Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0393 and Sama_0394 are separated by 177 nucleotides Sama_0394 and purH are separated by 57 nucleotides
Sama_0393: Sama_0393 - hypothetical protein (RefSeq), at 486,460 to 489,684
_0393
Sama_0394: Sama_0394 - phosphoribosylamine--glycine ligase (RefSeq), at 489,862 to 491,157
_0394
Sama_0395: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq), at 491,215 to 492,804
purH
Position (kb) 489
490
491
492 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 488.894 kb on + strand, within Sama_0393 at 488.894 kb on + strand, within Sama_0393 at 488.895 kb on - strand, within Sama_0393 at 488.895 kb on - strand, within Sama_0393 at 488.895 kb on - strand, within Sama_0393 at 488.932 kb on + strand, within Sama_0393 at 488.932 kb on + strand, within Sama_0393 at 488.932 kb on + strand, within Sama_0393 at 488.932 kb on + strand, within Sama_0393 at 488.932 kb on + strand, within Sama_0393 at 488.933 kb on - strand, within Sama_0393 at 488.933 kb on - strand, within Sama_0393 at 488.933 kb on - strand, within Sama_0393 at 488.933 kb on - strand, within Sama_0393 at 488.933 kb on - strand, within Sama_0393 at 488.997 kb on + strand, within Sama_0393 at 488.998 kb on - strand, within Sama_0393 at 489.131 kb on - strand, within Sama_0393 at 489.131 kb on - strand, within Sama_0393 at 489.131 kb on - strand, within Sama_0393 at 489.131 kb on - strand, within Sama_0393 at 489.215 kb on + strand, within Sama_0393 at 489.215 kb on + strand, within Sama_0393 at 489.216 kb on - strand, within Sama_0393 at 489.216 kb on - strand, within Sama_0393 at 489.216 kb on - strand, within Sama_0393 at 489.283 kb on - strand, within Sama_0393 at 489.283 kb on - strand, within Sama_0393 at 489.345 kb on + strand, within Sama_0393 at 489.345 kb on + strand, within Sama_0393 at 489.392 kb on + strand at 489.393 kb on - strand at 489.393 kb on - strand at 489.429 kb on + strand at 489.429 kb on + strand at 489.429 kb on + strand at 489.430 kb on - strand at 489.430 kb on - strand at 489.430 kb on - strand at 489.432 kb on + strand at 489.432 kb on + strand at 489.432 kb on + strand at 489.432 kb on + strand at 489.433 kb on - strand at 489.441 kb on + strand at 489.442 kb on - strand at 489.442 kb on - strand at 489.442 kb on - strand at 489.443 kb on + strand at 489.444 kb on - strand at 489.444 kb on - strand at 489.444 kb on - strand at 489.460 kb on + strand at 489.461 kb on - strand at 489.461 kb on - strand at 489.548 kb on + strand at 489.548 kb on + strand at 489.549 kb on - strand at 489.549 kb on - strand at 489.617 kb on + strand at 489.617 kb on + strand at 489.618 kb on - strand at 489.658 kb on - strand at 489.714 kb on + strand at 489.714 kb on + strand at 489.728 kb on + strand at 489.728 kb on + strand at 489.728 kb on + strand at 489.728 kb on + strand at 489.728 kb on + strand at 489.728 kb on + strand at 489.729 kb on - strand at 489.729 kb on - strand at 489.729 kb on - strand at 489.729 kb on - strand at 489.729 kb on - strand at 489.731 kb on - strand at 489.751 kb on - strand at 489.758 kb on + strand at 489.759 kb on - strand at 489.762 kb on + strand at 489.762 kb on + strand at 489.762 kb on + strand at 489.765 kb on - strand at 489.767 kb on + strand at 489.767 kb on + strand at 489.792 kb on - strand at 489.860 kb on - strand at 489.860 kb on - strand at 489.860 kb on - strand at 489.863 kb on + strand at 489.863 kb on + strand at 489.863 kb on + strand at 489.864 kb on - strand at 489.864 kb on - strand at 489.904 kb on - strand at 489.911 kb on + strand at 489.912 kb on - strand at 489.947 kb on + strand at 489.947 kb on + strand at 489.947 kb on + strand at 489.947 kb on + strand at 489.978 kb on + strand at 489.978 kb on + strand at 489.979 kb on - strand at 490.000 kb on + strand, within Sama_0394 at 490.000 kb on + strand, within Sama_0394 at 490.286 kb on + strand, within Sama_0394 at 490.287 kb on - strand, within Sama_0394 at 490.287 kb on - strand, within Sama_0394 at 490.287 kb on - strand, within Sama_0394 at 490.334 kb on + strand, within Sama_0394 at 490.334 kb on + strand, within Sama_0394 at 490.335 kb on - strand, within Sama_0394 at 490.335 kb on - strand, within Sama_0394 at 490.335 kb on - strand, within Sama_0394 at 490.335 kb on - strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.349 kb on + strand, within Sama_0394 at 490.350 kb on - strand, within Sama_0394 at 490.350 kb on - strand, within Sama_0394 at 490.392 kb on + strand, within Sama_0394 at 490.392 kb on + strand, within Sama_0394 at 490.393 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.418 kb on - strand, within Sama_0394 at 490.448 kb on + strand, within Sama_0394 at 490.448 kb on + strand, within Sama_0394 at 490.448 kb on + strand, within Sama_0394 at 490.554 kb on + strand, within Sama_0394 at 490.588 kb on + strand, within Sama_0394 at 490.588 kb on + strand, within Sama_0394 at 490.588 kb on + strand, within Sama_0394 at 490.588 kb on + strand, within Sama_0394 at 490.589 kb on - strand, within Sama_0394 at 490.589 kb on - strand, within Sama_0394 at 490.589 kb on - strand, within Sama_0394 at 490.589 kb on - strand, within Sama_0394 at 490.591 kb on + strand, within Sama_0394 at 490.591 kb on + strand, within Sama_0394 at 490.591 kb on + strand, within Sama_0394 at 490.592 kb on - strand, within Sama_0394 at 490.592 kb on - strand, within Sama_0394 at 490.592 kb on - strand, within Sama_0394 at 490.635 kb on + strand, within Sama_0394 at 490.635 kb on + strand, within Sama_0394 at 490.635 kb on + strand, within Sama_0394 at 490.636 kb on - strand, within Sama_0394 at 490.678 kb on - strand, within Sama_0394 at 490.690 kb on - strand, within Sama_0394 at 490.875 kb on + strand, within Sama_0394 at 490.875 kb on + strand, within Sama_0394 at 490.875 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.951 kb on + strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 490.952 kb on - strand, within Sama_0394 at 491.074 kb on + strand at 491.074 kb on + strand at 491.075 kb on - strand at 491.075 kb on - strand at 491.075 kb on - strand at 491.075 kb on - strand at 491.075 kb on - strand at 491.079 kb on + strand at 491.079 kb on + strand at 491.080 kb on - strand at 491.080 kb on - strand at 491.080 kb on - strand at 491.083 kb on + strand at 491.083 kb on + strand at 491.083 kb on + strand at 491.083 kb on + strand at 491.084 kb on - strand at 491.084 kb on - strand at 491.151 kb on + strand at 491.152 kb on - strand at 491.163 kb on + strand at 491.163 kb on + strand at 491.164 kb on - strand at 491.170 kb on + strand at 491.170 kb on + strand at 491.210 kb on + strand at 491.211 kb on - strand at 491.211 kb on - strand at 491.211 kb on - strand at 491.213 kb on + strand at 491.213 kb on + strand at 491.213 kb on + strand at 491.299 kb on - strand at 491.352 kb on + strand at 491.450 kb on + strand, within purH at 491.482 kb on + strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.483 kb on - strand, within purH at 491.504 kb on + strand, within purH at 491.504 kb on + strand, within purH at 491.505 kb on - strand, within purH at 491.505 kb on - strand, within purH at 491.581 kb on + strand, within purH at 491.622 kb on + strand, within purH at 491.622 kb on + strand, within purH at 491.623 kb on - strand, within purH at 491.623 kb on - strand, within purH at 491.643 kb on + strand, within purH at 491.643 kb on + strand, within purH at 491.643 kb on + strand, within purH at 491.643 kb on + strand, within purH at 491.669 kb on + strand, within purH at 491.669 kb on + strand, within purH at 491.838 kb on + strand, within purH at 491.882 kb on + strand, within purH at 491.882 kb on + strand, within purH at 491.882 kb on + strand, within purH at 491.883 kb on - strand, within purH at 491.883 kb on - strand, within purH at 491.894 kb on + strand, within purH at 491.894 kb on + strand, within purH at 491.894 kb on + strand, within purH at 491.895 kb on - strand, within purH at 492.020 kb on + strand, within purH at 492.089 kb on + strand, within purH at 492.089 kb on + strand, within purH at 492.090 kb on - strand, within purH at 492.090 kb on - strand, within purH at 492.090 kb on - strand, within purH at 492.090 kb on - strand, within purH at 492.090 kb on - strand, within purH
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 488,894 + Sama_0393 0.75 +0.5 488,894 + Sama_0393 0.75 +0.5 488,895 - Sama_0393 0.76 +1.0 488,895 - Sama_0393 0.76 +0.6 488,895 - Sama_0393 0.76 +0.2 488,932 + Sama_0393 0.77 -1.4 488,932 + Sama_0393 0.77 +0.8 488,932 + Sama_0393 0.77 -0.3 488,932 + Sama_0393 0.77 +0.9 488,932 + Sama_0393 0.77 -0.4 488,933 - Sama_0393 0.77 +1.8 488,933 - Sama_0393 0.77 +2.1 488,933 - Sama_0393 0.77 -0.5 488,933 - Sama_0393 0.77 +0.5 488,933 - Sama_0393 0.77 -1.5 488,997 + Sama_0393 0.79 +0.9 488,998 - Sama_0393 0.79 +0.6 489,131 - Sama_0393 0.83 -0.5 489,131 - Sama_0393 0.83 +0.4 489,131 - Sama_0393 0.83 +1.7 489,131 - Sama_0393 0.83 +0.6 489,215 + Sama_0393 0.85 -0.4 489,215 + Sama_0393 0.85 +0.3 489,216 - Sama_0393 0.85 -0.9 489,216 - Sama_0393 0.85 -0.3 489,216 - Sama_0393 0.85 -0.6 489,283 - Sama_0393 0.88 -0.4 489,283 - Sama_0393 0.88 +1.6 489,345 + Sama_0393 0.89 +2.1 489,345 + Sama_0393 0.89 -1.6 489,392 + +3.2 489,393 - +0.3 489,393 - -1.4 489,429 + +1.9 489,429 + +1.1 489,429 + -2.1 489,430 - -0.1 489,430 - +1.2 489,430 - -0.4 489,432 + -0.6 489,432 + -0.7 489,432 + +2.0 489,432 + -0.5 489,433 - +1.5 489,441 + +0.1 489,442 - +0.4 489,442 - -1.3 489,442 - -1.2 489,443 + +2.5 489,444 - +0.3 489,444 - +0.0 489,444 - +1.3 489,460 + -0.3 489,461 - -0.6 489,461 - +0.3 489,548 + -0.9 489,548 + -0.4 489,549 - +0.2 489,549 - +1.5 489,617 + +0.5 489,617 + +0.2 489,618 - +0.7 489,658 - -1.1 489,714 + +1.0 489,714 + -0.0 489,728 + -2.4 489,728 + -1.1 489,728 + -1.8 489,728 + +0.0 489,728 + -1.2 489,728 + -0.8 489,729 - -1.2 489,729 - -0.1 489,729 - -0.6 489,729 - +0.7 489,729 - -0.3 489,731 - +0.3 489,751 - -1.1 489,758 + +1.1 489,759 - +0.4 489,762 + -1.4 489,762 + -1.6 489,762 + -1.6 489,765 - +1.4 489,767 + -0.6 489,767 + +0.2 489,792 - +0.0 489,860 - -0.4 489,860 - -1.5 489,860 - +0.4 489,863 + -1.1 489,863 + -0.8 489,863 + -0.0 489,864 - +1.7 489,864 - -1.9 489,904 - -1.2 489,911 + -0.6 489,912 - -0.6 489,947 + -3.6 489,947 + -4.0 489,947 + -2.9 489,947 + -3.3 489,978 + -2.6 489,978 + -4.1 489,979 - -2.5 490,000 + Sama_0394 0.11 -2.6 490,000 + Sama_0394 0.11 -2.3 490,286 + Sama_0394 0.33 -1.9 490,287 - Sama_0394 0.33 -4.2 490,287 - Sama_0394 0.33 -1.5 490,287 - Sama_0394 0.33 -3.1 490,334 + Sama_0394 0.36 -3.6 490,334 + Sama_0394 0.36 -1.5 490,335 - Sama_0394 0.36 -2.2 490,335 - Sama_0394 0.36 -2.9 490,335 - Sama_0394 0.36 -1.8 490,335 - Sama_0394 0.36 -1.9 490,349 + Sama_0394 0.38 -1.6 490,349 + Sama_0394 0.38 -2.3 490,349 + Sama_0394 0.38 -2.8 490,349 + Sama_0394 0.38 -0.6 490,349 + Sama_0394 0.38 -3.2 490,350 - Sama_0394 0.38 -2.4 490,350 - Sama_0394 0.38 -2.3 490,392 + Sama_0394 0.41 -2.6 490,392 + Sama_0394 0.41 -1.5 490,393 - Sama_0394 0.41 -1.2 490,418 - Sama_0394 0.43 -0.8 490,418 - Sama_0394 0.43 -3.3 490,418 - Sama_0394 0.43 -1.9 490,418 - Sama_0394 0.43 -2.0 490,418 - Sama_0394 0.43 -1.8 490,448 + Sama_0394 0.45 -2.8 490,448 + Sama_0394 0.45 -1.2 490,448 + Sama_0394 0.45 -2.5 490,554 + Sama_0394 0.53 -1.0 490,588 + Sama_0394 0.56 -3.3 490,588 + Sama_0394 0.56 -1.6 490,588 + Sama_0394 0.56 -3.3 490,588 + Sama_0394 0.56 -1.9 490,589 - Sama_0394 0.56 -2.6 490,589 - Sama_0394 0.56 -2.1 490,589 - Sama_0394 0.56 -4.1 490,589 - Sama_0394 0.56 -3.3 490,591 + Sama_0394 0.56 -1.5 490,591 + Sama_0394 0.56 -3.8 490,591 + Sama_0394 0.56 -3.0 490,592 - Sama_0394 0.56 -2.8 490,592 - Sama_0394 0.56 -1.5 490,592 - Sama_0394 0.56 +0.9 490,635 + Sama_0394 0.60 -3.6 490,635 + Sama_0394 0.60 -4.0 490,635 + Sama_0394 0.60 -3.4 490,636 - Sama_0394 0.60 -1.8 490,678 - Sama_0394 0.63 -3.4 490,690 - Sama_0394 0.64 -3.3 490,875 + Sama_0394 0.78 -4.3 490,875 + Sama_0394 0.78 -3.3 490,875 + Sama_0394 0.78 -3.9 490,951 + Sama_0394 0.84 -2.0 490,951 + Sama_0394 0.84 -2.7 490,951 + Sama_0394 0.84 -4.5 490,951 + Sama_0394 0.84 -2.0 490,951 + Sama_0394 0.84 -3.8 490,951 + Sama_0394 0.84 -4.6 490,951 + Sama_0394 0.84 -0.4 490,951 + Sama_0394 0.84 -2.7 490,951 + Sama_0394 0.84 -0.1 490,951 + Sama_0394 0.84 -2.5 490,952 - Sama_0394 0.84 -1.1 490,952 - Sama_0394 0.84 -1.6 490,952 - Sama_0394 0.84 -1.9 490,952 - Sama_0394 0.84 -3.0 490,952 - Sama_0394 0.84 -4.2 490,952 - Sama_0394 0.84 -4.0 490,952 - Sama_0394 0.84 -2.5 490,952 - Sama_0394 0.84 -3.2 490,952 - Sama_0394 0.84 -1.2 490,952 - Sama_0394 0.84 -2.1 491,074 + -1.5 491,074 + -2.8 491,075 - -2.9 491,075 - -3.1 491,075 - -2.0 491,075 - -3.6 491,075 - +0.4 491,079 + -2.7 491,079 + -2.1 491,080 - -2.2 491,080 - -2.8 491,080 - -3.7 491,083 + -3.2 491,083 + -1.9 491,083 + -2.5 491,083 + -3.5 491,084 - -1.1 491,084 - -3.5 491,151 + -1.6 491,152 - -3.0 491,163 + -4.2 491,163 + -3.3 491,164 - +0.4 491,170 + -2.2 491,170 + -1.5 491,210 + -2.3 491,211 - -0.3 491,211 - -0.2 491,211 - -1.6 491,213 + +0.7 491,213 + -0.5 491,213 + -0.2 491,299 - -2.8 491,352 + -2.9 491,450 + purH Sama_0395 0.15 -2.9 491,482 + purH Sama_0395 0.17 -2.7 491,483 - purH Sama_0395 0.17 -4.1 491,483 - purH Sama_0395 0.17 -2.3 491,483 - purH Sama_0395 0.17 -3.7 491,483 - purH Sama_0395 0.17 -3.2 491,483 - purH Sama_0395 0.17 -3.5 491,483 - purH Sama_0395 0.17 -3.2 491,504 + purH Sama_0395 0.18 -3.0 491,504 + purH Sama_0395 0.18 -3.0 491,505 - purH Sama_0395 0.18 -4.1 491,505 - purH Sama_0395 0.18 -1.2 491,581 + purH Sama_0395 0.23 -4.8 491,622 + purH Sama_0395 0.26 -2.5 491,622 + purH Sama_0395 0.26 -3.7 491,623 - purH Sama_0395 0.26 -3.1 491,623 - purH Sama_0395 0.26 -4.4 491,643 + purH Sama_0395 0.27 -5.1 491,643 + purH Sama_0395 0.27 -3.3 491,643 + purH Sama_0395 0.27 -3.6 491,643 + purH Sama_0395 0.27 -1.9 491,669 + purH Sama_0395 0.29 -4.3 491,669 + purH Sama_0395 0.29 -3.5 491,838 + purH Sama_0395 0.39 -3.0 491,882 + purH Sama_0395 0.42 -4.3 491,882 + purH Sama_0395 0.42 -1.8 491,882 + purH Sama_0395 0.42 -4.5 491,883 - purH Sama_0395 0.42 +1.2 491,883 - purH Sama_0395 0.42 -1.9 491,894 + purH Sama_0395 0.43 -4.7 491,894 + purH Sama_0395 0.43 -1.1 491,894 + purH Sama_0395 0.43 -2.3 491,895 - purH Sama_0395 0.43 -1.8 492,020 + purH Sama_0395 0.51 -1.8 492,089 + purH Sama_0395 0.55 -3.6 492,089 + purH Sama_0395 0.55 -4.3 492,090 - purH Sama_0395 0.55 -2.1 492,090 - purH Sama_0395 0.55 -3.7 492,090 - purH Sama_0395 0.55 -1.7 492,090 - purH Sama_0395 0.55 -3.9 492,090 - purH Sama_0395 0.55 -0.4
Or see this region's nucleotide sequence