Strain Fitness in Marinobacter adhaerens HP15 around HP15_1375

Experiment: m.b. Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1374 and HP15_1375 are separated by 19 nucleotidesHP15_1375 and HP15_1376 are separated by 391 nucleotidesHP15_1376 and HP15_1377 are separated by 57 nucleotides HP15_1374: HP15_1374 - glutathione synthase/ribosomal protein S6 modification enzyme, at 1,448,426 to 1,449,973 _1374 HP15_1375: HP15_1375 - cation diffusion facilitator family transporter, at 1,449,993 to 1,451,151 _1375 HP15_1376: HP15_1376 - hypothetical protein, at 1,451,543 to 1,451,647 _1376 HP15_1377: HP15_1377 - dihydroorotate dehydrogenase, at 1,451,705 to 1,452,580 _1377 Position (kb) 1449 1450 1451 1452Strain fitness (log2 ratio) -2 -1 0 1at 1449.100 kb on + strand, within HP15_1374at 1449.186 kb on - strand, within HP15_1374at 1449.304 kb on + strand, within HP15_1374at 1449.445 kb on + strand, within HP15_1374at 1449.603 kb on - strand, within HP15_1374at 1449.913 kb on + strandat 1449.958 kb on + strandat 1450.011 kb on + strandat 1450.019 kb on - strandat 1450.093 kb on - strandat 1450.114 kb on - strand, within HP15_1375at 1450.197 kb on - strand, within HP15_1375at 1450.199 kb on + strand, within HP15_1375at 1450.266 kb on + strand, within HP15_1375at 1450.279 kb on + strand, within HP15_1375at 1450.284 kb on + strand, within HP15_1375at 1450.482 kb on - strand, within HP15_1375at 1450.532 kb on - strand, within HP15_1375at 1450.574 kb on + strand, within HP15_1375at 1450.579 kb on + strand, within HP15_1375at 1450.778 kb on - strand, within HP15_1375at 1450.780 kb on + strand, within HP15_1375at 1450.827 kb on - strand, within HP15_1375at 1450.852 kb on + strand, within HP15_1375at 1450.860 kb on - strand, within HP15_1375at 1450.937 kb on - strand, within HP15_1375at 1451.250 kb on - strandat 1451.752 kb on - strandat 1452.098 kb on - strand, within HP15_1377

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM
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1,449,100 + HP15_1374 0.44 -1.3
1,449,186 - HP15_1374 0.49 -0.7
1,449,304 + HP15_1374 0.57 +0.2
1,449,445 + HP15_1374 0.66 +1.7
1,449,603 - HP15_1374 0.76 +0.2
1,449,913 + -0.6
1,449,958 + -1.2
1,450,011 + +0.6
1,450,019 - +0.7
1,450,093 - -1.1
1,450,114 - HP15_1375 0.10 +0.7
1,450,197 - HP15_1375 0.18 -2.1
1,450,199 + HP15_1375 0.18 +0.2
1,450,266 + HP15_1375 0.24 +0.1
1,450,279 + HP15_1375 0.25 +0.1
1,450,284 + HP15_1375 0.25 -1.8
1,450,482 - HP15_1375 0.42 -0.0
1,450,532 - HP15_1375 0.47 -0.6
1,450,574 + HP15_1375 0.50 +0.1
1,450,579 + HP15_1375 0.51 +0.7
1,450,778 - HP15_1375 0.68 -1.3
1,450,780 + HP15_1375 0.68 -0.2
1,450,827 - HP15_1375 0.72 +0.7
1,450,852 + HP15_1375 0.74 +0.2
1,450,860 - HP15_1375 0.75 -1.6
1,450,937 - HP15_1375 0.81 +0.7
1,451,250 - -1.3
1,451,752 - -1.6
1,452,098 - HP15_1377 0.45 -2.1

Or see this region's nucleotide sequence