Strain Fitness in Shewanella amazonensis SB2B around Sama_2610

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
3,125,805	+		Sama_2609	0.65	+0.2
3,125,806	-		Sama_2609	0.65	-0.7
3,125,806	-		Sama_2609	0.65	-1.5
3,125,806	-		Sama_2609	0.65	-0.3
3,125,809	-		Sama_2609	0.65	+0.5
3,125,835	-		Sama_2609	0.66	-0.8
3,125,835	-		Sama_2609	0.66	-1.1
3,125,932	-		Sama_2609	0.71	-0.3
3,125,940	-		Sama_2609	0.72	-0.5
3,125,989	+		Sama_2609	0.74	-1.1
3,125,989	+		Sama_2609	0.74	+1.1
3,125,989	+		Sama_2609	0.74	-0.8
3,125,989	+		Sama_2609	0.74	-2.1
3,125,990	-		Sama_2609	0.74	-0.1
3,125,990	-		Sama_2609	0.74	+0.6
3,125,999	-		Sama_2609	0.75	-0.1
3,126,016	-		Sama_2609	0.76	+0.7
3,126,016	-		Sama_2609	0.76	-0.2
3,126,016	-		Sama_2609	0.76	+0.2
3,126,016	-		Sama_2609	0.76	-0.9
3,126,032	-		Sama_2609	0.77	+0.7
3,126,071	+		Sama_2609	0.79	-1.4
3,126,071	+		Sama_2609	0.79	-0.9
3,126,072	-		Sama_2609	0.79	-1.1
3,126,072	-		Sama_2609	0.79	-0.8
3,126,072	-		Sama_2609	0.79	+0.1
3,126,072	-		Sama_2609	0.79	+0.7
3,126,072	-		Sama_2609	0.79	+0.0
3,126,110	-		Sama_2609	0.81	-0.7
3,126,140	+		Sama_2609	0.83	+2.1
3,126,141	-		Sama_2609	0.83	+0.3
3,126,202	+		Sama_2609	0.86	+0.2
3,126,267	-		Sama_2609	0.89	+0.7
3,126,267	-		Sama_2609	0.89	-0.2
3,126,267	-		Sama_2609	0.89	-1.0
3,126,267	-		Sama_2609	0.89	-0.1
3,126,267	-		Sama_2609	0.89	-0.2
3,126,274	-		Sama_2609	0.90	+0.7
3,126,274	-		Sama_2609	0.90	-0.3
3,126,286	+				-1.0
3,126,387	-				-0.0
3,126,387	-				+0.1
3,126,421	+				-0.3
3,126,421	+				-0.2
3,126,468	+				-1.2
3,126,469	-				+0.7
3,126,469	-				+0.2
3,126,469	-				+0.6
3,126,469	-				+1.2
3,126,469	-				-0.3
3,126,482	-				+0.1
3,126,482	-				-1.9
3,126,482	-				-0.3
3,126,482	-				+0.6
3,126,495	-				-0.3
3,126,495	-				+0.7
3,126,495	-				+0.9
3,126,500	+				-1.6
3,126,500	+				-0.3
3,126,500	+				+0.6
3,126,516	+				+0.6
3,126,516	+				-0.1
3,126,516	+				-0.7
3,126,516	+				+0.3
3,126,517	-				+0.2
3,126,517	-				+0.8
3,126,517	-				-0.8
3,126,527	+				+1.1
3,126,527	+				-0.6
3,126,527	+				-0.2
3,126,527	+				+1.0
3,126,528	-				-1.1
3,126,528	-				+0.2
3,126,528	-				+0.7
3,126,528	-				-1.2
3,126,528	-				+0.8
3,126,583	-				+0.3
3,126,583	-				-1.1
3,126,583	-				-0.6
3,126,594	+				-0.3
3,126,654	+				-0.0
3,126,679	+				+0.8
3,126,679	+				+1.2
3,126,680	-				-0.9
3,126,680	-				-0.5
3,126,698	-				+0.4
3,126,701	+				+0.2
3,126,701	+				-0.1
3,126,701	+				-2.3
3,126,702	-				-0.6
3,126,702	-				+0.7
3,126,702	-				+2.3
3,126,706	+				+0.9
3,126,725	-				-0.3
3,126,725	-				+4.9
3,126,737	-				+0.2
3,126,827	-				+0.3
3,126,827	-				+0.0
3,126,827	-				-1.2
3,126,827	-				-0.1
3,126,827	-				+2.1
3,126,827	-				+0.5
3,126,848	+		Sama_2610	0.12	+1.8
3,126,848	+		Sama_2610	0.12	-0.1
3,126,849	-		Sama_2610	0.12	+0.4
3,126,849	-		Sama_2610	0.12	-0.9
3,126,924	+		Sama_2610	0.20	-0.0
3,126,935	-		Sama_2610	0.21	-0.8
3,126,935	-		Sama_2610	0.21	-0.5
3,126,938	+		Sama_2610	0.21	-0.2
3,126,938	+		Sama_2610	0.21	+1.1
3,126,938	+		Sama_2610	0.21	-0.5
3,126,938	+		Sama_2610	0.21	-0.1
3,126,938	+		Sama_2610	0.21	-0.7
3,126,938	+		Sama_2610	0.21	-0.3
3,126,938	+		Sama_2610	0.21	+0.6
3,126,938	+		Sama_2610	0.21	+1.2
3,126,938	+		Sama_2610	0.21	+0.2
3,126,938	+		Sama_2610	0.21	-2.1
3,126,938	+		Sama_2610	0.21	-1.2
3,126,938	+		Sama_2610	0.21	-0.4
3,126,938	+		Sama_2610	0.21	+0.3
3,126,938	+		Sama_2610	0.21	-1.3
3,126,939	-		Sama_2610	0.21	+0.5
3,126,939	-		Sama_2610	0.21	+0.5
3,126,939	-		Sama_2610	0.21	-0.8
3,126,939	-		Sama_2610	0.21	+0.1
3,126,939	-		Sama_2610	0.21	-0.4
3,126,939	-		Sama_2610	0.21	+1.2
3,126,939	-		Sama_2610	0.21	+1.6
3,126,939	-		Sama_2610	0.21	-1.8
3,126,942	+		Sama_2610	0.21	-1.3
3,126,942	+		Sama_2610	0.21	+2.2
3,126,942	+		Sama_2610	0.21	+0.0
3,126,942	+		Sama_2610	0.21	-1.3
3,126,943	-		Sama_2610	0.22	-1.0
3,126,943	-		Sama_2610	0.22	+1.6
3,126,983	+		Sama_2610	0.26	+1.1
3,126,983	+		Sama_2610	0.26	+1.5
3,126,993	+		Sama_2610	0.27	+0.9
3,126,993	+		Sama_2610	0.27	-0.9
3,126,993	+		Sama_2610	0.27	+0.2
3,126,993	+		Sama_2610	0.27	-0.3
3,126,994	-		Sama_2610	0.27	-0.5
3,126,994	-		Sama_2610	0.27	+1.4
3,127,035	+		Sama_2610	0.31	-0.6
3,127,055	+		Sama_2610	0.33	+1.2
3,127,055	+		Sama_2610	0.33	+3.7
3,127,056	-		Sama_2610	0.33	+0.6
3,127,056	-		Sama_2610	0.33	+1.6
3,127,056	-		Sama_2610	0.33	-0.3
3,127,056	-		Sama_2610	0.33	-0.3
3,127,056	-		Sama_2610	0.33	-1.4
3,127,056	-		Sama_2610	0.33	-0.3
3,127,125	+		Sama_2610	0.41	+0.0
3,127,126	-		Sama_2610	0.41	-1.7
3,127,126	-		Sama_2610	0.41	+0.6
3,127,154	+		Sama_2610	0.44	-1.4
3,127,154	+		Sama_2610	0.44	-1.6
3,127,154	+		Sama_2610	0.44	+1.5
3,127,154	+		Sama_2610	0.44	+1.0
3,127,154	+		Sama_2610	0.44	+0.4
3,127,154	+		Sama_2610	0.44	+0.2
3,127,154	+		Sama_2610	0.44	-0.5
3,127,155	-		Sama_2610	0.44	-1.8
3,127,155	-		Sama_2610	0.44	+0.3
3,127,155	-		Sama_2610	0.44	+3.7
3,127,155	-		Sama_2610	0.44	+0.5
3,127,155	-		Sama_2610	0.44	+1.7
3,127,155	-		Sama_2610	0.44	-0.3
3,127,155	-		Sama_2610	0.44	-0.3
3,127,216	+		Sama_2610	0.50	+0.5
3,127,217	-		Sama_2610	0.50	+0.4
3,127,217	-		Sama_2610	0.50	+1.0
3,127,285	+		Sama_2610	0.57	-0.4
3,127,285	+		Sama_2610	0.57	-1.8
3,127,285	+		Sama_2610	0.57	+0.1
3,127,285	+		Sama_2610	0.57	-1.2
3,127,286	-		Sama_2610	0.58	+0.8
3,127,286	-		Sama_2610	0.58	+0.8
3,127,460	+		Sama_2610	0.76	-3.0
3,127,460	+		Sama_2610	0.76	-0.9
3,127,460	+		Sama_2610	0.76	-1.0
3,127,460	+		Sama_2610	0.76	-0.2
3,127,460	+		Sama_2610	0.76	+1.6
3,127,461	-		Sama_2610	0.76	+0.6
3,127,461	-		Sama_2610	0.76	+2.6
3,127,461	-		Sama_2610	0.76	+0.2
3,127,464	+		Sama_2610	0.76	+0.4
3,127,464	+		Sama_2610	0.76	+0.1
3,127,503	+		Sama_2610	0.80	+0.3
3,127,503	+		Sama_2610	0.80	-2.6
3,127,503	+		Sama_2610	0.80	-0.2
3,127,504	-		Sama_2610	0.80	+1.7
3,127,504	-		Sama_2610	0.80	+0.9
3,127,593	+		Sama_2610	0.90	-2.6
3,127,593	+		Sama_2610	0.90	+0.6
3,127,593	+		Sama_2610	0.90	+0.7
3,127,593	+		Sama_2610	0.90	+1.1
3,127,594	-		Sama_2610	0.90	-0.5
3,127,594	-		Sama_2610	0.90	+0.4
3,127,606	+				+2.0
3,127,606	+				-0.6
3,127,606	+				+0.3
3,127,606	+				+1.3
3,127,606	+				-0.5
3,127,606	+				-0.7
3,127,607	-				+0.9
3,127,607	-				+1.6
3,127,609	+				-2.7
3,127,609	+				+0.9
3,127,609	+				+1.8
3,127,610	-				-0.5
3,127,610	-				-2.0
3,127,689	-				+2.8
3,127,693	+				-0.0
3,127,693	+				+0.6
3,127,694	-				-0.8
3,127,725	+				-0.5
3,127,726	-				-2.7
3,127,735	+				-0.8
3,127,735	+				-0.8
3,127,735	+				+0.3
3,127,736	-				+2.4
3,127,736	-				-0.1
3,127,736	-				-0.8
3,127,753	+				+0.7
3,127,753	+				+0.2
3,127,754	-				-0.1
3,127,754	-				-0.1
3,127,754	-				+0.6
3,127,756	+				+0.0
3,127,756	+				-2.4
3,127,756	+				+0.4
3,127,756	+				-1.0
3,127,756	+				+0.5
3,127,757	-				-0.4
3,127,757	-				-0.8
3,127,757	-				+0.7
3,127,757	-				-0.8
3,127,757	-				+0.5
3,127,757	-				+0.4
3,127,762	+				+3.2
3,127,762	+				+0.1
3,127,762	+				+1.6
3,127,762	+				-0.3
3,127,762	+				+1.7
3,127,762	+				+0.2
3,127,763	-				+0.6
3,127,763	-				-2.0
3,127,763	-				+1.6
3,127,763	-				+1.0
3,127,763	-				+0.7
3,127,763	-				-0.3
3,127,763	-				+2.1
3,127,763	-				-0.0
3,127,763	-				+0.4
3,127,763	-				-0.4
3,127,881	+		Sama_2611	0.19	-0.7
3,127,895	+		Sama_2611	0.22	+0.5
3,127,895	+		Sama_2611	0.22	-1.4
3,127,895	+		Sama_2611	0.22	-1.4
3,127,896	-		Sama_2611	0.22	-0.8
3,127,896	-		Sama_2611	0.22	+0.1
3,127,955	-		Sama_2611	0.33	-0.2
3,128,056	+		Sama_2611	0.51	-0.7
3,128,056	+		Sama_2611	0.51	+0.9
3,128,056	+		Sama_2611	0.51	-1.5
3,128,056	+		Sama_2611	0.51	+0.0
3,128,057	-		Sama_2611	0.51	-0.3
3,128,057	-		Sama_2611	0.51	-1.1
3,128,113	+		Sama_2611	0.61	+1.1
3,128,113	+		Sama_2611	0.61	+0.6
3,128,113	+		Sama_2611	0.61	-0.5
3,128,114	-		Sama_2611	0.61	+0.0
3,128,114	-		Sama_2611	0.61	+0.6
3,128,114	-		Sama_2611	0.61	+0.2
3,128,258	+		Sama_2611	0.87	-1.1
3,128,258	+		Sama_2611	0.87	+0.3
3,128,258	+		Sama_2611	0.87	+0.1
3,128,258	+		Sama_2611	0.87	-0.0
3,128,258	+		Sama_2611	0.87	+0.5
3,128,258	+		Sama_2611	0.87	-1.4
3,128,259	-		Sama_2611	0.88	+0.5
3,128,259	-		Sama_2611	0.88	+0.2
3,128,259	-		Sama_2611	0.88	-1.2
3,128,260	+		Sama_2611	0.88	+0.3
3,128,286	+				+0.5
3,128,286	+				+0.2
3,128,287	-				-0.8
3,128,287	-				-1.7
3,128,287	-				+0.9
3,128,470	+		Sama_2612	0.27	+0.7
3,128,470	+		Sama_2612	0.27	-1.7
3,128,470	+		Sama_2612	0.27	-0.9
3,128,492	+		Sama_2612	0.31	+0.1
3,128,492	+		Sama_2612	0.31	+3.3
3,128,492	+		Sama_2612	0.31	-1.4
3,128,496	+		Sama_2612	0.32	+0.9
3,128,496	+		Sama_2612	0.32	-2.0
3,128,496	+		Sama_2612	0.32	-2.1
3,128,496	+		Sama_2612	0.32	-0.4
3,128,526	+		Sama_2612	0.37	-0.4
3,128,592	+		Sama_2612	0.50	+1.0
3,128,599	+		Sama_2612	0.51	-0.1
3,128,599	+		Sama_2612	0.51	-0.9
3,128,672	+		Sama_2612	0.64	+0.4