Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1470

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1467 and Psest_1468 are separated by 32 nucleotidesPsest_1468 and Psest_1469 are separated by 14 nucleotidesPsest_1469 and Psest_1470 are separated by 38 nucleotidesPsest_1470 and Psest_1471 are separated by 50 nucleotidesPsest_1471 and Psest_1472 are separated by 58 nucleotides Psest_1467: Psest_1467 - Thioredoxin., at 1,574,456 to 1,574,881 _1467 Psest_1468: Psest_1468 - hypothetical protein, at 1,574,914 to 1,575,159 _1468 Psest_1469: Psest_1469 - hypothetical protein, at 1,575,174 to 1,575,335 _1469 Psest_1470: Psest_1470 - succinyldiaminopimelate transaminase, at 1,575,374 to 1,576,570 _1470 Psest_1471: Psest_1471 - Predicted membrane protein, at 1,576,621 to 1,577,286 _1471 Psest_1472: Psest_1472 - Protein of unknown function (DUF3108)., at 1,577,345 to 1,578,055 _1472 Position (kb) 1575 1576 1577Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1574.766 kb on + strand, within Psest_1467at 1574.766 kb on + strand, within Psest_1467at 1574.766 kb on + strand, within Psest_1467at 1574.766 kb on + strand, within Psest_1467at 1574.766 kb on + strand, within Psest_1467at 1574.767 kb on - strand, within Psest_1467at 1574.767 kb on - strand, within Psest_1467at 1574.767 kb on - strand, within Psest_1467at 1574.777 kb on + strand, within Psest_1467at 1574.777 kb on + strand, within Psest_1467at 1574.777 kb on + strand, within Psest_1467at 1574.777 kb on + strand, within Psest_1467at 1574.777 kb on + strand, within Psest_1467at 1574.777 kb on + strand, within Psest_1467at 1574.777 kb on + strand, within Psest_1467at 1574.777 kb on + strand, within Psest_1467at 1574.777 kb on + strand, within Psest_1467at 1574.778 kb on - strand, within Psest_1467at 1574.778 kb on - strand, within Psest_1467at 1574.778 kb on - strand, within Psest_1467at 1574.802 kb on + strand, within Psest_1467at 1574.803 kb on - strand, within Psest_1467at 1574.803 kb on - strand, within Psest_1467at 1574.861 kb on + strandat 1574.861 kb on + strandat 1574.861 kb on + strandat 1574.862 kb on - strandat 1574.862 kb on - strandat 1574.912 kb on + strandat 1574.912 kb on + strandat 1574.912 kb on + strandat 1574.913 kb on - strandat 1575.029 kb on + strand, within Psest_1468at 1575.102 kb on + strand, within Psest_1468at 1575.110 kb on + strand, within Psest_1468at 1575.110 kb on + strand, within Psest_1468at 1575.173 kb on + strandat 1575.173 kb on + strandat 1575.174 kb on - strandat 1575.174 kb on - strandat 1575.498 kb on + strand, within Psest_1470at 1575.513 kb on - strand, within Psest_1470at 1575.585 kb on + strand, within Psest_1470at 1575.585 kb on + strand, within Psest_1470at 1575.585 kb on + strand, within Psest_1470at 1575.586 kb on - strand, within Psest_1470at 1575.586 kb on - strand, within Psest_1470at 1575.586 kb on - strand, within Psest_1470at 1575.586 kb on - strand, within Psest_1470at 1575.586 kb on - strand, within Psest_1470at 1575.586 kb on - strand, within Psest_1470at 1575.586 kb on - strand, within Psest_1470at 1575.586 kb on - strand, within Psest_1470at 1575.586 kb on - strand, within Psest_1470at 1575.680 kb on + strand, within Psest_1470at 1575.681 kb on - strand, within Psest_1470at 1575.750 kb on + strand, within Psest_1470at 1575.750 kb on + strand, within Psest_1470at 1575.751 kb on - strand, within Psest_1470at 1575.751 kb on - strand, within Psest_1470at 1575.751 kb on - strand, within Psest_1470at 1575.751 kb on - strand, within Psest_1470at 1575.867 kb on + strand, within Psest_1470at 1575.867 kb on + strand, within Psest_1470at 1575.868 kb on - strand, within Psest_1470at 1575.868 kb on - strand, within Psest_1470at 1575.934 kb on - strand, within Psest_1470at 1575.934 kb on - strand, within Psest_1470at 1575.934 kb on - strand, within Psest_1470at 1575.946 kb on - strand, within Psest_1470at 1576.140 kb on + strand, within Psest_1470at 1576.140 kb on + strand, within Psest_1470at 1576.140 kb on + strand, within Psest_1470at 1576.179 kb on + strand, within Psest_1470at 1576.179 kb on + strand, within Psest_1470at 1576.180 kb on - strand, within Psest_1470at 1576.180 kb on - strand, within Psest_1470at 1576.188 kb on + strand, within Psest_1470at 1576.189 kb on - strand, within Psest_1470at 1576.189 kb on - strand, within Psest_1470at 1576.189 kb on - strand, within Psest_1470at 1576.392 kb on - strand, within Psest_1470at 1576.470 kb on - strandat 1576.643 kb on + strandat 1576.644 kb on - strandat 1576.644 kb on - strandat 1576.779 kb on + strand, within Psest_1471at 1576.970 kb on + strand, within Psest_1471at 1576.974 kb on + strand, within Psest_1471at 1576.975 kb on - strand, within Psest_1471at 1576.975 kb on - strand, within Psest_1471at 1576.975 kb on - strand, within Psest_1471at 1576.984 kb on - strand, within Psest_1471at 1577.097 kb on + strand, within Psest_1471at 1577.097 kb on + strand, within Psest_1471at 1577.097 kb on + strand, within Psest_1471at 1577.097 kb on + strand, within Psest_1471at 1577.098 kb on - strand, within Psest_1471at 1577.400 kb on + strandat 1577.445 kb on + strand, within Psest_1472at 1577.446 kb on - strand, within Psest_1472at 1577.446 kb on - strand, within Psest_1472at 1577.446 kb on - strand, within Psest_1472at 1577.446 kb on - strand, within Psest_1472at 1577.446 kb on - strand, within Psest_1472at 1577.446 kb on - strand, within Psest_1472at 1577.567 kb on + strand, within Psest_1472at 1577.567 kb on + strand, within Psest_1472at 1577.567 kb on + strand, within Psest_1472at 1577.567 kb on + strand, within Psest_1472

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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1,574,766 + Psest_1467 0.73 +1.1
1,574,766 + Psest_1467 0.73 -0.1
1,574,766 + Psest_1467 0.73 -0.2
1,574,766 + Psest_1467 0.73 -0.9
1,574,766 + Psest_1467 0.73 +0.1
1,574,767 - Psest_1467 0.73 +0.6
1,574,767 - Psest_1467 0.73 -1.5
1,574,767 - Psest_1467 0.73 -1.3
1,574,777 + Psest_1467 0.75 +0.6
1,574,777 + Psest_1467 0.75 +0.1
1,574,777 + Psest_1467 0.75 -1.6
1,574,777 + Psest_1467 0.75 -0.1
1,574,777 + Psest_1467 0.75 -0.9
1,574,777 + Psest_1467 0.75 +0.2
1,574,777 + Psest_1467 0.75 -1.8
1,574,777 + Psest_1467 0.75 -0.5
1,574,777 + Psest_1467 0.75 +1.0
1,574,778 - Psest_1467 0.76 +0.3
1,574,778 - Psest_1467 0.76 +0.5
1,574,778 - Psest_1467 0.76 +0.6
1,574,802 + Psest_1467 0.81 -0.7
1,574,803 - Psest_1467 0.81 -0.8
1,574,803 - Psest_1467 0.81 -1.1
1,574,861 + -0.1
1,574,861 + -0.3
1,574,861 + -0.0
1,574,862 - +0.8
1,574,862 - -0.2
1,574,912 + -0.3
1,574,912 + +0.5
1,574,912 + +0.6
1,574,913 - +0.5
1,575,029 + Psest_1468 0.47 -0.8
1,575,102 + Psest_1468 0.76 +0.1
1,575,110 + Psest_1468 0.80 +0.9
1,575,110 + Psest_1468 0.80 +0.2
1,575,173 + -0.8
1,575,173 + +0.9
1,575,174 - +0.0
1,575,174 - +0.0
1,575,498 + Psest_1470 0.10 +0.4
1,575,513 - Psest_1470 0.12 +0.0
1,575,585 + Psest_1470 0.18 -1.9
1,575,585 + Psest_1470 0.18 -3.4
1,575,585 + Psest_1470 0.18 -0.6
1,575,586 - Psest_1470 0.18 -0.6
1,575,586 - Psest_1470 0.18 -1.5
1,575,586 - Psest_1470 0.18 -0.5
1,575,586 - Psest_1470 0.18 +0.0
1,575,586 - Psest_1470 0.18 -0.9
1,575,586 - Psest_1470 0.18 -0.7
1,575,586 - Psest_1470 0.18 -0.0
1,575,586 - Psest_1470 0.18 -2.3
1,575,586 - Psest_1470 0.18 +0.1
1,575,680 + Psest_1470 0.26 -0.6
1,575,681 - Psest_1470 0.26 -0.5
1,575,750 + Psest_1470 0.31 -2.1
1,575,750 + Psest_1470 0.31 -1.3
1,575,751 - Psest_1470 0.31 -1.3
1,575,751 - Psest_1470 0.31 -0.6
1,575,751 - Psest_1470 0.31 -1.9
1,575,751 - Psest_1470 0.31 -1.3
1,575,867 + Psest_1470 0.41 -0.2
1,575,867 + Psest_1470 0.41 +0.6
1,575,868 - Psest_1470 0.41 -2.3
1,575,868 - Psest_1470 0.41 +0.2
1,575,934 - Psest_1470 0.47 +0.3
1,575,934 - Psest_1470 0.47 +0.3
1,575,934 - Psest_1470 0.47 -1.0
1,575,946 - Psest_1470 0.48 -1.0
1,576,140 + Psest_1470 0.64 -0.6
1,576,140 + Psest_1470 0.64 -0.6
1,576,140 + Psest_1470 0.64 -2.3
1,576,179 + Psest_1470 0.67 +0.1
1,576,179 + Psest_1470 0.67 +0.4
1,576,180 - Psest_1470 0.67 -1.5
1,576,180 - Psest_1470 0.67 -1.0
1,576,188 + Psest_1470 0.68 -0.1
1,576,189 - Psest_1470 0.68 +0.0
1,576,189 - Psest_1470 0.68 -1.3
1,576,189 - Psest_1470 0.68 -0.6
1,576,392 - Psest_1470 0.85 +1.3
1,576,470 - +1.9
1,576,643 + -0.1
1,576,644 - +0.8
1,576,644 - -0.4
1,576,779 + Psest_1471 0.24 -0.1
1,576,970 + Psest_1471 0.52 -0.2
1,576,974 + Psest_1471 0.53 -0.4
1,576,975 - Psest_1471 0.53 +1.0
1,576,975 - Psest_1471 0.53 +0.0
1,576,975 - Psest_1471 0.53 -1.7
1,576,984 - Psest_1471 0.55 -0.8
1,577,097 + Psest_1471 0.71 -0.1
1,577,097 + Psest_1471 0.71 -0.7
1,577,097 + Psest_1471 0.71 -0.3
1,577,097 + Psest_1471 0.71 +0.7
1,577,098 - Psest_1471 0.72 +0.3
1,577,400 + -1.0
1,577,445 + Psest_1472 0.14 +0.4
1,577,446 - Psest_1472 0.14 +0.2
1,577,446 - Psest_1472 0.14 -0.3
1,577,446 - Psest_1472 0.14 +1.3
1,577,446 - Psest_1472 0.14 +0.4
1,577,446 - Psest_1472 0.14 -1.0
1,577,446 - Psest_1472 0.14 +1.2
1,577,567 + Psest_1472 0.31 -0.3
1,577,567 + Psest_1472 0.31 -1.7
1,577,567 + Psest_1472 0.31 -2.5
1,577,567 + Psest_1472 0.31 +0.1

Or see this region's nucleotide sequence