Strain Fitness in Marinobacter adhaerens HP15 around HP15_1386

Experiment: m.b. Vanillin 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1384 and HP15_1385 are separated by 95 nucleotidesHP15_1385 and HP15_1386 overlap by 1 nucleotidesHP15_1386 and HP15_1387 are separated by 12 nucleotidesHP15_1387 and HP15_1388 are separated by 168 nucleotides HP15_1384: HP15_1384 - lipolytic enzyme, G-D-S-L, at 1,459,300 to 1,459,887 _1384 HP15_1385: HP15_1385 - ABC transporter ATP-binding protein-like protein, at 1,459,983 to 1,460,711 _1385 HP15_1386: HP15_1386 - ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 1,460,711 to 1,463,197 _1386 HP15_1387: HP15_1387 - ABC-type amino acid transport/signal transduction system, periplasmic domain protein, at 1,463,210 to 1,463,992 _1387 HP15_1388: HP15_1388 - iron-containing alcohol dehydrogenase, at 1,464,161 to 1,465,348 _1388 Position (kb) 1460 1461 1462 1463 1464Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1459.741 kb on + strand, within HP15_1384at 1459.806 kb on - strand, within HP15_1384at 1459.810 kb on + strand, within HP15_1384at 1459.906 kb on + strandat 1459.920 kb on - strandat 1460.092 kb on + strand, within HP15_1385at 1460.151 kb on + strand, within HP15_1385at 1460.187 kb on + strand, within HP15_1385at 1460.229 kb on - strand, within HP15_1385at 1460.248 kb on - strand, within HP15_1385at 1460.409 kb on - strand, within HP15_1385at 1460.426 kb on - strand, within HP15_1385at 1460.431 kb on + strand, within HP15_1385at 1460.591 kb on + strand, within HP15_1385at 1460.601 kb on - strand, within HP15_1385at 1460.627 kb on + strand, within HP15_1385at 1460.691 kb on + strandat 1460.691 kb on + strandat 1460.814 kb on + strandat 1460.990 kb on + strand, within HP15_1386at 1461.084 kb on - strand, within HP15_1386at 1461.402 kb on - strand, within HP15_1386at 1461.527 kb on + strand, within HP15_1386at 1461.549 kb on + strand, within HP15_1386at 1461.557 kb on - strand, within HP15_1386at 1461.637 kb on + strand, within HP15_1386at 1461.795 kb on - strand, within HP15_1386at 1461.836 kb on + strand, within HP15_1386at 1462.012 kb on + strand, within HP15_1386at 1462.071 kb on - strand, within HP15_1386at 1462.183 kb on - strand, within HP15_1386at 1462.446 kb on + strand, within HP15_1386at 1462.458 kb on - strand, within HP15_1386at 1462.526 kb on - strand, within HP15_1386at 1462.562 kb on - strand, within HP15_1386at 1462.656 kb on + strand, within HP15_1386at 1462.697 kb on - strand, within HP15_1386at 1463.072 kb on - strandat 1463.250 kb on + strandat 1463.319 kb on - strand, within HP15_1387at 1463.443 kb on + strand, within HP15_1387at 1463.451 kb on - strand, within HP15_1387at 1463.476 kb on + strand, within HP15_1387at 1463.675 kb on + strand, within HP15_1387at 1463.683 kb on - strand, within HP15_1387at 1463.692 kb on - strand, within HP15_1387at 1463.751 kb on + strand, within HP15_1387at 1463.827 kb on - strand, within HP15_1387at 1463.887 kb on + strand, within HP15_1387at 1463.887 kb on + strand, within HP15_1387at 1463.887 kb on + strand, within HP15_1387at 1464.002 kb on - strandat 1464.176 kb on + strandat 1464.176 kb on + strandat 1464.184 kb on - strandat 1464.184 kb on - strandat 1464.184 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM
remove
1,459,741 + HP15_1384 0.75 +0.4
1,459,806 - HP15_1384 0.86 -1.8
1,459,810 + HP15_1384 0.87 -0.3
1,459,906 + +1.2
1,459,920 - +0.3
1,460,092 + HP15_1385 0.15 -3.2
1,460,151 + HP15_1385 0.23 +0.8
1,460,187 + HP15_1385 0.28 -0.7
1,460,229 - HP15_1385 0.34 -1.4
1,460,248 - HP15_1385 0.36 +1.7
1,460,409 - HP15_1385 0.58 +0.3
1,460,426 - HP15_1385 0.61 -1.9
1,460,431 + HP15_1385 0.61 +1.2
1,460,591 + HP15_1385 0.83 -0.4
1,460,601 - HP15_1385 0.85 -0.1
1,460,627 + HP15_1385 0.88 +0.4
1,460,691 + -0.2
1,460,691 + -0.7
1,460,814 + -2.0
1,460,990 + HP15_1386 0.11 -0.1
1,461,084 - HP15_1386 0.15 +1.7
1,461,402 - HP15_1386 0.28 +0.2
1,461,527 + HP15_1386 0.33 -2.3
1,461,549 + HP15_1386 0.34 +0.2
1,461,557 - HP15_1386 0.34 +0.4
1,461,637 + HP15_1386 0.37 +0.2
1,461,795 - HP15_1386 0.44 +0.4
1,461,836 + HP15_1386 0.45 -0.2
1,462,012 + HP15_1386 0.52 +2.3
1,462,071 - HP15_1386 0.55 +1.3
1,462,183 - HP15_1386 0.59 -0.7
1,462,446 + HP15_1386 0.70 +0.7
1,462,458 - HP15_1386 0.70 +0.5
1,462,526 - HP15_1386 0.73 +0.4
1,462,562 - HP15_1386 0.74 +1.7
1,462,656 + HP15_1386 0.78 +0.2
1,462,697 - HP15_1386 0.80 +1.2
1,463,072 - +0.7
1,463,250 + +0.3
1,463,319 - HP15_1387 0.14 +0.1
1,463,443 + HP15_1387 0.30 +0.7
1,463,451 - HP15_1387 0.31 -0.6
1,463,476 + HP15_1387 0.34 +1.2
1,463,675 + HP15_1387 0.59 -0.1
1,463,683 - HP15_1387 0.60 +0.4
1,463,692 - HP15_1387 0.62 -0.9
1,463,751 + HP15_1387 0.69 -2.5
1,463,827 - HP15_1387 0.79 +1.0
1,463,887 + HP15_1387 0.86 +0.4
1,463,887 + HP15_1387 0.86 -0.7
1,463,887 + HP15_1387 0.86 +0.6
1,464,002 - +0.3
1,464,176 + -2.7
1,464,176 + +0.4
1,464,184 - +0.4
1,464,184 - +0.2
1,464,184 - +1.7

Or see this region's nucleotide sequence