374 0.88 +0.7
2,503,004 - -0.6
2,503,013 + +1.9
2,503,134 + +0.2
2,503,200 + -0.5

Or see this region's nucleotide sequence