Experiment: m.b. Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1017 and HP15_1018 are separated by 250 nucleotides HP15_1018 and HP15_1019 are separated by 5 nucleotides
HP15_1017: HP15_1017 - acetolactate synthase, large subunit, biosynthetic type, at 1,029,267 to 1,030,967
_1017
HP15_1018: HP15_1018 - efflux transporter, RND family, MFP subunit, at 1,031,218 to 1,032,360
_1018
HP15_1019: HP15_1019 - multidrug resistance protein, at 1,032,366 to 1,035,449
_1019
Position (kb)
1031
1032
1033 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1030.246 kb on - strand, within HP15_1017 at 1030.288 kb on + strand, within HP15_1017 at 1030.300 kb on + strand, within HP15_1017 at 1030.300 kb on + strand, within HP15_1017 at 1030.308 kb on - strand, within HP15_1017 at 1030.317 kb on + strand, within HP15_1017 at 1030.355 kb on + strand, within HP15_1017 at 1030.360 kb on + strand, within HP15_1017 at 1030.368 kb on - strand, within HP15_1017 at 1030.371 kb on - strand, within HP15_1017 at 1030.501 kb on + strand, within HP15_1017 at 1030.509 kb on - strand, within HP15_1017 at 1030.510 kb on + strand, within HP15_1017 at 1030.518 kb on - strand, within HP15_1017 at 1030.518 kb on - strand, within HP15_1017 at 1030.533 kb on - strand, within HP15_1017 at 1030.653 kb on + strand, within HP15_1017 at 1030.658 kb on + strand, within HP15_1017 at 1030.671 kb on - strand, within HP15_1017 at 1030.671 kb on - strand, within HP15_1017 at 1030.678 kb on - strand, within HP15_1017 at 1030.818 kb on + strand at 1030.905 kb on + strand at 1030.905 kb on + strand at 1030.905 kb on + strand at 1030.913 kb on - strand at 1030.913 kb on - strand at 1031.041 kb on + strand at 1031.188 kb on + strand at 1031.218 kb on + strand at 1031.300 kb on + strand at 1031.397 kb on - strand, within HP15_1018 at 1031.397 kb on - strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.420 kb on - strand, within HP15_1018 at 1031.525 kb on + strand, within HP15_1018 at 1031.570 kb on - strand, within HP15_1018 at 1031.842 kb on - strand, within HP15_1018 at 1031.879 kb on + strand, within HP15_1018 at 1032.054 kb on + strand, within HP15_1018 at 1032.062 kb on - strand, within HP15_1018 at 1032.097 kb on - strand, within HP15_1018 at 1032.111 kb on + strand, within HP15_1018 at 1032.119 kb on - strand, within HP15_1018 at 1032.354 kb on + strand at 1032.372 kb on + strand at 1032.594 kb on - strand at 1032.596 kb on + strand at 1032.661 kb on + strand at 1032.671 kb on + strand at 1032.678 kb on + strand, within HP15_1019 at 1032.742 kb on + strand, within HP15_1019 at 1032.797 kb on + strand, within HP15_1019 at 1032.797 kb on + strand, within HP15_1019 at 1032.817 kb on - strand, within HP15_1019 at 1032.966 kb on - strand, within HP15_1019 at 1033.108 kb on - strand, within HP15_1019 at 1033.212 kb on - strand, within HP15_1019 at 1033.242 kb on - strand, within HP15_1019 at 1033.285 kb on - strand, within HP15_1019 at 1033.359 kb on + strand, within HP15_1019 at 1033.359 kb on + strand, within HP15_1019
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 2.5 mM remove 1,030,246 - HP15_1017 0.58 -2.4 1,030,288 + HP15_1017 0.60 +3.8 1,030,300 + HP15_1017 0.61 +0.4 1,030,300 + HP15_1017 0.61 -0.9 1,030,308 - HP15_1017 0.61 -1.1 1,030,317 + HP15_1017 0.62 +0.7 1,030,355 + HP15_1017 0.64 -0.5 1,030,360 + HP15_1017 0.64 -0.9 1,030,368 - HP15_1017 0.65 -0.8 1,030,371 - HP15_1017 0.65 +0.4 1,030,501 + HP15_1017 0.73 +0.8 1,030,509 - HP15_1017 0.73 -0.7 1,030,510 + HP15_1017 0.73 +0.3 1,030,518 - HP15_1017 0.74 +1.3 1,030,518 - HP15_1017 0.74 -0.4 1,030,533 - HP15_1017 0.74 +0.8 1,030,653 + HP15_1017 0.81 +0.1 1,030,658 + HP15_1017 0.82 -0.9 1,030,671 - HP15_1017 0.83 -0.8 1,030,671 - HP15_1017 0.83 -1.9 1,030,678 - HP15_1017 0.83 +0.9 1,030,818 + -0.1 1,030,905 + -0.8 1,030,905 + -0.8 1,030,905 + -2.3 1,030,913 - +0.1 1,030,913 - +0.2 1,031,041 + +1.1 1,031,188 + +0.3 1,031,218 + -1.4 1,031,300 + +1.3 1,031,397 - HP15_1018 0.16 +0.4 1,031,397 - HP15_1018 0.16 -1.3 1,031,412 + HP15_1018 0.17 +2.8 1,031,412 + HP15_1018 0.17 -0.0 1,031,412 + HP15_1018 0.17 -1.8 1,031,412 + HP15_1018 0.17 -1.3 1,031,420 - HP15_1018 0.18 -1.0 1,031,525 + HP15_1018 0.27 +0.5 1,031,570 - HP15_1018 0.31 +0.9 1,031,842 - HP15_1018 0.55 -0.7 1,031,879 + HP15_1018 0.58 -0.8 1,032,054 + HP15_1018 0.73 -0.3 1,032,062 - HP15_1018 0.74 +0.8 1,032,097 - HP15_1018 0.77 -1.3 1,032,111 + HP15_1018 0.78 +0.8 1,032,119 - HP15_1018 0.79 +2.8 1,032,354 + +0.7 1,032,372 + -0.2 1,032,594 - +1.2 1,032,596 + +0.1 1,032,661 + -0.6 1,032,671 + +0.8 1,032,678 + HP15_1019 0.10 -0.8 1,032,742 + HP15_1019 0.12 -0.5 1,032,797 + HP15_1019 0.14 -0.2 1,032,797 + HP15_1019 0.14 +0.2 1,032,817 - HP15_1019 0.15 +1.8 1,032,966 - HP15_1019 0.19 -0.4 1,033,108 - HP15_1019 0.24 +2.8 1,033,212 - HP15_1019 0.27 +1.1 1,033,242 - HP15_1019 0.28 -0.8 1,033,285 - HP15_1019 0.30 +1.2 1,033,359 + HP15_1019 0.32 -0.4 1,033,359 + HP15_1019 0.32 -0.2
Or see this region's nucleotide sequence