Strain Fitness in Shewanella amazonensis SB2B around Sama_R0127

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
3,979,884	+		Sama_3352	0.47	-0.2
3,979,884	+		Sama_3352	0.47	-0.1
3,979,885	-		Sama_3352	0.47	-0.0
3,979,885	-		Sama_3352	0.47	-0.3
3,979,885	-		Sama_3352	0.47	+0.0
3,979,885	-		Sama_3352	0.47	-0.7
3,979,889	+		Sama_3352	0.48	-0.4
3,979,889	+		Sama_3352	0.48	+1.0
3,979,889	+		Sama_3352	0.48	-0.0
3,979,889	+		Sama_3352	0.48	+0.7
3,979,889	+		Sama_3352	0.48	+2.0
3,979,889	+		Sama_3352	0.48	+0.2
3,979,889	+		Sama_3352	0.48	-0.2
3,979,889	+		Sama_3352	0.48	+0.8
3,979,889	+		Sama_3352	0.48	+0.5
3,979,889	+		Sama_3352	0.48	-2.3
3,979,890	-		Sama_3352	0.48	-0.3
3,979,890	-		Sama_3352	0.48	+1.2
3,979,890	-		Sama_3352	0.48	+0.5
3,979,890	-		Sama_3352	0.48	-0.1
3,979,899	+		Sama_3352	0.48	+0.2
3,979,899	+		Sama_3352	0.48	-2.7
3,979,899	+		Sama_3352	0.48	+1.1
3,979,900	-		Sama_3352	0.48	-0.7
3,979,946	-		Sama_3352	0.51	-0.0
3,979,964	+		Sama_3352	0.52	-0.8
3,979,965	-		Sama_3352	0.52	-0.8
3,979,965	-		Sama_3352	0.52	+0.5
3,979,965	-		Sama_3352	0.52	-0.9
3,979,965	-		Sama_3352	0.52	+1.1
3,980,032	-		Sama_3352	0.56	+0.2
3,980,041	+		Sama_3352	0.57	-0.0
3,980,041	+		Sama_3352	0.57	+0.4
3,980,041	+		Sama_3352	0.57	-1.3
3,980,041	+		Sama_3352	0.57	-2.8
3,980,041	+		Sama_3352	0.57	+0.2
3,980,042	-		Sama_3352	0.57	-1.1
3,980,042	-		Sama_3352	0.57	-1.4
3,980,052	+		Sama_3352	0.58	+0.1
3,980,052	+		Sama_3352	0.58	+1.1
3,980,052	+		Sama_3352	0.58	-0.9
3,980,053	-		Sama_3352	0.58	+0.4
3,980,053	-		Sama_3352	0.58	+0.6
3,980,053	-		Sama_3352	0.58	-1.0
3,980,053	-		Sama_3352	0.58	+0.2
3,980,053	-		Sama_3352	0.58	+1.2
3,980,054	+		Sama_3352	0.58	+0.4
3,980,054	+		Sama_3352	0.58	-0.2
3,980,055	-		Sama_3352	0.58	+1.2
3,980,055	-		Sama_3352	0.58	+2.6
3,980,055	-		Sama_3352	0.58	+0.7
3,980,055	-		Sama_3352	0.58	-0.3
3,980,078	-		Sama_3352	0.59	+0.4
3,980,078	-		Sama_3352	0.59	-0.2
3,980,100	+		Sama_3352	0.61	+2.2
3,980,100	+		Sama_3352	0.61	-1.4
3,980,100	+		Sama_3352	0.61	+0.9
3,980,100	+		Sama_3352	0.61	-0.2
3,980,101	-		Sama_3352	0.61	-1.1
3,980,101	-		Sama_3352	0.61	+0.2
3,980,115	-		Sama_3352	0.61	+0.7
3,980,115	-		Sama_3352	0.61	+0.4
3,980,115	-		Sama_3352	0.61	-1.5
3,980,115	-		Sama_3352	0.61	-0.4
3,980,115	-		Sama_3352	0.61	-1.0
3,980,133	+		Sama_3352	0.63	-0.1
3,980,133	+		Sama_3352	0.63	+0.2
3,980,134	-		Sama_3352	0.63	+0.2
3,980,134	-		Sama_3352	0.63	-0.0
3,980,134	-		Sama_3352	0.63	-1.3
3,980,134	-		Sama_3352	0.63	+0.1
3,980,134	-		Sama_3352	0.63	+0.0
3,980,134	-		Sama_3352	0.63	-2.2
3,980,176	+		Sama_3352	0.65	-1.3
3,980,177	-		Sama_3352	0.65	-1.1
3,980,236	+		Sama_3352	0.69	+1.8
3,980,236	+		Sama_3352	0.69	+2.1
3,980,236	+		Sama_3352	0.69	-0.8
3,980,237	-		Sama_3352	0.69	+0.6
3,980,237	-		Sama_3352	0.69	-0.7
3,980,237	-		Sama_3352	0.69	-1.4
3,980,237	-		Sama_3352	0.69	+0.6
3,980,237	-		Sama_3352	0.69	-0.1
3,980,237	-		Sama_3352	0.69	-0.5
3,980,237	-		Sama_3352	0.69	+1.7
3,980,243	-		Sama_3352	0.69	+0.3
3,980,266	+		Sama_3352	0.71	-0.2
3,980,266	+		Sama_3352	0.71	+1.3
3,980,266	+		Sama_3352	0.71	+0.5
3,980,266	+		Sama_3352	0.71	+2.0
3,980,266	+		Sama_3352	0.71	+0.4
3,980,266	+		Sama_3352	0.71	-0.3
3,980,267	-		Sama_3352	0.71	-0.3
3,980,267	-		Sama_3352	0.71	+0.0
3,980,267	-		Sama_3352	0.71	+1.6
3,980,270	+		Sama_3352	0.71	-0.3
3,980,270	+		Sama_3352	0.71	-1.3
3,980,270	+		Sama_3352	0.71	-3.1
3,980,271	-		Sama_3352	0.71	+0.1
3,980,271	-		Sama_3352	0.71	-0.3
3,980,271	-		Sama_3352	0.71	-0.5
3,980,289	+		Sama_3352	0.72	-1.0
3,980,289	+		Sama_3352	0.72	+1.7
3,980,289	+		Sama_3352	0.72	-1.3
3,980,290	-		Sama_3352	0.72	+2.3
3,980,290	-		Sama_3352	0.72	-1.0
3,980,290	-		Sama_3352	0.72	-1.0
3,980,290	-		Sama_3352	0.72	-0.7
3,980,313	+		Sama_3352	0.73	+0.2
3,980,314	-		Sama_3352	0.74	+0.6
3,980,314	-		Sama_3352	0.74	+0.8
3,980,319	+		Sama_3352	0.74	+0.4
3,980,320	-		Sama_3352	0.74	-2.3
3,980,320	-		Sama_3352	0.74	-0.3
3,980,320	-		Sama_3352	0.74	-0.5
3,980,327	+		Sama_3352	0.74	+0.7
3,980,328	-		Sama_3352	0.74	+2.4
3,980,328	-		Sama_3352	0.74	-1.0
3,980,328	-		Sama_3352	0.74	-0.6
3,980,347	-		Sama_3352	0.76	-0.6
3,980,347	-		Sama_3352	0.76	-0.6
3,980,347	-		Sama_3352	0.76	-0.3
3,980,382	+		Sama_3352	0.78	-0.1
3,980,382	+		Sama_3352	0.78	+0.8
3,980,382	+		Sama_3352	0.78	+0.4
3,980,383	-		Sama_3352	0.78	+0.2
3,980,383	-		Sama_3352	0.78	-0.0
3,980,383	-		Sama_3352	0.78	+0.9
3,980,383	-		Sama_3352	0.78	-2.7
3,980,383	-		Sama_3352	0.78	+0.6
3,980,442	+		Sama_3352	0.81	-0.3
3,980,442	+		Sama_3352	0.81	-1.6
3,980,442	+		Sama_3352	0.81	+0.0
3,980,443	-		Sama_3352	0.81	-0.7
3,980,467	+		Sama_3352	0.83	-0.3
3,980,467	+		Sama_3352	0.83	-0.0
3,980,467	+		Sama_3352	0.83	-0.9
3,980,468	-		Sama_3352	0.83	+0.3
3,980,470	+		Sama_3352	0.83	+0.7
3,980,470	+		Sama_3352	0.83	+0.3
3,980,471	-		Sama_3352	0.83	-0.1
3,980,471	-		Sama_3352	0.83	-0.6
3,980,471	-		Sama_3352	0.83	+0.5
3,980,471	-		Sama_3352	0.83	+1.4
3,980,490	+		Sama_3352	0.84	+1.1
3,980,490	+		Sama_3352	0.84	-2.1
3,980,491	-		Sama_3352	0.84	-0.0
3,980,499	-		Sama_3352	0.85	+1.0
3,980,499	-		Sama_3352	0.85	+1.0
3,980,508	+		Sama_3352	0.85	-1.0
3,980,508	+		Sama_3352	0.85	+0.4
3,980,508	+		Sama_3352	0.85	+0.7
3,980,509	-		Sama_3352	0.85	+0.8
3,980,548	+		Sama_3352	0.88	-1.6
3,980,548	+		Sama_3352	0.88	-1.6
3,980,548	+		Sama_3352	0.88	+0.6
3,980,549	-		Sama_3352	0.88	-0.3
3,980,549	-		Sama_3352	0.88	+0.9
3,980,549	-		Sama_3352	0.88	-0.4
3,980,602	+				+0.7
3,980,602	+				-0.6
3,980,603	-				+0.6
3,980,609	+				+1.9
3,980,609	+				-2.4
3,980,610	-				+4.0
3,980,610	-				-1.1
3,980,610	-				+0.8
3,980,615	+				+0.7
3,980,616	-				-0.9
3,980,616	-				-0.0
3,980,616	-				-0.6
3,980,631	+				-1.0
3,980,631	+				+0.5
3,980,631	+				-1.1
3,980,632	-				+0.9
3,980,650	-				+0.5
3,980,745	+				-0.7
3,980,746	-				-0.5
3,980,790	+				+0.6
3,980,790	+				-0.3
3,980,790	+				+0.6
3,980,793	+				-2.0
3,980,794	-				-0.7
3,980,795	+				-1.1
3,980,839	+				-0.7
3,980,840	-				+0.2
3,981,267	+				-0.0
3,981,267	+				+1.2
3,981,268	-				+0.5
3,981,268	-				+0.1
3,981,268	-				-0.2
3,981,292	+				+1.2
3,981,292	+				+3.4
3,981,292	+				+2.3
3,981,293	-				+0.8
3,981,293	-				-1.0
3,981,293	-				-0.1
3,981,294	+				+1.6
3,981,295	-				+1.8
3,981,295	-				+1.5
3,981,295	-				-0.6
3,981,295	-				+2.8
3,981,372	-		Sama_3353	0.13	+1.3
3,981,482	+		Sama_3353	0.26	+1.1
3,981,483	-		Sama_3353	0.26	+3.2
3,981,509	-		Sama_3353	0.29	+0.6
3,981,587	+		Sama_3353	0.38	+0.3
3,981,587	+		Sama_3353	0.38	+1.0
3,981,587	+		Sama_3353	0.38	+0.8
3,981,588	-		Sama_3353	0.38	+0.2
3,981,588	-		Sama_3353	0.38	+1.2
3,981,588	-		Sama_3353	0.38	+1.3
3,981,610	+		Sama_3353	0.41	+1.4
3,981,610	+		Sama_3353	0.41	+0.9
3,981,610	+		Sama_3353	0.41	+1.5
3,981,610	+		Sama_3353	0.41	+1.1
3,981,611	-		Sama_3353	0.41	+0.8
3,981,611	-		Sama_3353	0.41	+1.3
3,981,611	-		Sama_3353	0.41	+2.0
3,981,839	+		Sama_3353	0.68	+0.9
3,981,839	+		Sama_3353	0.68	+0.9
3,981,839	+		Sama_3353	0.68	+0.9
3,981,839	+		Sama_3353	0.68	+1.4
3,981,901	+		Sama_3353	0.75	+1.0
3,981,950	-		Sama_3353	0.81	+1.0
3,981,962	-		Sama_3353	0.82	-0.4
3,982,071	-				+0.2
3,982,088	-				+1.0
3,982,088	-				-0.9
3,982,088	-				+1.1
3,982,089	+				+1.6
3,982,089	+				+1.3
3,982,089	+				+2.0
3,982,089	+				+1.8
3,982,089	+				+1.0
3,982,090	-				+0.1
3,982,090	-				+1.1
3,982,090	-				-1.8
3,982,090	-				-0.5
3,982,111	+				+1.5
3,982,111	+				-0.3
3,982,111	+				+0.1
3,982,111	+				+1.2
3,982,111	+				+3.1
3,982,111	+				+0.6
3,982,111	+				+0.9
3,982,111	+				+3.0
3,982,111	+				-0.8
3,982,111	+				+1.6
3,982,111	+				+1.5
3,982,111	+				+1.1
3,982,112	-				+0.6
3,982,112	-				+1.2
3,982,112	-				+0.8
3,982,112	-				+1.5
3,982,112	-				+1.2
3,982,112	-				+2.1
3,982,112	-				+1.8
3,982,112	-				-0.1
3,982,112	-				+1.5
3,982,112	-				-1.9
3,982,112	-				+0.9
3,982,115	+				+1.5
3,982,115	+				+0.7
3,982,115	+				+1.8
3,982,115	+				-0.3
3,982,116	-				+0.9
3,982,116	-				+2.9
3,982,116	-				+0.8
3,982,126	+				+1.6