Strain Fitness in Marinobacter adhaerens HP15 around HP15_1063

Experiment: m.b. Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1062 and HP15_1063 are separated by 165 nucleotidesHP15_1063 and HP15_1064 overlap by 4 nucleotidesHP15_1064 and HP15_1065 are separated by 82 nucleotides HP15_1062: HP15_1062 - rhomboid family protein, at 1,086,556 to 1,087,401 _1062 HP15_1063: HP15_1063 - protein containing DUF1315, at 1,087,567 to 1,087,857 _1063 HP15_1064: HP15_1064 - conserved hypothetical protein, at 1,087,854 to 1,088,693 _1064 HP15_1065: HP15_1065 - aminopeptidase N, at 1,088,776 to 1,091,418 _1065 Position (kb) 1087 1088Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1086.574 kb on - strandat 1086.588 kb on - strandat 1086.610 kb on - strandat 1086.610 kb on - strandat 1086.739 kb on + strand, within HP15_1062at 1086.747 kb on - strand, within HP15_1062at 1086.820 kb on - strand, within HP15_1062at 1086.840 kb on - strand, within HP15_1062at 1086.974 kb on - strand, within HP15_1062at 1087.161 kb on + strand, within HP15_1062at 1087.277 kb on + strand, within HP15_1062at 1087.332 kb on + strandat 1087.446 kb on + strandat 1087.808 kb on - strand, within HP15_1063at 1087.851 kb on + strandat 1087.935 kb on - strandat 1088.184 kb on + strand, within HP15_1064at 1088.473 kb on - strand, within HP15_1064at 1088.511 kb on + strand, within HP15_1064at 1088.516 kb on + strand, within HP15_1064at 1088.534 kb on - strand, within HP15_1064at 1088.549 kb on - strand, within HP15_1064at 1088.554 kb on + strand, within HP15_1064at 1088.600 kb on - strand, within HP15_1064at 1088.607 kb on + strand, within HP15_1064at 1088.731 kb on - strandat 1088.798 kb on + strandat 1088.806 kb on - strandat 1088.835 kb on + strandat 1088.843 kb on + strandat 1088.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM
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1,086,574 - -0.2
1,086,588 - +0.3
1,086,610 - -0.9
1,086,610 - +0.2
1,086,739 + HP15_1062 0.22 -0.2
1,086,747 - HP15_1062 0.23 +0.2
1,086,820 - HP15_1062 0.31 -3.0
1,086,840 - HP15_1062 0.34 +0.2
1,086,974 - HP15_1062 0.49 -0.2
1,087,161 + HP15_1062 0.72 -0.0
1,087,277 + HP15_1062 0.85 -1.0
1,087,332 + +1.8
1,087,446 + +1.4
1,087,808 - HP15_1063 0.83 -1.9
1,087,851 + -0.0
1,087,935 - -2.6
1,088,184 + HP15_1064 0.39 -0.6
1,088,473 - HP15_1064 0.74 -1.9
1,088,511 + HP15_1064 0.78 -0.9
1,088,516 + HP15_1064 0.79 -0.5
1,088,534 - HP15_1064 0.81 +0.1
1,088,549 - HP15_1064 0.83 -0.0
1,088,554 + HP15_1064 0.83 -0.0
1,088,600 - HP15_1064 0.89 -1.1
1,088,607 + HP15_1064 0.90 +0.9
1,088,731 - -0.2
1,088,798 + -0.9
1,088,806 - +0.6
1,088,835 + -0.2
1,088,843 + +0.2
1,088,843 + +0.6

Or see this region's nucleotide sequence