Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1379

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1377 and Psest_1378 are separated by 12 nucleotidesPsest_1378 and Psest_1379 are separated by 58 nucleotidesPsest_1379 and Psest_1380 are separated by 214 nucleotides Psest_1377: Psest_1377 - hypothetical protein, at 1,487,077 to 1,487,757 _1377 Psest_1378: Psest_1378 - hypothetical protein, at 1,487,770 to 1,488,501 _1378 Psest_1379: Psest_1379 - hypothetical protein, at 1,488,560 to 1,488,916 _1379 Psest_1380: Psest_1380 - Di- and tricarboxylate transporters, at 1,489,131 to 1,490,978 _1380 Position (kb) 1488 1489Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1487.634 kb on - strand, within Psest_1377at 1487.753 kb on + strandat 1487.753 kb on + strandat 1487.753 kb on + strandat 1487.753 kb on + strandat 1487.753 kb on + strandat 1487.753 kb on + strandat 1487.753 kb on + strandat 1487.753 kb on + strandat 1487.753 kb on + strandat 1487.753 kb on + strandat 1487.754 kb on - strandat 1487.754 kb on - strandat 1487.754 kb on - strandat 1487.754 kb on - strandat 1487.754 kb on - strandat 1487.754 kb on - strandat 1487.754 kb on - strandat 1487.757 kb on + strandat 1487.758 kb on - strandat 1487.849 kb on + strand, within Psest_1378at 1487.849 kb on + strand, within Psest_1378at 1487.849 kb on + strand, within Psest_1378at 1487.849 kb on + strand, within Psest_1378at 1487.849 kb on + strand, within Psest_1378at 1487.849 kb on + strand, within Psest_1378at 1487.849 kb on + strand, within Psest_1378at 1487.850 kb on - strand, within Psest_1378at 1487.850 kb on - strand, within Psest_1378at 1487.850 kb on - strand, within Psest_1378at 1487.921 kb on - strand, within Psest_1378at 1488.057 kb on + strand, within Psest_1378at 1488.057 kb on + strand, within Psest_1378at 1488.058 kb on - strand, within Psest_1378at 1488.113 kb on + strand, within Psest_1378at 1488.224 kb on + strand, within Psest_1378at 1488.224 kb on + strand, within Psest_1378at 1488.224 kb on + strand, within Psest_1378at 1488.320 kb on + strand, within Psest_1378at 1488.320 kb on + strand, within Psest_1378at 1488.320 kb on + strand, within Psest_1378at 1488.320 kb on + strand, within Psest_1378at 1488.320 kb on + strand, within Psest_1378at 1488.321 kb on - strand, within Psest_1378at 1488.321 kb on - strand, within Psest_1378at 1488.321 kb on - strand, within Psest_1378at 1488.321 kb on - strand, within Psest_1378at 1488.321 kb on - strand, within Psest_1378at 1488.321 kb on - strand, within Psest_1378at 1488.321 kb on - strand, within Psest_1378at 1488.464 kb on + strandat 1488.464 kb on + strandat 1488.561 kb on + strandat 1488.562 kb on - strandat 1488.562 kb on - strandat 1488.708 kb on - strand, within Psest_1379at 1489.080 kb on - strandat 1489.080 kb on - strandat 1489.082 kb on + strandat 1489.082 kb on + strandat 1489.082 kb on + strandat 1489.082 kb on + strandat 1489.083 kb on - strandat 1489.551 kb on + strand, within Psest_1380at 1489.571 kb on + strand, within Psest_1380at 1489.572 kb on - strand, within Psest_1380at 1489.580 kb on - strand, within Psest_1380at 1489.710 kb on + strand, within Psest_1380at 1489.710 kb on + strand, within Psest_1380at 1489.710 kb on + strand, within Psest_1380at 1489.710 kb on + strand, within Psest_1380at 1489.710 kb on + strand, within Psest_1380at 1489.710 kb on + strand, within Psest_1380at 1489.711 kb on - strand, within Psest_1380at 1489.711 kb on - strand, within Psest_1380at 1489.711 kb on - strand, within Psest_1380at 1489.711 kb on - strand, within Psest_1380at 1489.711 kb on - strand, within Psest_1380at 1489.711 kb on - strand, within Psest_1380at 1489.711 kb on - strand, within Psest_1380

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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1,487,634 - Psest_1377 0.82 +2.4
1,487,753 + -0.7
1,487,753 + -0.0
1,487,753 + -0.6
1,487,753 + +0.5
1,487,753 + -0.0
1,487,753 + -0.9
1,487,753 + +0.5
1,487,753 + -0.0
1,487,753 + +0.9
1,487,753 + +0.3
1,487,754 - +0.4
1,487,754 - -1.3
1,487,754 - +0.7
1,487,754 - +1.0
1,487,754 - +1.5
1,487,754 - -1.3
1,487,754 - -0.4
1,487,757 + +2.0
1,487,758 - +1.5
1,487,849 + Psest_1378 0.11 -0.2
1,487,849 + Psest_1378 0.11 +0.4
1,487,849 + Psest_1378 0.11 -0.3
1,487,849 + Psest_1378 0.11 -1.2
1,487,849 + Psest_1378 0.11 -0.0
1,487,849 + Psest_1378 0.11 +0.6
1,487,849 + Psest_1378 0.11 +1.0
1,487,850 - Psest_1378 0.11 +4.9
1,487,850 - Psest_1378 0.11 +3.0
1,487,850 - Psest_1378 0.11 +2.3
1,487,921 - Psest_1378 0.21 +2.3
1,488,057 + Psest_1378 0.39 -1.8
1,488,057 + Psest_1378 0.39 -0.2
1,488,058 - Psest_1378 0.39 +2.9
1,488,113 + Psest_1378 0.47 -0.0
1,488,224 + Psest_1378 0.62 -2.9
1,488,224 + Psest_1378 0.62 +1.3
1,488,224 + Psest_1378 0.62 +0.1
1,488,320 + Psest_1378 0.75 -0.6
1,488,320 + Psest_1378 0.75 -1.3
1,488,320 + Psest_1378 0.75 +0.8
1,488,320 + Psest_1378 0.75 +0.4
1,488,320 + Psest_1378 0.75 -1.5
1,488,321 - Psest_1378 0.75 +3.3
1,488,321 - Psest_1378 0.75 +4.3
1,488,321 - Psest_1378 0.75 +2.6
1,488,321 - Psest_1378 0.75 +3.1
1,488,321 - Psest_1378 0.75 +2.9
1,488,321 - Psest_1378 0.75 +3.5
1,488,321 - Psest_1378 0.75 +1.4
1,488,464 + +0.7
1,488,464 + -0.0
1,488,561 + -1.0
1,488,562 - +3.2
1,488,562 - +2.8
1,488,708 - Psest_1379 0.41 -1.3
1,489,080 - +2.5
1,489,080 - +0.8
1,489,082 + +0.1
1,489,082 + -0.2
1,489,082 + +1.2
1,489,082 + -0.0
1,489,083 - +0.9
1,489,551 + Psest_1380 0.23 +1.0
1,489,571 + Psest_1380 0.24 -0.0
1,489,572 - Psest_1380 0.24 +0.8
1,489,580 - Psest_1380 0.24 +0.3
1,489,710 + Psest_1380 0.31 +2.6
1,489,710 + Psest_1380 0.31 +1.3
1,489,710 + Psest_1380 0.31 -0.0
1,489,710 + Psest_1380 0.31 -0.6
1,489,710 + Psest_1380 0.31 +0.4
1,489,710 + Psest_1380 0.31 -0.0
1,489,711 - Psest_1380 0.31 +0.4
1,489,711 - Psest_1380 0.31 +1.0
1,489,711 - Psest_1380 0.31 +0.3
1,489,711 - Psest_1380 0.31 +0.8
1,489,711 - Psest_1380 0.31 -0.4
1,489,711 - Psest_1380 0.31 +0.8
1,489,711 - Psest_1380 0.31 -1.0

Or see this region's nucleotide sequence