Strain Fitness in Shewanella amazonensis SB2B around Sama_2931

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
3,483,636	+		Sama_2929	0.75	-0.0
3,483,636	+		Sama_2929	0.75	+0.4
3,483,636	+		Sama_2929	0.75	+0.1
3,483,636	+		Sama_2929	0.75	+2.1
3,483,636	+		Sama_2929	0.75	-0.6
3,483,636	+		Sama_2929	0.75	+1.1
3,483,636	+		Sama_2929	0.75	+0.4
3,483,636	+		Sama_2929	0.75	-1.4
3,483,636	+		Sama_2929	0.75	-0.7
3,483,637	-		Sama_2929	0.75	-1.3
3,483,637	-		Sama_2929	0.75	-0.8
3,483,637	-		Sama_2929	0.75	+0.8
3,483,637	-		Sama_2929	0.75	-0.2
3,483,637	-		Sama_2929	0.75	-1.8
3,483,637	-		Sama_2929	0.75	-0.8
3,483,637	-		Sama_2929	0.75	-1.2
3,483,637	-		Sama_2929	0.75	+0.0
3,483,637	-		Sama_2929	0.75	-0.4
3,483,637	-		Sama_2929	0.75	-1.2
3,483,637	-		Sama_2929	0.75	-0.3
3,483,637	-		Sama_2929	0.75	+0.2
3,483,637	-		Sama_2929	0.75	-2.0
3,483,637	-		Sama_2929	0.75	-0.8
3,483,637	-		Sama_2929	0.75	-1.3
3,483,637	-		Sama_2929	0.75	+1.3
3,483,637	-		Sama_2929	0.75	-0.1
3,483,637	-		Sama_2929	0.75	+0.8
3,483,637	-		Sama_2929	0.75	+0.6
3,483,637	-		Sama_2929	0.75	-0.9
3,483,637	-		Sama_2929	0.75	-0.6
3,483,637	-		Sama_2929	0.75	+0.5
3,483,640	+		Sama_2929	0.76	+0.4
3,483,641	-		Sama_2929	0.76	-0.5
3,483,641	-		Sama_2929	0.76	-2.4
3,483,649	+		Sama_2929	0.77	-1.1
3,483,649	+		Sama_2929	0.77	-0.4
3,483,650	-		Sama_2929	0.77	-0.7
3,483,819	-				-1.9
3,483,826	+				+0.6
3,483,826	+				-0.9
3,483,826	+				+0.4
3,483,826	+				-1.4
3,483,826	+				-2.4
3,483,826	+				-1.0
3,483,826	+				-2.3
3,483,826	+				-0.2
3,483,826	+				+1.7
3,483,827	-				-1.1
3,483,827	-				-0.5
3,483,827	-				-0.8
3,483,827	-				+1.4
3,483,827	-				+0.2
3,483,827	-				+0.6
3,483,827	-				-2.6
3,483,827	-				+1.4
3,483,827	-				+0.3
3,483,827	-				-0.3
3,483,841	+				-0.3
3,483,907	+				+1.1
3,483,908	-				-0.7
3,483,908	-				-2.0
3,483,908	-				-1.4
3,483,908	-				+0.2
3,483,910	+				-1.5
3,483,910	+				+1.3
3,483,910	+				-0.2
3,483,979	+		Sama_2930	0.16	+0.3
3,484,071	-		Sama_2930	0.29	-0.2
3,484,071	-		Sama_2930	0.29	+1.8
3,484,116	-		Sama_2930	0.35	-0.8
3,484,123	+		Sama_2930	0.36	-1.8
3,484,123	+		Sama_2930	0.36	+0.4
3,484,123	+		Sama_2930	0.36	+1.2
3,484,124	-		Sama_2930	0.36	+0.8
3,484,124	-		Sama_2930	0.36	+1.0
3,484,222	+		Sama_2930	0.49	-0.4
3,484,222	+		Sama_2930	0.49	+0.8
3,484,223	-		Sama_2930	0.49	-0.7
3,484,223	-		Sama_2930	0.49	-2.4
3,484,246	+		Sama_2930	0.52	-0.3
3,484,246	+		Sama_2930	0.52	-0.8
3,484,246	+		Sama_2930	0.52	-1.3
3,484,246	+		Sama_2930	0.52	-1.4
3,484,246	+		Sama_2930	0.52	+0.6
3,484,247	-		Sama_2930	0.52	+4.2
3,484,247	-		Sama_2930	0.52	+0.1
3,484,275	-		Sama_2930	0.56	-1.9
3,484,283	-		Sama_2930	0.57	-1.2
3,484,285	+		Sama_2930	0.58	+0.7
3,484,285	+		Sama_2930	0.58	-0.3
3,484,409	-		Sama_2930	0.74	+0.4
3,484,409	-		Sama_2930	0.74	+0.1
3,484,409	-		Sama_2930	0.74	+0.6
3,484,436	-		Sama_2930	0.78	+0.1
3,484,436	-		Sama_2930	0.78	+0.9
3,484,436	-		Sama_2930	0.78	+0.4
3,484,547	+				+0.4
3,484,547	+				-0.2
3,484,555	+				+2.0
3,484,556	-				+1.4
3,484,568	+				-1.6
3,484,569	-				+0.7
3,484,590	+				-0.1
3,484,590	+				+0.1
3,484,590	+				-0.6
3,484,590	+				+1.2
3,484,591	-				-0.2
3,484,591	-				-0.6
3,484,600	+				+0.4
3,484,600	+				-1.7
3,484,600	+				-1.6
3,484,601	-				+0.0
3,484,601	-				+0.4
3,484,601	-				+0.2
3,484,601	-				+2.2
3,484,601	-				+1.1
3,484,601	-				+0.1
3,484,601	-				-1.2
3,484,601	-				-0.5
3,484,601	-				+1.0
3,484,627	+				+1.1
3,484,628	-				-0.3
3,484,628	-				+1.6
3,484,721	+		Sama_2931	0.34	-0.5
3,484,750	+		Sama_2931	0.42	+0.6
3,484,750	+		Sama_2931	0.42	-0.0
3,484,762	+		Sama_2931	0.45	+0.1
3,484,811	+		Sama_2931	0.58	-0.6
3,484,857	+		Sama_2931	0.71	-0.0
3,484,858	-		Sama_2931	0.71	+1.0
3,484,858	-		Sama_2931	0.71	-0.6
3,484,862	+		Sama_2931	0.72	+1.5
3,484,862	+		Sama_2931	0.72	+1.1
3,484,863	-		Sama_2931	0.73	-0.9
3,484,863	-		Sama_2931	0.73	-0.8
3,484,910	+		Sama_2931	0.86	+1.4
3,484,910	+		Sama_2931	0.86	+0.8
3,484,911	-		Sama_2931	0.86	+1.9
3,484,911	-		Sama_2931	0.86	-0.9
3,484,961	+				-0.5
3,484,961	+				+0.9
3,484,961	+				+0.1
3,484,961	+				-0.0
3,484,961	+				-0.6
3,484,961	+				+1.0
3,484,961	+				+0.3
3,484,961	+				+1.2
3,484,961	+				+1.5
3,484,961	+				+0.5
3,484,961	+				-0.3
3,484,961	+				+1.4
3,484,962	-				+0.4
3,484,962	-				+0.8
3,484,962	-				+1.4
3,484,962	-				-2.4
3,484,962	-				-0.1
3,484,962	-				+0.9
3,485,061	+				+0.7
3,485,064	-				+0.7
3,485,064	-				+2.9
3,485,065	+				-0.5
3,485,066	-				+0.8
3,485,120	-				+0.9
3,485,160	+				-0.4
3,485,160	+				-0.1
3,485,160	+				-0.8
3,485,161	-				-3.0
3,485,161	-				-0.8
3,485,161	-				-2.3
3,485,161	-				-1.8
3,485,161	-				-0.2
3,485,458	+		Sama_2932	0.39	-2.9
3,485,458	+		Sama_2932	0.39	-2.0
3,485,458	+		Sama_2932	0.39	+0.4
3,485,458	+		Sama_2932	0.39	-3.7
3,485,458	+		Sama_2932	0.39	-0.7
3,485,459	-		Sama_2932	0.39	-3.2
3,485,459	-		Sama_2932	0.39	-2.8
3,485,459	-		Sama_2932	0.39	-4.4
3,485,459	-		Sama_2932	0.39	-1.9
3,485,557	+		Sama_2932	0.54	-4.5
3,485,557	+		Sama_2932	0.54	-2.0
3,485,557	+		Sama_2932	0.54	-1.9
3,485,557	+		Sama_2932	0.54	-2.5
3,485,557	+		Sama_2932	0.54	-1.8
3,485,557	+		Sama_2932	0.54	-2.2
3,485,558	-		Sama_2932	0.54	-1.6
3,485,581	+		Sama_2932	0.58	-0.6
3,485,581	+		Sama_2932	0.58	-0.9
3,485,581	+		Sama_2932	0.58	-3.0
3,485,582	-		Sama_2932	0.58	-2.3
3,485,582	-		Sama_2932	0.58	-4.4
3,485,582	-		Sama_2932	0.58	-3.0
3,485,582	-		Sama_2932	0.58	-2.6
3,485,582	-		Sama_2932	0.58	-1.2
3,485,592	-		Sama_2932	0.59	-2.0
3,485,592	-		Sama_2932	0.59	-2.3
3,485,592	-		Sama_2932	0.59	-0.5
3,485,592	-		Sama_2932	0.59	+1.3
3,485,633	+		Sama_2932	0.66	-4.2
3,485,633	+		Sama_2932	0.66	-2.2
3,485,633	+		Sama_2932	0.66	-3.0
3,485,633	+		Sama_2932	0.66	-2.2
3,485,634	-		Sama_2932	0.66	-0.5
3,485,634	-		Sama_2932	0.66	-3.2
3,485,634	-		Sama_2932	0.66	-2.2
3,485,634	-		Sama_2932	0.66	-0.0
3,485,888	+				+1.1
3,485,923	-				+1.6
3,485,923	-				+1.1
3,485,923	-				-0.4
3,485,926	+				-1.1
3,485,960	+				+0.7
3,485,960	+				-0.8