Strain Fitness in Shewanella amazonensis SB2B around Sama_1758

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
2,149,396	+		Sama_1757	0.63	-0.3
2,149,411	-		Sama_1757	0.64	-0.5
2,149,432	+		Sama_1757	0.65	+1.3
2,149,433	-		Sama_1757	0.65	-0.3
2,149,433	-		Sama_1757	0.65	-1.0
2,149,433	-		Sama_1757	0.65	+0.3
2,149,489	+		Sama_1757	0.68	-2.1
2,149,489	+		Sama_1757	0.68	+0.3
2,149,511	+		Sama_1757	0.69	-0.5
2,149,528	+		Sama_1757	0.69	-0.9
2,149,528	+		Sama_1757	0.69	-0.6
2,149,529	-		Sama_1757	0.69	-0.1
2,149,529	-		Sama_1757	0.69	+1.8
2,149,573	+		Sama_1757	0.72	+0.3
2,149,573	+		Sama_1757	0.72	-0.5
2,149,573	+		Sama_1757	0.72	-1.6
2,149,577	+		Sama_1757	0.72	+0.6
2,149,578	-		Sama_1757	0.72	+0.2
2,149,578	-		Sama_1757	0.72	+0.6
2,149,657	+		Sama_1757	0.76	+0.6
2,149,657	+		Sama_1757	0.76	+0.5
2,149,657	+		Sama_1757	0.76	+0.2
2,149,692	+		Sama_1757	0.77	+1.6
2,149,693	-		Sama_1757	0.77	-0.7
2,149,741	-		Sama_1757	0.80	-2.7
2,149,741	-		Sama_1757	0.80	+0.5
2,149,789	+		Sama_1757	0.82	-1.0
2,149,802	+		Sama_1757	0.83	-1.5
2,149,802	+		Sama_1757	0.83	-0.4
2,149,802	+		Sama_1757	0.83	-1.0
2,149,927	+		Sama_1757	0.89	+0.8
2,149,928	-		Sama_1757	0.89	-1.7
2,149,928	-		Sama_1757	0.89	-0.3
2,149,932	+		Sama_1757	0.89	+0.2
2,149,932	+		Sama_1757	0.89	-0.8
2,149,932	+		Sama_1757	0.89	-0.0
2,149,932	+		Sama_1757	0.89	+0.8
2,149,938	+		Sama_1757	0.89	-0.6
2,149,965	-				+0.4
2,150,060	-				+1.3
2,150,100	+				-0.6
2,150,100	+				-0.2
2,150,120	+				-2.1
2,150,121	-				+0.9
2,150,121	-				+0.9
2,150,124	+				-1.7
2,150,124	+				+0.9
2,150,134	+				+0.1
2,150,134	+				+0.1
2,150,140	+				+1.5
2,150,140	+				+1.6
2,150,140	+				+0.1
2,150,141	-				-0.9
2,150,141	-				-0.6
2,150,141	-				+1.8
2,150,144	+				+0.1
2,150,145	+				-1.7
2,150,145	-				-0.2
2,150,157	+				+0.0
2,150,157	+				+0.8
2,150,157	+				+0.7
2,150,164	+				+0.0
2,150,165	-				-0.6
2,150,250	-				+0.1
2,150,293	-				+1.6
2,150,298	+				+2.9
2,150,299	-				-1.1
2,150,407	+				-0.3
2,150,408	-				-1.4
2,150,408	-				+0.3
2,150,408	-				-1.7
2,150,463	-				+0.2
2,150,471	+				-3.0
2,150,472	-				-0.8
2,150,472	-				-0.5
2,150,478	-				+0.2
2,150,478	-				+0.3
2,150,523	+		Sama_1758	0.12	-1.1
2,150,523	+		Sama_1758	0.12	+1.6
2,150,523	+		Sama_1758	0.12	-0.4
2,150,527	+		Sama_1758	0.12	+1.3
2,150,528	-		Sama_1758	0.12	+0.7
2,150,534	+		Sama_1758	0.12	+0.2
2,150,535	-		Sama_1758	0.13	-0.4
2,150,590	+		Sama_1758	0.16	-2.0
2,150,591	-		Sama_1758	0.16	-0.9
2,150,591	-		Sama_1758	0.16	+0.1
2,150,591	-		Sama_1758	0.16	-1.5
2,150,591	-		Sama_1758	0.16	-1.1
2,150,591	-		Sama_1758	0.16	-0.5
2,150,591	-		Sama_1758	0.16	+0.5
2,150,592	+		Sama_1758	0.16	-1.8
2,150,593	-		Sama_1758	0.16	+0.1
2,150,593	-		Sama_1758	0.16	-0.2
2,150,593	-		Sama_1758	0.16	+1.6
2,150,596	+		Sama_1758	0.16	+0.1
2,150,597	-		Sama_1758	0.16	-0.3
2,150,665	+		Sama_1758	0.21	+0.3
2,150,666	-		Sama_1758	0.21	+0.4
2,150,666	-		Sama_1758	0.21	+0.0
2,150,666	-		Sama_1758	0.21	-0.3
2,150,697	-		Sama_1758	0.23	-0.8
2,150,725	-		Sama_1758	0.24	+0.8
2,150,737	-		Sama_1758	0.25	-0.2
2,150,775	+		Sama_1758	0.27	-1.2
2,150,833	+		Sama_1758	0.31	-0.6
2,150,842	+		Sama_1758	0.32	+0.2
2,150,842	+		Sama_1758	0.32	-1.8
2,150,862	+		Sama_1758	0.33	-0.2
2,150,871	+		Sama_1758	0.33	+1.0
2,150,892	+		Sama_1758	0.35	+0.2
2,150,899	+		Sama_1758	0.35	-1.5
2,150,900	-		Sama_1758	0.35	-0.9
2,150,903	+		Sama_1758	0.35	-0.1
2,150,935	+		Sama_1758	0.37	+0.7
2,150,936	-		Sama_1758	0.37	+0.0
2,150,936	-		Sama_1758	0.37	+1.5
2,150,937	+		Sama_1758	0.37	+0.0
2,150,956	+		Sama_1758	0.39	-0.3
2,150,956	+		Sama_1758	0.39	+0.7
2,151,064	+		Sama_1758	0.45	-0.5
2,151,067	+		Sama_1758	0.45	-0.6
2,151,067	+		Sama_1758	0.45	+0.7
2,151,067	+		Sama_1758	0.45	-1.0
2,151,067	+		Sama_1758	0.45	-1.2
2,151,067	+		Sama_1758	0.45	+0.5
2,151,068	-		Sama_1758	0.46	+0.5
2,151,068	-		Sama_1758	0.46	-0.4
2,151,068	-		Sama_1758	0.46	-0.3
2,151,119	+		Sama_1758	0.49	-0.5
2,151,119	+		Sama_1758	0.49	-1.9
2,151,119	+		Sama_1758	0.49	-0.1
2,151,119	+		Sama_1758	0.49	-0.1
2,151,171	+		Sama_1758	0.52	-1.1
2,151,171	+		Sama_1758	0.52	-1.4
2,151,171	+		Sama_1758	0.52	+1.2
2,151,172	-		Sama_1758	0.52	-2.3
2,151,172	-		Sama_1758	0.52	-3.3
2,151,172	-		Sama_1758	0.52	+3.3
2,151,199	+		Sama_1758	0.54	+0.4
2,151,229	-		Sama_1758	0.55	+2.3
2,151,233	+		Sama_1758	0.56	-0.2
2,151,268	+		Sama_1758	0.58	-0.4
2,151,268	+		Sama_1758	0.58	-0.6
2,151,269	-		Sama_1758	0.58	+0.0
2,151,294	+		Sama_1758	0.59	+0.8
2,151,294	+		Sama_1758	0.59	-0.4
2,151,294	+		Sama_1758	0.59	-0.6
2,151,294	+		Sama_1758	0.59	-0.2
2,151,402	+		Sama_1758	0.66	+0.6
2,151,407	+		Sama_1758	0.66	-0.2
2,151,408	-		Sama_1758	0.67	+0.2
2,151,450	+		Sama_1758	0.69	+1.4
2,151,451	-		Sama_1758	0.69	+1.7
2,151,454	-		Sama_1758	0.69	-0.5
2,151,471	+		Sama_1758	0.70	-0.9
2,151,471	+		Sama_1758	0.70	+0.3
2,151,471	+		Sama_1758	0.70	+1.2
2,151,471	+		Sama_1758	0.70	+2.3
2,151,471	+		Sama_1758	0.70	-0.5
2,151,471	+		Sama_1758	0.70	+3.2
2,151,472	-		Sama_1758	0.71	+2.2
2,151,475	+		Sama_1758	0.71	+0.5
2,151,475	+		Sama_1758	0.71	+0.8
2,151,502	-		Sama_1758	0.72	+0.2
2,151,567	+		Sama_1758	0.76	+1.4
2,151,567	+		Sama_1758	0.76	-1.8
2,151,567	+		Sama_1758	0.76	+0.2
2,151,572	-		Sama_1758	0.77	+0.5
2,151,589	+		Sama_1758	0.78	+0.3
2,151,598	+		Sama_1758	0.78	+1.4
2,151,598	+		Sama_1758	0.78	+0.2
2,151,598	+		Sama_1758	0.78	+1.5
2,151,598	+		Sama_1758	0.78	-1.7
2,151,618	+		Sama_1758	0.80	+3.2
2,151,618	+		Sama_1758	0.80	-1.0
2,151,619	-		Sama_1758	0.80	+0.8
2,151,621	+		Sama_1758	0.80	+1.8
2,151,622	-		Sama_1758	0.80	+4.1
2,151,664	+		Sama_1758	0.82	+0.1
2,151,664	+		Sama_1758	0.82	-0.9
2,151,664	+		Sama_1758	0.82	-0.9
2,151,664	+		Sama_1758	0.82	-0.5
2,151,664	+		Sama_1758	0.82	+1.2
2,151,664	+		Sama_1758	0.82	-1.1
2,151,664	+		Sama_1758	0.82	+0.0
2,151,664	+		Sama_1758	0.82	-0.5
2,151,664	+		Sama_1758	0.82	+0.2
2,151,664	+		Sama_1758	0.82	+1.0
2,151,664	+		Sama_1758	0.82	-0.3
2,151,665	-		Sama_1758	0.82	-0.2
2,151,665	-		Sama_1758	0.82	+0.0
2,151,665	-		Sama_1758	0.82	+3.1
2,151,665	-		Sama_1758	0.82	+1.3
2,151,666	+		Sama_1758	0.82	+0.0
2,151,706	+		Sama_1758	0.85	+2.7
2,151,706	+		Sama_1758	0.85	+0.0
2,151,725	-		Sama_1758	0.86	+0.2
2,151,854	+				-1.3
2,151,854	+				-0.1
2,151,855	-				+0.6
2,151,855	-				+0.5
2,151,896	+				-0.4
2,151,896	+				+1.0
2,151,896	+				-0.5
2,151,896	+				-1.5
2,151,896	+				+0.5
2,151,896	+				+1.7
2,151,896	+				-3.2
2,151,897	-				-0.5
2,151,897	-				+1.1
2,151,897	-				-1.6
2,151,897	-				-0.5
2,151,897	-				+0.1
2,151,897	-				-0.0
2,151,898	+				-0.5
2,151,898	+				+0.1
2,151,898	+				+1.0
2,151,898	+				-0.8
2,151,898	+				+0.5
2,151,945	-				-0.4
2,152,027	+				-2.2
2,152,028	-				-1.0
2,152,028	-				-0.1
2,152,028	-				+0.3
2,152,130	-		Sama_1759	0.13	+0.8
2,152,143	+		Sama_1759	0.14	+1.4
2,152,155	+		Sama_1759	0.15	+0.9
2,152,161	+		Sama_1759	0.16	-0.1
2,152,161	+		Sama_1759	0.16	+1.3
2,152,164	+		Sama_1759	0.16	-0.3
2,152,164	+		Sama_1759	0.16	+0.1
2,152,255	-		Sama_1759	0.25	+2.2
2,152,255	-		Sama_1759	0.25	+0.0
2,152,274	+		Sama_1759	0.26	-0.9
2,152,275	-		Sama_1759	0.26	+0.8
2,152,275	-		Sama_1759	0.26	-0.8
2,152,288	+		Sama_1759	0.28	+0.8
2,152,333	+		Sama_1759	0.32	-0.3
2,152,387	+		Sama_1759	0.37	-0.8
2,152,387	+		Sama_1759	0.37	-0.3
2,152,480	+		Sama_1759	0.46	-0.7
2,152,480	+		Sama_1759	0.46	-1.0
2,152,481	-		Sama_1759	0.46	+1.0
2,152,541	-		Sama_1759	0.51	-0.1
2,152,548	+		Sama_1759	0.52	-1.7
2,152,570	+		Sama_1759	0.54	+0.0
2,152,643	-		Sama_1759	0.61	-0.5
2,152,691	+		Sama_1759	0.65	-0.1
2,152,743	+		Sama_1759	0.70	+0.7
2,152,743	+		Sama_1759	0.70	+0.4
2,152,743	+		Sama_1759	0.70	+0.7
2,152,743	+		Sama_1759	0.70	-0.2
2,152,743	+		Sama_1759	0.70	+0.1
2,152,743	+		Sama_1759	0.70	+1.3
2,152,743	+		Sama_1759	0.70	+0.0
2,152,744	-		Sama_1759	0.70	+3.0
2,152,744	-		Sama_1759	0.70	+0.6
2,152,933	+		Sama_1759	0.88	-0.7
2,152,933	+		Sama_1759	0.88	-2.3