Strain Fitness in Marinobacter adhaerens HP15 around HP15_2178

Experiment: m.b. Vanillin 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2176 and HP15_2177 are separated by 282 nucleotidesHP15_2177 and HP15_2178 are separated by 17 nucleotidesHP15_2178 and HP15_2179 overlap by 8 nucleotides HP15_2176: HP15_2176 - pyruvate kinase II, at 2,287,110 to 2,288,558 _2176 HP15_2177: HP15_2177 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, at 2,288,841 to 2,289,506 _2177 HP15_2178: HP15_2178 - 6-phosphogluconolactonase, at 2,289,524 to 2,290,237 _2178 HP15_2179: HP15_2179 - glucose-6-phosphate 1-dehydrogenase, at 2,290,230 to 2,291,705 _2179 Position (kb) 2289 2290 2291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2288.676 kb on + strandat 2288.725 kb on - strandat 2288.767 kb on - strandat 2288.860 kb on + strandat 2288.868 kb on - strandat 2288.952 kb on - strand, within HP15_2177at 2289.197 kb on + strand, within HP15_2177at 2289.229 kb on + strand, within HP15_2177at 2289.285 kb on - strand, within HP15_2177at 2289.444 kb on - strandat 2289.590 kb on + strandat 2289.681 kb on - strand, within HP15_2178at 2289.686 kb on - strand, within HP15_2178at 2289.815 kb on - strand, within HP15_2178at 2289.834 kb on + strand, within HP15_2178at 2289.842 kb on - strand, within HP15_2178at 2289.872 kb on - strand, within HP15_2178at 2289.901 kb on - strand, within HP15_2178at 2290.024 kb on + strand, within HP15_2178at 2290.040 kb on + strand, within HP15_2178at 2290.174 kb on - strandat 2290.407 kb on - strand, within HP15_2179at 2290.408 kb on + strandat 2290.501 kb on - strand, within HP15_2179at 2290.519 kb on + strand, within HP15_2179at 2290.519 kb on + strand, within HP15_2179at 2290.527 kb on - strand, within HP15_2179at 2290.611 kb on + strand, within HP15_2179at 2290.686 kb on + strand, within HP15_2179at 2290.686 kb on + strand, within HP15_2179at 2290.694 kb on - strand, within HP15_2179at 2290.752 kb on - strand, within HP15_2179at 2290.856 kb on + strand, within HP15_2179at 2290.864 kb on - strand, within HP15_2179at 2290.864 kb on - strand, within HP15_2179at 2291.063 kb on + strand, within HP15_2179at 2291.156 kb on - strand, within HP15_2179at 2291.156 kb on - strand, within HP15_2179

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM
remove
2,288,676 + -1.6
2,288,725 - -0.3
2,288,767 - -0.8
2,288,860 + -0.4
2,288,868 - -0.1
2,288,952 - HP15_2177 0.17 -3.0
2,289,197 + HP15_2177 0.53 -1.3
2,289,229 + HP15_2177 0.58 -2.4
2,289,285 - HP15_2177 0.67 +0.8
2,289,444 - -1.9
2,289,590 + +1.0
2,289,681 - HP15_2178 0.22 -1.7
2,289,686 - HP15_2178 0.23 +0.8
2,289,815 - HP15_2178 0.41 -1.0
2,289,834 + HP15_2178 0.43 -1.3
2,289,842 - HP15_2178 0.45 -0.9
2,289,872 - HP15_2178 0.49 +0.0
2,289,901 - HP15_2178 0.53 -0.5
2,290,024 + HP15_2178 0.70 +1.8
2,290,040 + HP15_2178 0.72 +0.8
2,290,174 - -0.9
2,290,407 - HP15_2179 0.12 -0.5
2,290,408 + +0.2
2,290,501 - HP15_2179 0.18 +0.1
2,290,519 + HP15_2179 0.20 +1.0
2,290,519 + HP15_2179 0.20 -0.4
2,290,527 - HP15_2179 0.20 -1.7
2,290,611 + HP15_2179 0.26 -3.0
2,290,686 + HP15_2179 0.31 -0.5
2,290,686 + HP15_2179 0.31 -0.7
2,290,694 - HP15_2179 0.31 -2.2
2,290,752 - HP15_2179 0.35 -1.8
2,290,856 + HP15_2179 0.42 -1.8
2,290,864 - HP15_2179 0.43 -1.5
2,290,864 - HP15_2179 0.43 +2.1
2,291,063 + HP15_2179 0.56 +0.5
2,291,156 - HP15_2179 0.63 -0.4
2,291,156 - HP15_2179 0.63 -0.8

Or see this region's nucleotide sequence