Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2170

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2169 and Psest_2170 overlap by 4 nucleotidesPsest_2170 and Psest_2171 overlap by 4 nucleotides Psest_2169: Psest_2169 - malto-oligosyltrehalose synthase, at 2,322,173 to 2,324,959 _2169 Psest_2170: Psest_2170 - 4-alpha-glucanotransferase, at 2,324,956 to 2,327,031 _2170 Psest_2171: Psest_2171 - malto-oligosyltrehalose trehalohydrolase, at 2,327,028 to 2,328,803 _2171 Position (kb) 2324 2325 2326 2327 2328Strain fitness (log2 ratio) -1 0 1 2 3at 2324.187 kb on + strand, within Psest_2169at 2324.247 kb on + strand, within Psest_2169at 2324.248 kb on - strand, within Psest_2169at 2324.248 kb on - strand, within Psest_2169at 2324.248 kb on - strand, within Psest_2169at 2324.248 kb on - strand, within Psest_2169at 2324.248 kb on - strand, within Psest_2169at 2324.248 kb on - strand, within Psest_2169at 2324.388 kb on - strand, within Psest_2169at 2324.388 kb on - strand, within Psest_2169at 2324.457 kb on + strand, within Psest_2169at 2324.469 kb on + strand, within Psest_2169at 2324.469 kb on + strand, within Psest_2169at 2324.470 kb on - strand, within Psest_2169at 2324.850 kb on + strandat 2324.850 kb on + strandat 2324.850 kb on + strandat 2324.850 kb on + strandat 2324.850 kb on + strandat 2324.850 kb on + strandat 2324.851 kb on - strandat 2324.851 kb on - strandat 2324.851 kb on - strandat 2324.854 kb on + strandat 2324.854 kb on + strandat 2324.880 kb on + strandat 2324.880 kb on + strandat 2325.239 kb on + strand, within Psest_2170at 2325.239 kb on + strand, within Psest_2170at 2325.240 kb on - strand, within Psest_2170at 2325.615 kb on - strand, within Psest_2170at 2325.615 kb on - strand, within Psest_2170at 2325.732 kb on - strand, within Psest_2170at 2325.995 kb on + strand, within Psest_2170at 2325.995 kb on + strand, within Psest_2170at 2326.234 kb on + strand, within Psest_2170at 2326.235 kb on - strand, within Psest_2170at 2326.562 kb on + strand, within Psest_2170at 2326.562 kb on + strand, within Psest_2170at 2326.562 kb on + strand, within Psest_2170at 2326.562 kb on + strand, within Psest_2170at 2326.712 kb on + strand, within Psest_2170at 2326.781 kb on + strand, within Psest_2170at 2326.782 kb on - strand, within Psest_2170at 2326.922 kb on - strandat 2327.048 kb on - strandat 2327.060 kb on + strandat 2327.301 kb on + strand, within Psest_2171at 2327.752 kb on + strand, within Psest_2171at 2327.752 kb on + strand, within Psest_2171at 2327.752 kb on + strand, within Psest_2171at 2327.819 kb on - strand, within Psest_2171at 2327.819 kb on - strand, within Psest_2171

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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2,324,187 + Psest_2169 0.72 +1.3
2,324,247 + Psest_2169 0.74 +1.7
2,324,248 - Psest_2169 0.74 +0.4
2,324,248 - Psest_2169 0.74 -0.0
2,324,248 - Psest_2169 0.74 +0.8
2,324,248 - Psest_2169 0.74 +0.6
2,324,248 - Psest_2169 0.74 +1.1
2,324,248 - Psest_2169 0.74 +0.7
2,324,388 - Psest_2169 0.79 +0.7
2,324,388 - Psest_2169 0.79 -0.0
2,324,457 + Psest_2169 0.82 +3.0
2,324,469 + Psest_2169 0.82 -0.8
2,324,469 + Psest_2169 0.82 +0.3
2,324,470 - Psest_2169 0.82 +0.2
2,324,850 + -1.3
2,324,850 + +0.0
2,324,850 + +0.6
2,324,850 + -0.4
2,324,850 + +1.6
2,324,850 + +0.6
2,324,851 - +0.3
2,324,851 - +0.3
2,324,851 - +0.3
2,324,854 + +0.8
2,324,854 + +1.3
2,324,880 + +0.6
2,324,880 + -0.0
2,325,239 + Psest_2170 0.14 +1.0
2,325,239 + Psest_2170 0.14 +1.2
2,325,240 - Psest_2170 0.14 +0.1
2,325,615 - Psest_2170 0.32 +0.6
2,325,615 - Psest_2170 0.32 +0.5
2,325,732 - Psest_2170 0.37 -0.6
2,325,995 + Psest_2170 0.50 +0.7
2,325,995 + Psest_2170 0.50 -0.2
2,326,234 + Psest_2170 0.62 +1.3
2,326,235 - Psest_2170 0.62 +1.4
2,326,562 + Psest_2170 0.77 -0.7
2,326,562 + Psest_2170 0.77 -0.0
2,326,562 + Psest_2170 0.77 -0.0
2,326,562 + Psest_2170 0.77 +0.6
2,326,712 + Psest_2170 0.85 +0.7
2,326,781 + Psest_2170 0.88 +0.1
2,326,782 - Psest_2170 0.88 +1.8
2,326,922 - +0.8
2,327,048 - +2.0
2,327,060 + -0.6
2,327,301 + Psest_2171 0.15 +0.2
2,327,752 + Psest_2171 0.41 +3.3
2,327,752 + Psest_2171 0.41 +0.7
2,327,752 + Psest_2171 0.41 -0.6
2,327,819 - Psest_2171 0.45 +0.5
2,327,819 - Psest_2171 0.45 +0.4

Or see this region's nucleotide sequence