Strain Fitness in Marinobacter adhaerens HP15 around HP15_2136

Experiment: m.b. Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2134 and HP15_2135 are separated by 2 nucleotidesHP15_2135 and HP15_2136 overlap by 4 nucleotidesHP15_2136 and HP15_2137 are separated by 91 nucleotidesHP15_2137 and HP15_2138 are separated by 139 nucleotides HP15_2134: HP15_2134 - conserved hypothetical protein, at 2,236,110 to 2,237,111 _2134 HP15_2135: HP15_2135 - biopolymer transport protein ExbD/TolR, at 2,237,114 to 2,237,614 _2135 HP15_2136: HP15_2136 - biopolymer transport protein ExbD/TolR, at 2,237,611 to 2,238,057 _2136 HP15_2137: HP15_2137 - biopolymer transport protein, at 2,238,149 to 2,238,856 _2137 HP15_2138: HP15_2138 - conserved hypothetical protein, secreted, at 2,238,996 to 2,239,301 _2138 Position (kb) 2237 2238 2239Strain fitness (log2 ratio) -1 0 1 2 3at 2236.660 kb on + strand, within HP15_2134at 2236.699 kb on + strand, within HP15_2134at 2236.834 kb on + strand, within HP15_2134at 2236.834 kb on + strand, within HP15_2134at 2236.842 kb on - strand, within HP15_2134at 2236.985 kb on + strand, within HP15_2134at 2237.224 kb on + strand, within HP15_2135at 2237.263 kb on + strand, within HP15_2135at 2237.312 kb on + strand, within HP15_2135at 2237.318 kb on - strand, within HP15_2135at 2237.338 kb on - strand, within HP15_2135at 2237.402 kb on - strand, within HP15_2135at 2237.406 kb on - strand, within HP15_2135at 2237.459 kb on - strand, within HP15_2135at 2237.495 kb on - strand, within HP15_2135at 2237.706 kb on + strand, within HP15_2136at 2237.831 kb on + strand, within HP15_2136at 2237.839 kb on - strand, within HP15_2136at 2238.002 kb on + strand, within HP15_2136at 2238.002 kb on + strand, within HP15_2136at 2238.061 kb on - strandat 2238.300 kb on + strand, within HP15_2137at 2238.308 kb on - strand, within HP15_2137at 2238.318 kb on + strand, within HP15_2137at 2238.368 kb on + strand, within HP15_2137at 2238.465 kb on + strand, within HP15_2137at 2238.500 kb on - strand, within HP15_2137at 2238.523 kb on + strand, within HP15_2137at 2238.657 kb on + strand, within HP15_2137at 2238.889 kb on - strandat 2238.891 kb on + strandat 2238.954 kb on - strandat 2238.956 kb on - strandat 2238.996 kb on + strandat 2239.001 kb on + strandat 2239.004 kb on - strandat 2239.006 kb on + strandat 2239.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM
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2,236,660 + HP15_2134 0.55 -0.8
2,236,699 + HP15_2134 0.59 +0.7
2,236,834 + HP15_2134 0.72 +0.4
2,236,834 + HP15_2134 0.72 +0.4
2,236,842 - HP15_2134 0.73 +1.1
2,236,985 + HP15_2134 0.87 -0.4
2,237,224 + HP15_2135 0.22 -1.5
2,237,263 + HP15_2135 0.30 +2.8
2,237,312 + HP15_2135 0.40 +0.2
2,237,318 - HP15_2135 0.41 +0.2
2,237,338 - HP15_2135 0.45 -1.1
2,237,402 - HP15_2135 0.57 +0.4
2,237,406 - HP15_2135 0.58 +2.6
2,237,459 - HP15_2135 0.69 -0.2
2,237,495 - HP15_2135 0.76 -1.2
2,237,706 + HP15_2136 0.21 +1.6
2,237,831 + HP15_2136 0.49 -0.6
2,237,839 - HP15_2136 0.51 +1.2
2,238,002 + HP15_2136 0.87 -0.6
2,238,002 + HP15_2136 0.87 +0.6
2,238,061 - +0.2
2,238,300 + HP15_2137 0.21 -0.8
2,238,308 - HP15_2137 0.22 -0.2
2,238,318 + HP15_2137 0.24 -0.6
2,238,368 + HP15_2137 0.31 -1.4
2,238,465 + HP15_2137 0.45 -0.2
2,238,500 - HP15_2137 0.50 -0.9
2,238,523 + HP15_2137 0.53 +0.9
2,238,657 + HP15_2137 0.72 +1.3
2,238,889 - +0.0
2,238,891 + +0.1
2,238,954 - +0.2
2,238,956 - +0.8
2,238,996 + +0.3
2,239,001 + -1.0
2,239,004 - -0.3
2,239,006 + +0.1
2,239,014 - +0.3

Or see this region's nucleotide sequence