Strain Fitness in Shewanella amazonensis SB2B around Sama_0346

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0344 and Sama_0345 are separated by 354 nucleotidesSama_0345 and mraW are separated by 31 nucleotidesmraW and Sama_0347 are separated by 10 nucleotidesSama_0347 and Sama_0348 overlap by 4 nucleotides Sama_0344: Sama_0344 - PepSY-associated TM helix (RefSeq), at 413,375 to 414,091 _0344 Sama_0345: Sama_0345 - cell division protein MraZ (RefSeq), at 414,446 to 414,904 _0345 Sama_0346: mraW - S-adenosyl-methyltransferase MraW (RefSeq), at 414,936 to 415,877 mraW Sama_0347: Sama_0347 - cell division protein FtsL (RefSeq), at 415,888 to 416,199 _0347 Sama_0348: Sama_0348 - peptidoglycan glycosyltransferase (RefSeq), at 416,196 to 417,932 _0348 Position (kb) 414 415 416Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 413.942 kb on + strand, within Sama_0344at 413.942 kb on + strand, within Sama_0344at 413.942 kb on + strand, within Sama_0344at 413.943 kb on - strand, within Sama_0344at 413.974 kb on + strand, within Sama_0344at 413.974 kb on + strand, within Sama_0344at 413.974 kb on + strand, within Sama_0344at 413.975 kb on - strand, within Sama_0344at 413.975 kb on - strand, within Sama_0344at 413.975 kb on - strand, within Sama_0344at 413.981 kb on + strand, within Sama_0344at 413.981 kb on + strand, within Sama_0344at 413.982 kb on - strand, within Sama_0344at 413.982 kb on - strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.998 kb on + strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 413.999 kb on - strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.000 kb on + strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.001 kb on - strand, within Sama_0344at 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.032 kb on + strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.033 kb on - strandat 414.038 kb on + strandat 414.039 kb on - strandat 414.070 kb on + strandat 414.070 kb on + strandat 414.070 kb on + strandat 414.092 kb on + strandat 414.092 kb on + strandat 414.179 kb on - strandat 414.234 kb on + strandat 414.234 kb on + strandat 414.234 kb on + strandat 414.235 kb on - strandat 414.235 kb on - strandat 414.235 kb on - strandat 414.235 kb on - strandat 414.235 kb on - strandat 414.257 kb on + strandat 414.333 kb on + strandat 414.357 kb on + strandat 414.357 kb on + strandat 414.375 kb on + strandat 414.419 kb on + strandat 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.583 kb on + strand, within Sama_0345at 414.587 kb on + strand, within Sama_0345at 414.696 kb on + strand, within Sama_0345at 414.726 kb on + strand, within Sama_0345at 414.746 kb on + strand, within Sama_0345at 414.921 kb on + strandat 414.921 kb on + strandat 414.921 kb on + strandat 414.921 kb on + strandat 414.921 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strandat 414.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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413,942 + Sama_0344 0.79 -0.8
413,942 + Sama_0344 0.79 +0.3
413,942 + Sama_0344 0.79 -0.4
413,943 - Sama_0344 0.79 -1.5
413,974 + Sama_0344 0.84 +0.4
413,974 + Sama_0344 0.84 +0.6
413,974 + Sama_0344 0.84 +0.6
413,975 - Sama_0344 0.84 +1.5
413,975 - Sama_0344 0.84 -1.4
413,975 - Sama_0344 0.84 +0.1
413,981 + Sama_0344 0.85 -0.9
413,981 + Sama_0344 0.85 -0.5
413,982 - Sama_0344 0.85 +0.1
413,982 - Sama_0344 0.85 -1.0
413,998 + Sama_0344 0.87 +0.3
413,998 + Sama_0344 0.87 -1.3
413,998 + Sama_0344 0.87 -0.1
413,998 + Sama_0344 0.87 +1.4
413,998 + Sama_0344 0.87 +1.7
413,999 - Sama_0344 0.87 -0.6
413,999 - Sama_0344 0.87 -0.1
413,999 - Sama_0344 0.87 -0.4
413,999 - Sama_0344 0.87 +0.3
413,999 - Sama_0344 0.87 +1.1
413,999 - Sama_0344 0.87 +2.6
413,999 - Sama_0344 0.87 -1.1
414,000 + Sama_0344 0.87 +0.1
414,000 + Sama_0344 0.87 -1.0
414,000 + Sama_0344 0.87 -0.7
414,000 + Sama_0344 0.87 -1.1
414,000 + Sama_0344 0.87 -0.5
414,000 + Sama_0344 0.87 -2.1
414,000 + Sama_0344 0.87 -2.0
414,000 + Sama_0344 0.87 +2.0
414,000 + Sama_0344 0.87 -1.4
414,000 + Sama_0344 0.87 -0.4
414,000 + Sama_0344 0.87 +0.5
414,000 + Sama_0344 0.87 +0.3
414,000 + Sama_0344 0.87 +0.5
414,000 + Sama_0344 0.87 -2.0
414,001 - Sama_0344 0.87 -1.6
414,001 - Sama_0344 0.87 +0.4
414,001 - Sama_0344 0.87 -0.0
414,001 - Sama_0344 0.87 -0.6
414,001 - Sama_0344 0.87 -0.0
414,001 - Sama_0344 0.87 +0.1
414,001 - Sama_0344 0.87 +0.1
414,001 - Sama_0344 0.87 +0.0
414,001 - Sama_0344 0.87 -1.4
414,001 - Sama_0344 0.87 -1.0
414,001 - Sama_0344 0.87 +0.7
414,001 - Sama_0344 0.87 -2.5
414,001 - Sama_0344 0.87 -0.8
414,032 + +0.4
414,032 + -0.3
414,032 + -0.7
414,032 + -0.8
414,032 + -0.3
414,032 + -1.2
414,032 + -1.0
414,032 + -0.5
414,033 - -0.4
414,033 - +1.5
414,033 - -1.4
414,033 - -1.7
414,033 - -0.2
414,033 - +0.4
414,038 + +1.0
414,039 - +1.5
414,070 + +1.3
414,070 + -0.1
414,070 + -0.6
414,092 + +0.1
414,092 + +1.2
414,179 - -0.0
414,234 + -1.4
414,234 + +0.5
414,234 + -1.4
414,235 - -0.2
414,235 - -0.9
414,235 - +0.6
414,235 - -0.5
414,235 - +1.2
414,257 + -1.3
414,333 + -4.1
414,357 + -2.1
414,357 + -2.7
414,375 + -2.1
414,419 + -1.7
414,583 + Sama_0345 0.30 -2.9
414,583 + Sama_0345 0.30 +0.1
414,583 + Sama_0345 0.30 -3.1
414,583 + Sama_0345 0.30 -1.5
414,583 + Sama_0345 0.30 -1.7
414,583 + Sama_0345 0.30 -3.3
414,583 + Sama_0345 0.30 -1.0
414,583 + Sama_0345 0.30 -2.1
414,587 + Sama_0345 0.31 -1.0
414,696 + Sama_0345 0.54 -2.1
414,726 + Sama_0345 0.61 +0.6
414,746 + Sama_0345 0.65 -2.3
414,921 + -0.3
414,921 + -2.9
414,921 + -4.7
414,921 + -1.6
414,921 + -1.0
414,923 + -1.6
414,923 + +3.6
414,923 + -3.9
414,923 + +0.7
414,923 + -1.4
414,923 + +0.5
414,923 + +0.3
414,923 + +0.4
414,923 + +0.6
414,923 + -2.4
414,923 + -0.3
414,923 + -1.9
414,923 + -0.2

Or see this region's nucleotide sequence