Experiment: m.b. Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1582 and HP15_1583 are separated by 186 nucleotides HP15_1583 and HP15_1584 are separated by 295 nucleotides
HP15_1582: HP15_1582 - type III restriction enzyme, res subunit, at 1,670,424 to 1,673,453
_1582
HP15_1583: HP15_1583 - conserved hypothetical protein, at 1,673,640 to 1,674,194
_1583
HP15_1584: HP15_1584 - conserved hypothetical protein, at 1,674,490 to 1,675,980
_1584
Position (kb)
1673
1674
1675 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1672.682 kb on + strand, within HP15_1582 at 1672.705 kb on - strand, within HP15_1582 at 1672.909 kb on - strand, within HP15_1582 at 1672.945 kb on - strand, within HP15_1582 at 1672.982 kb on + strand, within HP15_1582 at 1673.015 kb on - strand, within HP15_1582 at 1673.083 kb on - strand, within HP15_1582 at 1673.164 kb on - strand at 1673.181 kb on - strand at 1673.181 kb on - strand at 1673.181 kb on - strand at 1673.203 kb on - strand at 1673.308 kb on + strand at 1673.359 kb on + strand at 1673.405 kb on + strand at 1673.405 kb on + strand at 1673.405 kb on + strand at 1673.508 kb on + strand at 1673.513 kb on + strand at 1673.542 kb on + strand at 1673.557 kb on - strand at 1673.605 kb on - strand at 1673.621 kb on - strand at 1673.819 kb on + strand, within HP15_1583 at 1673.829 kb on + strand, within HP15_1583 at 1673.837 kb on - strand, within HP15_1583 at 1673.839 kb on - strand, within HP15_1583 at 1673.928 kb on + strand, within HP15_1583 at 1674.021 kb on - strand, within HP15_1583 at 1674.023 kb on + strand, within HP15_1583 at 1674.090 kb on - strand, within HP15_1583 at 1674.153 kb on + strand at 1674.241 kb on - strand at 1674.252 kb on + strand at 1674.289 kb on + strand at 1674.297 kb on - strand at 1674.328 kb on + strand at 1674.361 kb on - strand at 1674.371 kb on - strand at 1674.725 kb on - strand, within HP15_1584 at 1674.885 kb on - strand, within HP15_1584 at 1674.952 kb on - strand, within HP15_1584 at 1675.077 kb on + strand, within HP15_1584 at 1675.085 kb on - strand, within HP15_1584 at 1675.095 kb on + strand, within HP15_1584 at 1675.136 kb on - strand, within HP15_1584
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM remove 1,672,682 + HP15_1582 0.75 +1.0 1,672,705 - HP15_1582 0.75 +0.1 1,672,909 - HP15_1582 0.82 -0.9 1,672,945 - HP15_1582 0.83 +0.2 1,672,982 + HP15_1582 0.84 +2.6 1,673,015 - HP15_1582 0.86 -0.7 1,673,083 - HP15_1582 0.88 -1.3 1,673,164 - +0.4 1,673,181 - +0.6 1,673,181 - +2.1 1,673,181 - +0.2 1,673,203 - +0.9 1,673,308 + -0.7 1,673,359 + -0.1 1,673,405 + -1.6 1,673,405 + +1.4 1,673,405 + +0.3 1,673,508 + +0.6 1,673,513 + +1.1 1,673,542 + -2.3 1,673,557 - -0.4 1,673,605 - +1.6 1,673,621 - +1.6 1,673,819 + HP15_1583 0.32 +0.1 1,673,829 + HP15_1583 0.34 -0.4 1,673,837 - HP15_1583 0.35 +0.5 1,673,839 - HP15_1583 0.36 -1.5 1,673,928 + HP15_1583 0.52 -2.1 1,674,021 - HP15_1583 0.69 -0.2 1,674,023 + HP15_1583 0.69 -0.1 1,674,090 - HP15_1583 0.81 -1.0 1,674,153 + +1.3 1,674,241 - -0.1 1,674,252 + +0.9 1,674,289 + -2.1 1,674,297 - +0.6 1,674,328 + -0.2 1,674,361 - -0.2 1,674,371 - +0.3 1,674,725 - HP15_1584 0.16 -0.1 1,674,885 - HP15_1584 0.26 -0.3 1,674,952 - HP15_1584 0.31 +1.4 1,675,077 + HP15_1584 0.39 -1.6 1,675,085 - HP15_1584 0.40 +1.5 1,675,095 + HP15_1584 0.41 -0.1 1,675,136 - HP15_1584 0.43 +3.0
Or see this region's nucleotide sequence