Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1334

Experiment: Nickel (II) chloride 0.8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1332 and Psest_1333 are separated by 220 nucleotidesPsest_1333 and Psest_1334 are separated by 275 nucleotidesPsest_1334 and Psest_1335 are separated by 224 nucleotides Psest_1332: Psest_1332 - alpha-1,6-glucosidases, pullulanase-type, at 1,433,195 to 1,436,314 _1332 Psest_1333: Psest_1333 - Acyl dehydratase, at 1,436,535 to 1,437,005 _1333 Psest_1334: Psest_1334 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 1,437,281 to 1,438,969 _1334 Psest_1335: Psest_1335 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data), at 1,439,194 to 1,440,885 _1335 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1436.342 kb on + strandat 1436.342 kb on + strandat 1436.342 kb on + strandat 1436.342 kb on + strandat 1436.342 kb on + strandat 1436.343 kb on - strandat 1436.343 kb on - strandat 1436.343 kb on - strandat 1436.411 kb on - strandat 1436.987 kb on + strandat 1437.076 kb on + strandat 1437.109 kb on + strandat 1437.110 kb on - strandat 1437.220 kb on + strandat 1437.221 kb on - strandat 1437.265 kb on - strandat 1437.434 kb on + strandat 1437.435 kb on - strandat 1437.581 kb on - strand, within Psest_1334at 1437.593 kb on - strand, within Psest_1334at 1437.606 kb on - strand, within Psest_1334at 1437.606 kb on - strand, within Psest_1334at 1437.606 kb on - strand, within Psest_1334at 1437.662 kb on + strand, within Psest_1334at 1437.662 kb on + strand, within Psest_1334at 1437.663 kb on - strand, within Psest_1334at 1437.671 kb on - strand, within Psest_1334at 1437.921 kb on - strand, within Psest_1334at 1437.921 kb on - strand, within Psest_1334at 1438.083 kb on - strand, within Psest_1334at 1438.087 kb on + strand, within Psest_1334at 1438.087 kb on + strand, within Psest_1334at 1438.087 kb on + strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.088 kb on - strand, within Psest_1334at 1438.091 kb on + strand, within Psest_1334at 1438.091 kb on + strand, within Psest_1334at 1438.091 kb on + strand, within Psest_1334at 1438.091 kb on + strand, within Psest_1334at 1438.091 kb on + strand, within Psest_1334at 1438.091 kb on + strand, within Psest_1334at 1438.091 kb on + strand, within Psest_1334at 1438.091 kb on + strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.092 kb on - strand, within Psest_1334at 1438.703 kb on + strand, within Psest_1334at 1438.877 kb on + strandat 1438.895 kb on + strandat 1438.895 kb on + strandat 1438.896 kb on - strandat 1438.896 kb on - strandat 1438.896 kb on - strandat 1438.899 kb on + strandat 1438.900 kb on - strandat 1438.900 kb on - strandat 1438.900 kb on - strandat 1438.938 kb on + strandat 1438.938 kb on + strandat 1438.939 kb on - strandat 1438.939 kb on - strandat 1438.939 kb on - strandat 1439.037 kb on + strandat 1439.047 kb on - strandat 1439.180 kb on + strandat 1439.217 kb on + strandat 1439.217 kb on + strandat 1439.221 kb on + strandat 1439.221 kb on + strandat 1439.283 kb on + strandat 1439.284 kb on - strandat 1439.284 kb on - strandat 1439.347 kb on + strandat 1439.348 kb on - strandat 1439.348 kb on - strandat 1439.359 kb on + strandat 1439.359 kb on + strandat 1439.359 kb on + strandat 1439.359 kb on + strandat 1439.359 kb on + strandat 1439.360 kb on - strandat 1439.360 kb on - strandat 1439.360 kb on - strandat 1439.360 kb on - strandat 1439.387 kb on - strand, within Psest_1335at 1439.387 kb on - strand, within Psest_1335at 1439.518 kb on + strand, within Psest_1335at 1439.518 kb on + strand, within Psest_1335at 1439.519 kb on - strand, within Psest_1335at 1439.519 kb on - strand, within Psest_1335at 1439.519 kb on - strand, within Psest_1335at 1439.519 kb on - strand, within Psest_1335at 1439.519 kb on - strand, within Psest_1335at 1439.573 kb on + strand, within Psest_1335at 1439.574 kb on - strand, within Psest_1335at 1439.574 kb on - strand, within Psest_1335at 1439.609 kb on + strand, within Psest_1335at 1439.609 kb on + strand, within Psest_1335at 1439.609 kb on + strand, within Psest_1335at 1439.609 kb on + strand, within Psest_1335at 1439.609 kb on + strand, within Psest_1335at 1439.609 kb on + strand, within Psest_1335at 1439.609 kb on + strand, within Psest_1335at 1439.609 kb on + strand, within Psest_1335at 1439.609 kb on + strand, within Psest_1335at 1439.610 kb on - strand, within Psest_1335at 1439.729 kb on - strand, within Psest_1335at 1439.834 kb on - strand, within Psest_1335at 1439.834 kb on - strand, within Psest_1335at 1439.834 kb on - strand, within Psest_1335at 1439.834 kb on - strand, within Psest_1335at 1439.952 kb on - strand, within Psest_1335at 1439.952 kb on - strand, within Psest_1335at 1439.952 kb on - strand, within Psest_1335at 1439.952 kb on - strand, within Psest_1335at 1439.952 kb on - strand, within Psest_1335

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.8 mM
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1,436,342 + +0.3
1,436,342 + +0.4
1,436,342 + -0.2
1,436,342 + +0.1
1,436,342 + +1.5
1,436,343 - +0.4
1,436,343 - -0.0
1,436,343 - +0.1
1,436,411 - +0.3
1,436,987 + -0.9
1,437,076 + -0.1
1,437,109 + +0.5
1,437,110 - +0.8
1,437,220 + -0.7
1,437,221 - -0.1
1,437,265 - -0.6
1,437,434 + +0.9
1,437,435 - +0.4
1,437,581 - Psest_1334 0.18 +0.2
1,437,593 - Psest_1334 0.18 +0.8
1,437,606 - Psest_1334 0.19 +0.3
1,437,606 - Psest_1334 0.19 +3.2
1,437,606 - Psest_1334 0.19 +0.6
1,437,662 + Psest_1334 0.23 +1.0
1,437,662 + Psest_1334 0.23 +0.1
1,437,663 - Psest_1334 0.23 +0.1
1,437,671 - Psest_1334 0.23 -0.5
1,437,921 - Psest_1334 0.38 +0.2
1,437,921 - Psest_1334 0.38 +1.4
1,438,083 - Psest_1334 0.47 +0.7
1,438,087 + Psest_1334 0.48 +1.0
1,438,087 + Psest_1334 0.48 +0.6
1,438,087 + Psest_1334 0.48 +0.2
1,438,088 - Psest_1334 0.48 -0.5
1,438,088 - Psest_1334 0.48 +1.9
1,438,088 - Psest_1334 0.48 -2.2
1,438,088 - Psest_1334 0.48 +1.2
1,438,088 - Psest_1334 0.48 -0.2
1,438,088 - Psest_1334 0.48 -0.1
1,438,088 - Psest_1334 0.48 -0.8
1,438,088 - Psest_1334 0.48 +1.0
1,438,088 - Psest_1334 0.48 -0.7
1,438,088 - Psest_1334 0.48 -1.1
1,438,091 + Psest_1334 0.48 -0.4
1,438,091 + Psest_1334 0.48 -0.7
1,438,091 + Psest_1334 0.48 -1.0
1,438,091 + Psest_1334 0.48 -0.6
1,438,091 + Psest_1334 0.48 -0.4
1,438,091 + Psest_1334 0.48 +0.4
1,438,091 + Psest_1334 0.48 +0.1
1,438,091 + Psest_1334 0.48 +1.5
1,438,092 - Psest_1334 0.48 +0.1
1,438,092 - Psest_1334 0.48 -0.8
1,438,092 - Psest_1334 0.48 -2.2
1,438,092 - Psest_1334 0.48 +0.3
1,438,092 - Psest_1334 0.48 +0.2
1,438,092 - Psest_1334 0.48 -2.0
1,438,092 - Psest_1334 0.48 -0.3
1,438,092 - Psest_1334 0.48 +0.7
1,438,092 - Psest_1334 0.48 +0.5
1,438,092 - Psest_1334 0.48 +0.3
1,438,092 - Psest_1334 0.48 -0.8
1,438,092 - Psest_1334 0.48 +0.4
1,438,703 + Psest_1334 0.84 +0.4
1,438,877 + -0.7
1,438,895 + +0.2
1,438,895 + -0.2
1,438,896 - -0.8
1,438,896 - -0.9
1,438,896 - +0.9
1,438,899 + -0.8
1,438,900 - -2.1
1,438,900 - +1.4
1,438,900 - +1.0
1,438,938 + -0.2
1,438,938 + -0.0
1,438,939 - +0.8
1,438,939 - -0.3
1,438,939 - +2.5
1,439,037 + -0.0
1,439,047 - +0.4
1,439,180 + -0.1
1,439,217 + -0.3
1,439,217 + +0.1
1,439,221 + +0.5
1,439,221 + +1.0
1,439,283 + +0.5
1,439,284 - -0.1
1,439,284 - +0.3
1,439,347 + +0.3
1,439,348 - +0.5
1,439,348 - +0.3
1,439,359 + +0.9
1,439,359 + -0.1
1,439,359 + +0.7
1,439,359 + +0.6
1,439,359 + +0.3
1,439,360 - +1.1
1,439,360 - +0.2
1,439,360 - +0.0
1,439,360 - +1.2
1,439,387 - Psest_1335 0.11 +0.4
1,439,387 - Psest_1335 0.11 +0.7
1,439,518 + Psest_1335 0.19 +0.2
1,439,518 + Psest_1335 0.19 +0.2
1,439,519 - Psest_1335 0.19 -1.6
1,439,519 - Psest_1335 0.19 +0.2
1,439,519 - Psest_1335 0.19 +0.0
1,439,519 - Psest_1335 0.19 +0.5
1,439,519 - Psest_1335 0.19 -0.3
1,439,573 + Psest_1335 0.22 -0.1
1,439,574 - Psest_1335 0.22 -0.0
1,439,574 - Psest_1335 0.22 +0.1
1,439,609 + Psest_1335 0.25 +1.2
1,439,609 + Psest_1335 0.25 +0.0
1,439,609 + Psest_1335 0.25 -2.4
1,439,609 + Psest_1335 0.25 -1.0
1,439,609 + Psest_1335 0.25 +0.9
1,439,609 + Psest_1335 0.25 +1.4
1,439,609 + Psest_1335 0.25 -0.4
1,439,609 + Psest_1335 0.25 +0.5
1,439,609 + Psest_1335 0.25 +0.3
1,439,610 - Psest_1335 0.25 +1.0
1,439,729 - Psest_1335 0.32 -0.5
1,439,834 - Psest_1335 0.38 +0.4
1,439,834 - Psest_1335 0.38 -0.4
1,439,834 - Psest_1335 0.38 +0.3
1,439,834 - Psest_1335 0.38 +1.2
1,439,952 - Psest_1335 0.45 +0.7
1,439,952 - Psest_1335 0.45 -0.7
1,439,952 - Psest_1335 0.45 +0.0
1,439,952 - Psest_1335 0.45 +0.3
1,439,952 - Psest_1335 0.45 +0.1

Or see this region's nucleotide sequence