Strain Fitness in Shewanella amazonensis SB2B around Sama_2375

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
2,851,148	+		Sama_2373	0.37	+2.2
2,851,262	+		Sama_2373	0.52	+0.0
2,851,262	+		Sama_2373	0.52	+0.3
2,851,263	-		Sama_2373	0.52	+0.6
2,851,270	+		Sama_2373	0.53	+1.8
2,851,270	+		Sama_2373	0.53	+0.4
2,851,271	-		Sama_2373	0.53	+1.3
2,851,271	-		Sama_2373	0.53	-2.3
2,851,301	-		Sama_2373	0.57	-1.6
2,851,357	+		Sama_2373	0.65	-1.1
2,851,357	+		Sama_2373	0.65	+0.6
2,851,357	+		Sama_2373	0.65	-3.0
2,851,357	+		Sama_2373	0.65	-0.9
2,851,358	-		Sama_2373	0.65	+0.6
2,851,368	+		Sama_2373	0.66	-0.3
2,851,368	+		Sama_2373	0.66	-0.2
2,851,368	+		Sama_2373	0.66	+0.4
2,851,368	+		Sama_2373	0.66	-0.4
2,851,368	+		Sama_2373	0.66	+0.5
2,851,368	+		Sama_2373	0.66	-1.2
2,851,369	-		Sama_2373	0.66	+2.6
2,851,369	-		Sama_2373	0.66	-0.6
2,851,369	-		Sama_2373	0.66	+0.6
2,851,369	-		Sama_2373	0.66	-1.3
2,851,369	-		Sama_2373	0.66	+0.1
2,851,369	-		Sama_2373	0.66	-0.2
2,851,369	-		Sama_2373	0.66	+1.2
2,851,394	+		Sama_2373	0.70	+0.2
2,851,394	+		Sama_2373	0.70	-0.3
2,851,394	+		Sama_2373	0.70	+0.5
2,851,395	-		Sama_2373	0.70	+0.8
2,851,398	+		Sama_2373	0.70	+0.8
2,851,398	+		Sama_2373	0.70	+0.2
2,851,398	+		Sama_2373	0.70	-2.5
2,851,398	+		Sama_2373	0.70	+0.5
2,851,398	+		Sama_2373	0.70	+1.8
2,851,398	+		Sama_2373	0.70	-1.1
2,851,399	-		Sama_2373	0.70	-1.1
2,851,399	-		Sama_2373	0.70	-0.6
2,851,399	-		Sama_2373	0.70	+0.0
2,851,409	+		Sama_2373	0.72	+0.4
2,851,409	+		Sama_2373	0.72	+0.3
2,851,409	+		Sama_2373	0.72	+1.0
2,851,410	-		Sama_2373	0.72	-0.3
2,851,410	-		Sama_2373	0.72	+0.3
2,851,410	-		Sama_2373	0.72	+1.0
2,851,410	-		Sama_2373	0.72	-1.1
2,851,413	+		Sama_2373	0.72	-1.3
2,851,413	+		Sama_2373	0.72	-0.7
2,851,413	+		Sama_2373	0.72	-0.2
2,851,413	+		Sama_2373	0.72	+1.0
2,851,414	-		Sama_2373	0.72	-0.3
2,851,414	-		Sama_2373	0.72	-1.2
2,851,414	-		Sama_2373	0.72	+1.6
2,851,414	-		Sama_2373	0.72	-1.2
2,851,447	+		Sama_2373	0.77	+3.1
2,851,562	+				-3.1
2,851,578	+				+0.6
2,851,617	+				+0.2
2,851,617	+				+0.3
2,851,617	+				+1.1
2,851,617	+				-0.6
2,851,618	-				+2.1
2,851,657	-		Sama_2374	0.21	+0.9
2,851,675	+		Sama_2374	0.26	-0.5
2,851,676	-		Sama_2374	0.26	-0.6
2,851,712	+		Sama_2374	0.36	+0.1
2,851,712	+		Sama_2374	0.36	+0.5
2,851,749	-		Sama_2374	0.46	+1.0
2,851,880	+		Sama_2374	0.81	-1.1
2,851,895	-		Sama_2374	0.85	+3.0
2,851,901	+		Sama_2374	0.87	+0.9
2,851,925	+				+3.0
2,851,925	+				+1.2
2,851,925	+				-0.1
2,851,926	-				-0.5
2,851,926	-				-3.0
2,851,926	-				+0.3
2,851,926	-				+0.3
2,851,944	-				+1.0
2,851,944	-				-2.9
2,851,991	+				+1.0
2,851,992	-				-0.2
2,851,992	-				+0.4
2,851,992	-				-0.1
2,851,992	-				+1.0
2,851,992	-				-0.5
2,851,992	-				+0.1
2,852,063	+				+0.3
2,852,063	+				+1.3
2,852,067	+				-0.5
2,852,067	+				-0.1
2,852,068	-				-2.2
2,852,068	-				+0.2
2,852,068	-				-0.3
2,852,068	-				-2.2
2,852,068	-				-0.7
2,852,068	-				+2.9
2,852,068	-				-1.1
2,852,068	-				+0.8
2,852,071	+				+0.9
2,852,071	+				+0.1
2,852,071	+				-1.0
2,852,072	-				+0.6
2,852,072	-				-1.7
2,852,124	+				-2.1
2,852,125	-				+1.6
2,852,169	+				-0.5
2,852,169	+				-0.7
2,852,188	+				-1.5
2,852,189	-				+0.2
2,852,192	+				-0.6
2,852,239	+				-0.7
2,852,240	-				+3.0
2,852,285	+		Sama_2375	0.10	-2.2
2,852,285	+		Sama_2375	0.10	-1.9
2,852,285	+		Sama_2375	0.10	+0.7
2,852,285	+		Sama_2375	0.10	-1.7
2,852,286	-		Sama_2375	0.10	+0.8
2,852,289	+		Sama_2375	0.11	-0.2
2,852,289	+		Sama_2375	0.11	-1.4
2,852,289	+		Sama_2375	0.11	+1.2
2,852,289	+		Sama_2375	0.11	+0.5
2,852,290	-		Sama_2375	0.11	-0.2
2,852,290	-		Sama_2375	0.11	-1.6
2,852,290	-		Sama_2375	0.11	-0.3
2,852,304	+		Sama_2375	0.12	+0.4
2,852,351	-		Sama_2375	0.15	-0.8
2,852,351	-		Sama_2375	0.15	+0.4
2,852,465	+		Sama_2375	0.23	+0.7
2,852,466	-		Sama_2375	0.23	-0.3
2,852,466	-		Sama_2375	0.23	+0.1
2,852,496	+		Sama_2375	0.25	-0.3
2,852,496	+		Sama_2375	0.25	-0.1
2,852,496	+		Sama_2375	0.25	-2.4
2,852,496	+		Sama_2375	0.25	+0.4
2,852,496	+		Sama_2375	0.25	+2.4
2,852,496	+		Sama_2375	0.25	-1.5
2,852,496	+		Sama_2375	0.25	-0.7
2,852,497	-		Sama_2375	0.25	-2.0
2,852,497	-		Sama_2375	0.25	+0.3
2,852,497	-		Sama_2375	0.25	+0.6
2,852,497	-		Sama_2375	0.25	-0.4
2,852,497	-		Sama_2375	0.25	-1.7
2,852,498	+		Sama_2375	0.25	-0.5
2,852,498	+		Sama_2375	0.25	-0.4
2,852,498	+		Sama_2375	0.25	-0.0
2,852,499	-		Sama_2375	0.25	-0.4
2,852,499	-		Sama_2375	0.25	+1.3
2,852,499	-		Sama_2375	0.25	+0.0
2,852,543	+		Sama_2375	0.28	-1.7
2,852,544	-		Sama_2375	0.28	+0.4
2,852,547	-		Sama_2375	0.29	-2.7
2,852,573	+		Sama_2375	0.30	+1.2
2,852,609	+		Sama_2375	0.33	+0.3
2,852,609	+		Sama_2375	0.33	-0.4
2,852,610	-		Sama_2375	0.33	-0.7
2,852,610	-		Sama_2375	0.33	+0.2
2,852,610	-		Sama_2375	0.33	-0.3
2,852,610	-		Sama_2375	0.33	+0.7
2,852,687	+		Sama_2375	0.38	-0.3
2,852,729	-		Sama_2375	0.41	-0.9
2,852,729	-		Sama_2375	0.41	-0.2
2,852,774	-		Sama_2375	0.44	+1.7
2,852,795	+		Sama_2375	0.46	+2.3
2,852,795	+		Sama_2375	0.46	-1.7
2,852,795	+		Sama_2375	0.46	-1.8
2,852,795	+		Sama_2375	0.46	-1.5
2,852,795	+		Sama_2375	0.46	+0.8
2,852,795	+		Sama_2375	0.46	+0.1
2,852,796	-		Sama_2375	0.46	+0.2
2,852,796	+		Sama_2375	0.46	-1.5
2,852,796	-		Sama_2375	0.46	-1.2
2,852,933	-		Sama_2375	0.55	+0.8
2,852,933	-		Sama_2375	0.55	+0.4
2,852,963	+		Sama_2375	0.57	+0.3
2,852,963	+		Sama_2375	0.57	+0.7
2,852,964	-		Sama_2375	0.58	+0.2
2,852,964	-		Sama_2375	0.58	+0.8
2,852,964	-		Sama_2375	0.58	+0.6
2,852,964	-		Sama_2375	0.58	-0.3
2,852,966	+		Sama_2375	0.58	-0.2
2,852,966	+		Sama_2375	0.58	+1.5
2,852,966	+		Sama_2375	0.58	+1.2
2,852,967	-		Sama_2375	0.58	+0.4
2,852,967	-		Sama_2375	0.58	+0.3
2,852,967	-		Sama_2375	0.58	-0.4
2,852,967	-		Sama_2375	0.58	+1.2
2,852,978	-		Sama_2375	0.59	+0.2
2,852,978	-		Sama_2375	0.59	-0.8
2,853,016	+		Sama_2375	0.61	-0.6
2,853,071	+		Sama_2375	0.65	-2.3
2,853,071	+		Sama_2375	0.65	+0.3
2,853,072	-		Sama_2375	0.65	-1.1
2,853,072	-		Sama_2375	0.65	+0.3
2,853,073	+		Sama_2375	0.65	-0.0
2,853,073	+		Sama_2375	0.65	-0.5
2,853,074	-		Sama_2375	0.65	-2.1
2,853,088	+		Sama_2375	0.66	+0.5
2,853,089	-		Sama_2375	0.66	-0.2
2,853,145	-		Sama_2375	0.70	+0.1
2,853,161	+		Sama_2375	0.71	-1.2
2,853,161	+		Sama_2375	0.71	+1.6
2,853,161	+		Sama_2375	0.71	-0.7
2,853,161	+		Sama_2375	0.71	-0.8
2,853,161	+		Sama_2375	0.71	+1.0
2,853,162	-		Sama_2375	0.71	-0.3
2,853,173	+		Sama_2375	0.72	-0.5
2,853,173	+		Sama_2375	0.72	+3.3
2,853,174	-		Sama_2375	0.72	+0.5
2,853,174	-		Sama_2375	0.72	+1.5
2,853,187	-		Sama_2375	0.73	+1.1
2,853,187	-		Sama_2375	0.73	-0.1
2,853,233	+		Sama_2375	0.76	+0.8
2,853,233	+		Sama_2375	0.76	+0.6
2,853,233	+		Sama_2375	0.76	+1.6
2,853,233	+		Sama_2375	0.76	+0.0
2,853,233	+		Sama_2375	0.76	-0.6
2,853,233	+		Sama_2375	0.76	-0.9
2,853,234	-		Sama_2375	0.76	+0.5
2,853,234	-		Sama_2375	0.76	-0.4
2,853,234	-		Sama_2375	0.76	+0.8
2,853,234	-		Sama_2375	0.76	-1.0
2,853,257	+		Sama_2375	0.78	+0.7
2,853,257	+		Sama_2375	0.78	-0.5
2,853,257	+		Sama_2375	0.78	+0.1
2,853,257	+		Sama_2375	0.78	+0.2
2,853,257	+		Sama_2375	0.78	+0.5
2,853,258	-		Sama_2375	0.78	-1.0
2,853,258	-		Sama_2375	0.78	+1.1
2,853,263	+		Sama_2375	0.78	+1.0
2,853,263	+		Sama_2375	0.78	-1.0
2,853,263	+		Sama_2375	0.78	-2.0
2,853,280	+		Sama_2375	0.80	+0.5
2,853,281	-		Sama_2375	0.80	+1.3
2,853,281	-		Sama_2375	0.80	-0.6
2,853,293	-		Sama_2375	0.80	+1.4
2,853,355	+		Sama_2375	0.85	+1.0
2,853,356	-		Sama_2375	0.85	-0.8
2,853,415	+		Sama_2375	0.89	-0.5
2,853,415	+		Sama_2375	0.89	+0.8
2,853,416	-		Sama_2375	0.89	-0.1
2,853,416	-		Sama_2375	0.89	-1.2
2,853,416	-		Sama_2375	0.89	+3.6
2,853,500	+				-0.0
2,853,500	+				+1.1
2,853,501	-				-1.7
2,853,501	-				-0.3
2,853,501	-				-0.5
2,853,523	+				+0.1
2,853,524	-				-0.2
2,853,524	-				+1.2
2,853,572	+				+2.7
2,853,573	-				+0.0
2,853,590	+				+0.3
2,853,591	-				-0.2
2,853,616	-				-1.0
2,853,616	-				+2.2
2,853,626	-				-2.0
2,853,639	-				+0.1
2,853,639	-				-1.2
2,853,660	+				-0.0
2,853,692	+				+0.5
2,853,692	+				-0.3
2,853,693	-				-0.6
2,853,693	-				-0.1
2,853,693	-				+1.1
2,853,770	+		Sama_2376	0.11	+0.6
2,853,770	+		Sama_2376	0.11	+0.2
2,853,771	-		Sama_2376	0.11	-1.5
2,853,771	-		Sama_2376	0.11	+1.2
2,853,771	-		Sama_2376	0.11	-0.0
2,853,830	+		Sama_2376	0.14	-0.2
2,853,831	-		Sama_2376	0.14	-0.6
2,853,860	+		Sama_2376	0.16	+0.2
2,853,999	-		Sama_2376	0.24	-0.5
2,854,008	-		Sama_2376	0.25	+1.2
2,854,013	+		Sama_2376	0.25	+0.3
2,854,014	-		Sama_2376	0.25	+0.2
2,854,023	+		Sama_2376	0.25	+1.3
2,854,023	+		Sama_2376	0.25	+0.3
2,854,066	+		Sama_2376	0.28	-1.3
2,854,122	+		Sama_2376	0.31	-1.7
2,854,123	-		Sama_2376	0.31	+2.3
2,854,123	-		Sama_2376	0.31	-0.2
2,854,125	+		Sama_2376	0.31	-0.5
2,854,126	-		Sama_2376	0.31	-0.3
2,854,137	+		Sama_2376	0.32	-0.8
2,854,218	+		Sama_2376	0.37	-0.3
2,854,218	+		Sama_2376	0.37	-1.0
2,854,218	+		Sama_2376	0.37	+0.1
2,854,219	-		Sama_2376	0.37	+1.0
2,854,219	-		Sama_2376	0.37	-0.2
2,854,229	+		Sama_2376	0.37	-0.7
2,854,229	+		Sama_2376	0.37	-0.9
2,854,229	+		Sama_2376	0.37	-1.5
2,854,230	-		Sama_2376	0.37	+2.4
2,854,278	-		Sama_2376	0.40	-0.8
2,854,298	+		Sama_2376	0.41	+1.6
2,854,298	+		Sama_2376	0.41	+0.0
2,854,298	+		Sama_2376	0.41	+0.5
2,854,298	+		Sama_2376	0.41	-0.2
2,854,298	+		Sama_2376	0.41	+0.8
2,854,298	+		Sama_2376	0.41	-0.7
2,854,298	+		Sama_2376	0.41	+1.3
2,854,299	-		Sama_2376	0.41	-1.2
2,854,299	-		Sama_2376	0.41	-0.7
2,854,299	-		Sama_2376	0.41	+0.2
2,854,423	-		Sama_2376	0.48	-0.1
2,854,423	-		Sama_2376	0.48	-0.8
2,854,573	-		Sama_2376	0.57	-0.6
2,854,573	-		Sama_2376	0.57	-0.4
2,854,573	-		Sama_2376	0.57	+1.2