Experiment: m.b. Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2065 and HP15_2066 are separated by 5 nucleotides HP15_2066 and HP15_2067 are separated by 72 nucleotides HP15_2067 and HP15_2068 are separated by 105 nucleotides HP15_2068 and HP15_2069 overlap by 13 nucleotides
HP15_2065: HP15_2065 - biopolymer transport protein ExbD/TolR, at 2,165,869 to 2,166,294
_2065
HP15_2066: HP15_2066 - MotA/TolQ/ExbB proton channel family protein, at 2,166,300 to 2,166,926
_2066
HP15_2067: HP15_2067 - DNA internalization-related competence protein ComEC/Rec2, at 2,166,999 to 2,169,407
_2067
HP15_2068: HP15_2068 - conserved hypothetical protein, membrane, at 2,169,513 to 2,170,058
_2068
HP15_2069: HP15_2069 - lipoprotein-releasing system ATP-binding protein LolD, at 2,170,046 to 2,170,735
_2069
Position (kb)
2166
2167
2168
2169
2170 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2166.348 kb on - strand at 2166.983 kb on + strand at 2167.016 kb on + strand at 2167.016 kb on + strand at 2167.024 kb on - strand at 2167.028 kb on + strand at 2167.042 kb on + strand at 2167.050 kb on - strand at 2167.149 kb on - strand at 2167.186 kb on + strand at 2167.188 kb on - strand at 2167.228 kb on + strand at 2167.236 kb on - strand at 2167.250 kb on - strand, within HP15_2067 at 2167.393 kb on + strand, within HP15_2067 at 2167.393 kb on + strand, within HP15_2067 at 2167.435 kb on + strand, within HP15_2067 at 2167.535 kb on + strand, within HP15_2067 at 2167.691 kb on - strand, within HP15_2067 at 2167.775 kb on - strand, within HP15_2067 at 2167.861 kb on + strand, within HP15_2067 at 2167.914 kb on + strand, within HP15_2067 at 2167.994 kb on - strand, within HP15_2067 at 2167.996 kb on + strand, within HP15_2067 at 2168.006 kb on - strand, within HP15_2067 at 2168.031 kb on - strand, within HP15_2067 at 2168.122 kb on - strand, within HP15_2067 at 2168.128 kb on - strand, within HP15_2067 at 2168.229 kb on - strand, within HP15_2067 at 2168.231 kb on + strand, within HP15_2067 at 2168.239 kb on - strand, within HP15_2067 at 2168.333 kb on - strand, within HP15_2067 at 2168.414 kb on - strand, within HP15_2067 at 2168.548 kb on + strand, within HP15_2067 at 2168.573 kb on + strand, within HP15_2067 at 2168.664 kb on - strand, within HP15_2067 at 2168.668 kb on + strand, within HP15_2067 at 2168.668 kb on + strand, within HP15_2067 at 2168.684 kb on - strand, within HP15_2067 at 2168.709 kb on - strand, within HP15_2067 at 2168.828 kb on + strand, within HP15_2067 at 2168.912 kb on - strand, within HP15_2067 at 2168.974 kb on - strand, within HP15_2067 at 2168.983 kb on + strand, within HP15_2067 at 2168.991 kb on - strand, within HP15_2067 at 2169.016 kb on + strand, within HP15_2067 at 2169.027 kb on + strand, within HP15_2067 at 2169.079 kb on + strand, within HP15_2067 at 2169.193 kb on + strand at 2169.193 kb on + strand at 2169.201 kb on - strand at 2169.201 kb on - strand at 2169.201 kb on - strand at 2169.201 kb on - strand at 2169.216 kb on + strand at 2169.259 kb on + strand at 2169.284 kb on - strand at 2169.305 kb on + strand at 2169.355 kb on - strand at 2169.369 kb on + strand at 2169.817 kb on + strand, within HP15_2068
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM remove 2,166,348 - -1.0 2,166,983 + +0.0 2,167,016 + +0.4 2,167,016 + +0.0 2,167,024 - -2.1 2,167,028 + +0.6 2,167,042 + +1.2 2,167,050 - -2.8 2,167,149 - -0.6 2,167,186 + +0.7 2,167,188 - +1.4 2,167,228 + -0.7 2,167,236 - -0.1 2,167,250 - HP15_2067 0.10 -0.1 2,167,393 + HP15_2067 0.16 -0.4 2,167,393 + HP15_2067 0.16 -0.6 2,167,435 + HP15_2067 0.18 -0.5 2,167,535 + HP15_2067 0.22 -1.3 2,167,691 - HP15_2067 0.29 -1.0 2,167,775 - HP15_2067 0.32 -2.5 2,167,861 + HP15_2067 0.36 +1.3 2,167,914 + HP15_2067 0.38 -0.8 2,167,994 - HP15_2067 0.41 -0.6 2,167,996 + HP15_2067 0.41 -0.0 2,168,006 - HP15_2067 0.42 -2.2 2,168,031 - HP15_2067 0.43 +0.9 2,168,122 - HP15_2067 0.47 -0.9 2,168,128 - HP15_2067 0.47 -1.3 2,168,229 - HP15_2067 0.51 -0.8 2,168,231 + HP15_2067 0.51 -1.0 2,168,239 - HP15_2067 0.51 +2.0 2,168,333 - HP15_2067 0.55 -0.8 2,168,414 - HP15_2067 0.59 -1.2 2,168,548 + HP15_2067 0.64 -0.0 2,168,573 + HP15_2067 0.65 -1.4 2,168,664 - HP15_2067 0.69 -0.2 2,168,668 + HP15_2067 0.69 +0.5 2,168,668 + HP15_2067 0.69 +1.0 2,168,684 - HP15_2067 0.70 +0.1 2,168,709 - HP15_2067 0.71 +1.6 2,168,828 + HP15_2067 0.76 +0.1 2,168,912 - HP15_2067 0.79 +0.3 2,168,974 - HP15_2067 0.82 -0.1 2,168,983 + HP15_2067 0.82 +0.2 2,168,991 - HP15_2067 0.83 -0.9 2,169,016 + HP15_2067 0.84 -0.3 2,169,027 + HP15_2067 0.84 +0.2 2,169,079 + HP15_2067 0.86 -0.2 2,169,193 + +1.2 2,169,193 + +1.0 2,169,201 - +1.7 2,169,201 - +0.9 2,169,201 - +1.7 2,169,201 - +0.4 2,169,216 + +0.4 2,169,259 + -0.1 2,169,284 - -1.2 2,169,305 + -1.3 2,169,355 - -0.6 2,169,369 + -0.8 2,169,817 + HP15_2068 0.56 -1.4
Or see this region's nucleotide sequence