Strain Fitness in Marinobacter adhaerens HP15 around HP15_1533

Experiment: m.b. Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1531 and HP15_1532 are separated by 284 nucleotidesHP15_1532 and HP15_1533 are separated by 1 nucleotidesHP15_1533 and HP15_1534 are separated by 122 nucleotides HP15_1531: HP15_1531 - diguanylate cyclase (GGDEF domain), at 1,612,594 to 1,613,520 _1531 HP15_1532: HP15_1532 - transcriptional regulator, GntR family, at 1,613,805 to 1,614,488 _1532 HP15_1533: HP15_1533 - chromosome segregation protein SMC, at 1,614,490 to 1,617,984 _1533 HP15_1534: HP15_1534 - cell division protein ZipA-like protein, at 1,618,107 to 1,619,120 _1534 Position (kb) 1614 1615 1616 1617 1618Strain fitness (log2 ratio) -1 0 1 2 3 4at 1613.707 kb on - strandat 1613.707 kb on - strandat 1613.717 kb on - strandat 1614.407 kb on + strand, within HP15_1532at 1614.547 kb on + strandat 1614.644 kb on + strandat 1614.698 kb on + strandat 1614.860 kb on - strand, within HP15_1533at 1614.935 kb on - strand, within HP15_1533at 1615.613 kb on - strand, within HP15_1533at 1615.682 kb on - strand, within HP15_1533at 1615.963 kb on - strand, within HP15_1533at 1616.006 kb on - strand, within HP15_1533at 1616.357 kb on + strand, within HP15_1533at 1616.365 kb on - strand, within HP15_1533at 1616.489 kb on + strand, within HP15_1533at 1616.661 kb on - strand, within HP15_1533at 1616.919 kb on - strand, within HP15_1533at 1616.930 kb on + strand, within HP15_1533at 1617.258 kb on + strand, within HP15_1533at 1617.408 kb on + strand, within HP15_1533at 1617.465 kb on + strand, within HP15_1533at 1617.540 kb on + strand, within HP15_1533at 1617.548 kb on - strand, within HP15_1533at 1617.604 kb on - strand, within HP15_1533at 1617.674 kb on - strandat 1617.797 kb on - strandat 1617.978 kb on + strandat 1617.987 kb on - strandat 1618.839 kb on + strand, within HP15_1534at 1618.893 kb on + strand, within HP15_1534

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM
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1,613,707 - +1.2
1,613,707 - +0.4
1,613,717 - +1.7
1,614,407 + HP15_1532 0.88 -1.6
1,614,547 + -0.6
1,614,644 + -0.4
1,614,698 + +2.1
1,614,860 - HP15_1533 0.11 +2.2
1,614,935 - HP15_1533 0.13 +4.0
1,615,613 - HP15_1533 0.32 +0.5
1,615,682 - HP15_1533 0.34 -1.1
1,615,963 - HP15_1533 0.42 +3.5
1,616,006 - HP15_1533 0.43 +1.6
1,616,357 + HP15_1533 0.53 +1.7
1,616,365 - HP15_1533 0.54 -1.1
1,616,489 + HP15_1533 0.57 +0.3
1,616,661 - HP15_1533 0.62 +0.1
1,616,919 - HP15_1533 0.69 +0.7
1,616,930 + HP15_1533 0.70 -0.5
1,617,258 + HP15_1533 0.79 +0.2
1,617,408 + HP15_1533 0.83 +0.9
1,617,465 + HP15_1533 0.85 +0.7
1,617,540 + HP15_1533 0.87 +0.3
1,617,548 - HP15_1533 0.87 +2.5
1,617,604 - HP15_1533 0.89 +0.8
1,617,674 - +0.2
1,617,797 - -1.7
1,617,978 + -0.1
1,617,987 - +0.7
1,618,839 + HP15_1534 0.72 -0.7
1,618,893 + HP15_1534 0.78 -0.7

Or see this region's nucleotide sequence