Strain Fitness in Shewanella amazonensis SB2B around Sama_1282

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
1,570,255	+		Sama_1280	0.89	-2.7
1,570,256	-		Sama_1280	0.89	+0.3
1,570,256	-		Sama_1280	0.89	+1.4
1,570,282	+				-0.2
1,570,282	+				-2.1
1,570,282	+				+0.6
1,570,282	+				-1.4
1,570,282	+				+2.2
1,570,282	+				+0.2
1,570,282	+				+0.7
1,570,282	+				+1.5
1,570,283	-				-1.2
1,570,283	-				+0.1
1,570,283	-				+1.0
1,570,283	-				+1.2
1,570,283	-				+0.4
1,570,283	-				-0.2
1,570,283	-				-0.1
1,570,331	+				+0.4
1,570,401	+				+1.7
1,570,402	-				+1.2
1,570,440	+				-0.3
1,570,440	+				-1.7
1,570,440	+				+0.9
1,570,452	-				-0.5
1,570,538	-				-0.2
1,570,559	+				+0.4
1,570,559	+				+1.5
1,570,559	+				+1.4
1,570,559	+				+2.1
1,570,569	-				-1.3
1,570,689	+		Sama_1281	0.22	+2.5
1,570,759	-		Sama_1281	0.31	+2.3
1,570,759	-		Sama_1281	0.31	-1.3
1,570,759	-		Sama_1281	0.31	-0.6
1,570,789	+		Sama_1281	0.36	+1.8
1,570,789	+		Sama_1281	0.36	+0.3
1,570,790	-		Sama_1281	0.36	-2.5
1,570,790	-		Sama_1281	0.36	-0.2
1,570,790	-		Sama_1281	0.36	+0.1
1,570,790	-		Sama_1281	0.36	+0.6
1,570,790	-		Sama_1281	0.36	+0.4
1,570,827	-		Sama_1281	0.41	+1.0
1,570,955	-		Sama_1281	0.59	+0.3
1,570,990	+		Sama_1281	0.64	+0.9
1,570,990	+		Sama_1281	0.64	+1.3
1,570,990	+		Sama_1281	0.64	-0.8
1,570,990	+		Sama_1281	0.64	+0.8
1,570,990	+		Sama_1281	0.64	+3.7
1,570,991	-		Sama_1281	0.64	-0.2
1,571,027	+		Sama_1281	0.69	+1.6
1,571,028	-		Sama_1281	0.69	+1.7
1,571,028	-		Sama_1281	0.69	+1.7
1,571,108	+		Sama_1281	0.80	+0.8
1,571,108	+		Sama_1281	0.80	+0.4
1,571,108	+		Sama_1281	0.80	+0.5
1,571,108	+		Sama_1281	0.80	+0.3
1,571,118	+		Sama_1281	0.82	+1.2
1,571,118	+		Sama_1281	0.82	+1.2
1,571,119	-		Sama_1281	0.82	-1.2
1,571,127	+		Sama_1281	0.83	+1.7
1,571,187	+				-0.8
1,571,187	+				+0.0
1,571,188	-				+0.0
1,571,386	+				+1.0
1,571,386	+				+1.3
1,571,387	-				+0.6
1,571,434	-		Sama_1282	0.11	+0.1
1,571,537	+		Sama_1282	0.17	-0.3
1,571,566	+		Sama_1282	0.19	+0.5
1,571,567	-		Sama_1282	0.19	-0.5
1,571,567	-		Sama_1282	0.19	-0.5
1,571,567	-		Sama_1282	0.19	-0.6
1,571,576	+		Sama_1282	0.19	+1.7
1,571,611	+		Sama_1282	0.22	+0.3
1,571,612	-		Sama_1282	0.22	-1.3
1,571,632	+		Sama_1282	0.23	+0.7
1,571,658	+		Sama_1282	0.24	+0.9
1,571,668	+		Sama_1282	0.25	-0.8
1,571,668	+		Sama_1282	0.25	+0.5
1,571,738	+		Sama_1282	0.29	+1.3
1,571,797	+		Sama_1282	0.32	+0.7
1,571,798	-		Sama_1282	0.32	-2.1
1,571,798	-		Sama_1282	0.32	-0.0
1,571,798	-		Sama_1282	0.32	+0.3
1,571,798	-		Sama_1282	0.32	+0.9
1,571,801	-		Sama_1282	0.33	+0.0
1,571,801	-		Sama_1282	0.33	+0.4
1,571,829	-		Sama_1282	0.34	+1.3
1,571,848	+		Sama_1282	0.35	+0.8
1,571,895	+		Sama_1282	0.38	+1.7
1,571,896	-		Sama_1282	0.38	+1.6
1,571,961	-		Sama_1282	0.42	-0.2
1,571,986	+		Sama_1282	0.43	+2.6
1,571,987	-		Sama_1282	0.44	+0.5
1,571,987	-		Sama_1282	0.44	-2.6
1,571,996	+		Sama_1282	0.44	+2.8
1,571,996	+		Sama_1282	0.44	+0.2
1,572,007	+		Sama_1282	0.45	+0.6
1,572,062	-		Sama_1282	0.48	-0.2
1,572,102	-		Sama_1282	0.50	+1.4
1,572,102	-		Sama_1282	0.50	-1.9
1,572,102	-		Sama_1282	0.50	+1.2
1,572,118	+		Sama_1282	0.51	+0.4
1,572,159	-		Sama_1282	0.54	-0.5
1,572,160	+		Sama_1282	0.54	+0.9
1,572,160	+		Sama_1282	0.54	+1.0
1,572,160	+		Sama_1282	0.54	+2.6
1,572,160	+		Sama_1282	0.54	-0.0
1,572,160	+		Sama_1282	0.54	+1.7
1,572,160	+		Sama_1282	0.54	+0.8
1,572,160	+		Sama_1282	0.54	+1.4
1,572,160	+		Sama_1282	0.54	+2.3
1,572,161	-		Sama_1282	0.54	-1.3
1,572,161	-		Sama_1282	0.54	+1.2
1,572,161	-		Sama_1282	0.54	+0.7
1,572,178	+		Sama_1282	0.55	-0.2
1,572,185	-		Sama_1282	0.55	-0.5
1,572,280	+		Sama_1282	0.61	+1.5
1,572,355	+		Sama_1282	0.65	+1.7
1,572,355	+		Sama_1282	0.65	+1.1
1,572,356	-		Sama_1282	0.65	-0.2
1,572,391	+		Sama_1282	0.67	+0.3
1,572,392	-		Sama_1282	0.67	-0.7
1,572,468	+		Sama_1282	0.72	+0.4
1,572,468	+		Sama_1282	0.72	+1.4
1,572,468	+		Sama_1282	0.72	-3.2
1,572,469	-		Sama_1282	0.72	+0.9
1,572,488	+		Sama_1282	0.73	-0.6
1,572,488	+		Sama_1282	0.73	+0.7
1,572,488	+		Sama_1282	0.73	+1.0
1,572,488	+		Sama_1282	0.73	-0.2
1,572,516	+		Sama_1282	0.74	+1.2
1,572,517	-		Sama_1282	0.75	+0.3
1,572,523	+		Sama_1282	0.75	+0.0
1,572,523	+		Sama_1282	0.75	+1.3
1,572,523	+		Sama_1282	0.75	-0.4
1,572,524	-		Sama_1282	0.75	+0.1
1,572,524	-		Sama_1282	0.75	-0.2
1,572,592	+		Sama_1282	0.79	-0.1
1,572,593	-		Sama_1282	0.79	-0.1
1,572,661	+		Sama_1282	0.83	+2.6
1,572,661	+		Sama_1282	0.83	-0.9
1,572,661	+		Sama_1282	0.83	+0.0
1,572,661	+		Sama_1282	0.83	-0.5
1,572,661	+		Sama_1282	0.83	+1.2
1,572,661	+		Sama_1282	0.83	+0.5
1,572,661	+		Sama_1282	0.83	+1.4
1,572,661	+		Sama_1282	0.83	+0.7
1,572,662	-		Sama_1282	0.83	-0.0
1,572,662	-		Sama_1282	0.83	-1.1
1,572,662	-		Sama_1282	0.83	+0.0
1,572,662	-		Sama_1282	0.83	+0.4
1,572,662	-		Sama_1282	0.83	-0.2
1,572,663	+		Sama_1282	0.83	+0.9
1,572,663	+		Sama_1282	0.83	+1.6
1,572,663	+		Sama_1282	0.83	+0.5
1,572,663	+		Sama_1282	0.83	+1.3
1,572,663	+		Sama_1282	0.83	+0.6
1,572,664	-		Sama_1282	0.83	+1.2
1,572,664	-		Sama_1282	0.83	+1.1
1,572,664	-		Sama_1282	0.83	+0.5
1,572,664	-		Sama_1282	0.83	+3.2
1,572,664	-		Sama_1282	0.83	+0.8
1,572,732	-		Sama_1282	0.87	-1.3
1,572,786	+				-1.2
1,572,797	-				-0.4
1,572,817	+				+1.5
1,572,817	+				-0.5
1,572,822	+				+1.5
1,572,822	+				+1.0
1,572,822	+				+1.3
1,572,822	+				+2.4
1,572,822	+				-0.0
1,572,822	+				-1.5
1,572,822	+				+0.9
1,572,822	+				+0.5
1,572,822	+				+0.5
1,572,822	+				+0.4
1,572,822	+				-1.6
1,572,823	-				-0.7
1,572,823	-				+0.5
1,572,823	-				+3.8
1,572,823	-				-0.6
1,572,823	-				-0.2
1,572,823	-				+0.7
1,572,912	+				-2.0
1,572,912	+				+0.0
1,572,912	+				+0.9
1,572,913	-				+0.4
1,572,973	+				+1.4
1,572,976	+				+0.8
1,572,977	-				-1.7
1,573,024	+				+1.2
1,573,025	-				+1.2
1,573,025	-				+0.4
1,573,025	-				-0.3
1,573,058	+				-0.6
1,573,058	+				-0.3
1,573,058	+				-2.9
1,573,058	+				+0.4
1,573,058	+				+0.8
1,573,059	-				+0.5
1,573,059	-				-1.1
1,573,059	-				-0.3
1,573,059	-				+0.1
1,573,124	+		Sama_1283	0.18	+0.0
1,573,125	-		Sama_1283	0.18	+0.3
1,573,223	+		Sama_1283	0.58	+0.1
1,573,238	+		Sama_1283	0.65	+0.2
1,573,238	+		Sama_1283	0.65	-0.1
1,573,239	-		Sama_1283	0.65	-0.4
1,573,239	-		Sama_1283	0.65	-0.5
1,573,242	-		Sama_1283	0.66	+0.3
1,573,321	+				+2.5
1,573,321	+				-0.5
1,573,321	+				-0.5
1,573,321	+				+1.0
1,573,321	+				-1.9
1,573,322	-				-1.5
1,573,322	-				-0.2
1,573,322	-				+0.3
1,573,322	-				+1.2
1,573,322	-				-0.5
1,573,385	-		Sama_1284	0.19	+0.7
1,573,398	-		Sama_1284	0.22	-0.4
1,573,455	-		Sama_1284	0.39	-0.7
1,573,475	+		Sama_1284	0.45	-2.0
1,573,476	-		Sama_1284	0.45	+0.5
1,573,493	-		Sama_1284	0.50	+2.8
1,573,512	-		Sama_1284	0.55	+0.2
1,573,563	-		Sama_1284	0.70	+1.0
1,573,563	-		Sama_1284	0.70	-1.5
1,573,563	-		Sama_1284	0.70	+0.5
1,573,579	+		Sama_1284	0.74	-0.7
1,573,580	-		Sama_1284	0.75	-1.2
1,573,580	-		Sama_1284	0.75	-2.7
1,573,643	+				-0.6
1,573,643	+				+0.3
1,573,651	-				+0.2
1,573,651	-				+0.3
1,573,660	-				+0.0
1,573,784	+		Sama_1285	0.19	+0.2
1,573,784	+		Sama_1285	0.19	+0.3
1,573,784	+		Sama_1285	0.19	+1.0
1,573,785	-		Sama_1285	0.20	-0.5
1,573,785	-		Sama_1285	0.20	-0.0
1,573,836	+		Sama_1285	0.27	+0.4
1,573,836	+		Sama_1285	0.27	-1.1
1,573,836	+		Sama_1285	0.27	+0.8
1,573,836	+		Sama_1285	0.27	-0.3
1,573,837	-		Sama_1285	0.27	+0.8
1,573,837	-		Sama_1285	0.27	-1.1
1,573,837	-		Sama_1285	0.27	-0.4
1,573,935	+		Sama_1285	0.42	+2.0
1,573,935	+		Sama_1285	0.42	-0.3
1,573,935	+		Sama_1285	0.42	+1.5
1,573,936	-		Sama_1285	0.42	+0.5
1,573,942	-		Sama_1285	0.43	+2.5
1,573,942	-		Sama_1285	0.43	+0.9