Experiment: m.b. Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1531 and HP15_1532 are separated by 284 nucleotides HP15_1532 and HP15_1533 are separated by 1 nucleotides HP15_1533 and HP15_1534 are separated by 122 nucleotides
HP15_1531: HP15_1531 - diguanylate cyclase (GGDEF domain), at 1,612,594 to 1,613,520
_1531
HP15_1532: HP15_1532 - transcriptional regulator, GntR family, at 1,613,805 to 1,614,488
_1532
HP15_1533: HP15_1533 - chromosome segregation protein SMC, at 1,614,490 to 1,617,984
_1533
HP15_1534: HP15_1534 - cell division protein ZipA-like protein, at 1,618,107 to 1,619,120
_1534
Position (kb)
1614
1615
1616
1617
1618 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1613.707 kb on - strand at 1613.707 kb on - strand at 1613.717 kb on - strand at 1614.407 kb on + strand, within HP15_1532 at 1614.547 kb on + strand at 1614.644 kb on + strand at 1614.698 kb on + strand at 1614.860 kb on - strand, within HP15_1533 at 1614.935 kb on - strand, within HP15_1533 at 1615.613 kb on - strand, within HP15_1533 at 1615.682 kb on - strand, within HP15_1533 at 1615.963 kb on - strand, within HP15_1533 at 1616.006 kb on - strand, within HP15_1533 at 1616.357 kb on + strand, within HP15_1533 at 1616.365 kb on - strand, within HP15_1533 at 1616.489 kb on + strand, within HP15_1533 at 1616.661 kb on - strand, within HP15_1533 at 1616.919 kb on - strand, within HP15_1533 at 1616.930 kb on + strand, within HP15_1533 at 1617.258 kb on + strand, within HP15_1533 at 1617.408 kb on + strand, within HP15_1533 at 1617.465 kb on + strand, within HP15_1533 at 1617.540 kb on + strand, within HP15_1533 at 1617.548 kb on - strand, within HP15_1533 at 1617.604 kb on - strand, within HP15_1533 at 1617.674 kb on - strand at 1617.797 kb on - strand at 1617.978 kb on + strand at 1617.987 kb on - strand at 1618.839 kb on + strand, within HP15_1534 at 1618.893 kb on + strand, within HP15_1534
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM remove 1,613,707 - +1.2 1,613,707 - +0.4 1,613,717 - +1.7 1,614,407 + HP15_1532 0.88 -1.6 1,614,547 + -0.6 1,614,644 + -0.4 1,614,698 + +2.1 1,614,860 - HP15_1533 0.11 +2.2 1,614,935 - HP15_1533 0.13 +4.0 1,615,613 - HP15_1533 0.32 +0.5 1,615,682 - HP15_1533 0.34 -1.1 1,615,963 - HP15_1533 0.42 +3.5 1,616,006 - HP15_1533 0.43 +1.6 1,616,357 + HP15_1533 0.53 +1.7 1,616,365 - HP15_1533 0.54 -1.1 1,616,489 + HP15_1533 0.57 +0.3 1,616,661 - HP15_1533 0.62 +0.1 1,616,919 - HP15_1533 0.69 +0.7 1,616,930 + HP15_1533 0.70 -0.5 1,617,258 + HP15_1533 0.79 +0.2 1,617,408 + HP15_1533 0.83 +0.9 1,617,465 + HP15_1533 0.85 +0.7 1,617,540 + HP15_1533 0.87 +0.3 1,617,548 - HP15_1533 0.87 +2.5 1,617,604 - HP15_1533 0.89 +0.8 1,617,674 - +0.2 1,617,797 - -1.7 1,617,978 + -0.1 1,617,987 - +0.7 1,618,839 + HP15_1534 0.72 -0.7 1,618,893 + HP15_1534 0.78 -0.7
Or see this region's nucleotide sequence