Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4613 and ctaB are separated by 2 nucleotides ctaB and SO4615 are separated by 50 nucleotides SO4615 and SO4616 are separated by 44 nucleotides
SO4613: SO4613 - cytochrome oxidase assembly protein, putative (NCBI ptt file), at 4,807,062 to 4,808,054
SO4613
SO4614: ctaB - protoheme IX farnesyltransferase (NCBI ptt file), at 4,808,057 to 4,808,959
ctaB
SO4615: SO4615 - SCO1/SenC family protein (NCBI ptt file), at 4,809,010 to 4,809,651
SO4615
SO4616: SO4616 - polysaccharide deacetylase family protein (NCBI ptt file), at 4,809,696 to 4,810,742
SO4616
Position (kb) 4809
4810 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4808.056 kb on - strand at 4808.086 kb on + strand at 4808.086 kb on + strand at 4808.091 kb on + strand at 4808.094 kb on - strand at 4808.099 kb on - strand at 4808.130 kb on + strand at 4808.131 kb on + strand at 4808.138 kb on + strand at 4808.139 kb on - strand at 4808.139 kb on - strand at 4808.139 kb on - strand at 4808.153 kb on - strand, within ctaB at 4808.153 kb on - strand, within ctaB at 4808.153 kb on - strand, within ctaB at 4808.176 kb on + strand, within ctaB at 4808.233 kb on - strand, within ctaB at 4808.295 kb on + strand, within ctaB at 4808.372 kb on + strand, within ctaB at 4808.372 kb on + strand, within ctaB at 4808.372 kb on + strand, within ctaB at 4808.372 kb on + strand, within ctaB at 4808.372 kb on + strand, within ctaB at 4808.372 kb on + strand, within ctaB at 4808.372 kb on + strand, within ctaB at 4808.372 kb on + strand, within ctaB at 4808.380 kb on - strand, within ctaB at 4808.380 kb on - strand, within ctaB at 4808.380 kb on - strand, within ctaB at 4808.380 kb on - strand, within ctaB at 4808.380 kb on - strand, within ctaB at 4808.380 kb on - strand, within ctaB at 4808.380 kb on - strand, within ctaB at 4808.380 kb on - strand, within ctaB at 4808.382 kb on + strand, within ctaB at 4808.424 kb on + strand, within ctaB at 4808.424 kb on + strand, within ctaB at 4808.495 kb on + strand, within ctaB at 4808.495 kb on + strand, within ctaB at 4808.503 kb on - strand, within ctaB at 4808.503 kb on - strand, within ctaB at 4808.503 kb on - strand, within ctaB at 4808.562 kb on + strand, within ctaB at 4808.642 kb on + strand, within ctaB at 4808.700 kb on + strand, within ctaB at 4808.700 kb on + strand, within ctaB at 4808.700 kb on + strand, within ctaB at 4808.700 kb on + strand, within ctaB at 4808.708 kb on - strand, within ctaB at 4808.708 kb on - strand, within ctaB at 4808.708 kb on - strand, within ctaB at 4808.708 kb on - strand, within ctaB at 4808.754 kb on - strand, within ctaB at 4808.766 kb on - strand, within ctaB at 4808.803 kb on - strand, within ctaB at 4808.805 kb on + strand, within ctaB at 4808.805 kb on + strand, within ctaB at 4808.805 kb on + strand, within ctaB at 4808.805 kb on + strand, within ctaB at 4808.805 kb on + strand, within ctaB at 4808.805 kb on + strand, within ctaB at 4808.805 kb on + strand, within ctaB at 4808.805 kb on + strand, within ctaB at 4808.805 kb on + strand, within ctaB at 4808.813 kb on - strand, within ctaB at 4808.813 kb on - strand, within ctaB at 4808.813 kb on - strand, within ctaB at 4808.813 kb on - strand, within ctaB at 4808.813 kb on - strand, within ctaB at 4808.813 kb on - strand, within ctaB at 4808.813 kb on - strand, within ctaB at 4808.813 kb on - strand, within ctaB at 4808.940 kb on + strand at 4808.940 kb on + strand at 4809.001 kb on + strand at 4809.002 kb on - strand at 4809.096 kb on + strand, within SO4615 at 4809.096 kb on + strand, within SO4615 at 4809.096 kb on + strand, within SO4615 at 4809.096 kb on + strand, within SO4615 at 4809.096 kb on + strand, within SO4615 at 4809.104 kb on - strand, within SO4615 at 4809.129 kb on - strand, within SO4615 at 4809.208 kb on + strand, within SO4615 at 4809.216 kb on - strand, within SO4615 at 4809.233 kb on + strand, within SO4615 at 4809.233 kb on + strand, within SO4615 at 4809.241 kb on - strand, within SO4615 at 4809.265 kb on + strand, within SO4615 at 4809.266 kb on + strand, within SO4615 at 4809.375 kb on - strand, within SO4615 at 4809.407 kb on - strand, within SO4615 at 4809.408 kb on + strand, within SO4615 at 4809.449 kb on + strand, within SO4615 at 4809.457 kb on - strand, within SO4615 at 4809.457 kb on - strand, within SO4615 at 4809.461 kb on + strand, within SO4615 at 4809.514 kb on - strand, within SO4615 at 4809.517 kb on + strand, within SO4615 at 4809.520 kb on - strand, within SO4615 at 4809.601 kb on + strand at 4809.609 kb on - strand at 4809.609 kb on - strand at 4809.650 kb on + strand at 4809.653 kb on - strand at 4809.658 kb on - strand at 4809.704 kb on - strand at 4809.769 kb on + strand at 4809.769 kb on + strand at 4809.774 kb on + strand at 4809.777 kb on - strand at 4809.824 kb on - strand, within SO4616 at 4809.961 kb on + strand, within SO4616 at 4810.012 kb on - strand, within SO4616 at 4810.014 kb on + strand, within SO4616 at 4810.105 kb on + strand, within SO4616 at 4810.113 kb on + strand, within SO4616 at 4810.126 kb on - strand, within SO4616 at 4810.127 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.152 kb on + strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.160 kb on - strand, within SO4616 at 4810.191 kb on - strand, within SO4616 at 4810.277 kb on - strand, within SO4616 at 4810.326 kb on - strand, within SO4616 at 4810.369 kb on - strand, within SO4616 at 4810.378 kb on + strand, within SO4616 at 4810.431 kb on - strand, within SO4616 at 4810.478 kb on - strand, within SO4616 at 4810.493 kb on + strand, within SO4616 at 4810.574 kb on + strand, within SO4616 at 4810.574 kb on + strand, within SO4616 at 4810.582 kb on - strand, within SO4616 at 4810.582 kb on - strand, within SO4616 at 4810.622 kb on - strand, within SO4616 at 4810.632 kb on - strand, within SO4616
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,808,056 - +1.2 4,808,086 + +0.5 4,808,086 + +0.5 4,808,091 + -1.3 4,808,094 - +0.9 4,808,099 - +0.2 4,808,130 + -0.4 4,808,131 + +0.7 4,808,138 + -0.1 4,808,139 - -1.3 4,808,139 - +0.4 4,808,139 - +0.0 4,808,153 - ctaB SO4614 0.11 +0.1 4,808,153 - ctaB SO4614 0.11 +2.3 4,808,153 - ctaB SO4614 0.11 +0.7 4,808,176 + ctaB SO4614 0.13 -0.0 4,808,233 - ctaB SO4614 0.19 +0.2 4,808,295 + ctaB SO4614 0.26 +0.3 4,808,372 + ctaB SO4614 0.35 +0.9 4,808,372 + ctaB SO4614 0.35 +0.1 4,808,372 + ctaB SO4614 0.35 +1.3 4,808,372 + ctaB SO4614 0.35 +0.2 4,808,372 + ctaB SO4614 0.35 -0.6 4,808,372 + ctaB SO4614 0.35 -0.4 4,808,372 + ctaB SO4614 0.35 -0.3 4,808,372 + ctaB SO4614 0.35 +0.1 4,808,380 - ctaB SO4614 0.36 +0.6 4,808,380 - ctaB SO4614 0.36 +0.6 4,808,380 - ctaB SO4614 0.36 +0.2 4,808,380 - ctaB SO4614 0.36 +0.9 4,808,380 - ctaB SO4614 0.36 -1.0 4,808,380 - ctaB SO4614 0.36 -0.7 4,808,380 - ctaB SO4614 0.36 +0.3 4,808,380 - ctaB SO4614 0.36 +0.6 4,808,382 + ctaB SO4614 0.36 -0.8 4,808,424 + ctaB SO4614 0.41 +0.4 4,808,424 + ctaB SO4614 0.41 +0.4 4,808,495 + ctaB SO4614 0.49 +0.3 4,808,495 + ctaB SO4614 0.49 +0.7 4,808,503 - ctaB SO4614 0.49 -0.1 4,808,503 - ctaB SO4614 0.49 -0.8 4,808,503 - ctaB SO4614 0.49 +0.2 4,808,562 + ctaB SO4614 0.56 +0.8 4,808,642 + ctaB SO4614 0.65 +0.6 4,808,700 + ctaB SO4614 0.71 -0.3 4,808,700 + ctaB SO4614 0.71 +1.7 4,808,700 + ctaB SO4614 0.71 +0.7 4,808,700 + ctaB SO4614 0.71 +0.5 4,808,708 - ctaB SO4614 0.72 +0.1 4,808,708 - ctaB SO4614 0.72 +0.5 4,808,708 - ctaB SO4614 0.72 +0.4 4,808,708 - ctaB SO4614 0.72 -0.3 4,808,754 - ctaB SO4614 0.77 +1.1 4,808,766 - ctaB SO4614 0.79 -0.5 4,808,803 - ctaB SO4614 0.83 -0.8 4,808,805 + ctaB SO4614 0.83 -0.5 4,808,805 + ctaB SO4614 0.83 +0.2 4,808,805 + ctaB SO4614 0.83 +0.2 4,808,805 + ctaB SO4614 0.83 -0.1 4,808,805 + ctaB SO4614 0.83 +1.5 4,808,805 + ctaB SO4614 0.83 +0.6 4,808,805 + ctaB SO4614 0.83 +0.7 4,808,805 + ctaB SO4614 0.83 +1.0 4,808,805 + ctaB SO4614 0.83 -0.4 4,808,813 - ctaB SO4614 0.84 +0.4 4,808,813 - ctaB SO4614 0.84 +0.1 4,808,813 - ctaB SO4614 0.84 +0.3 4,808,813 - ctaB SO4614 0.84 -0.7 4,808,813 - ctaB SO4614 0.84 +0.4 4,808,813 - ctaB SO4614 0.84 +1.2 4,808,813 - ctaB SO4614 0.84 +0.0 4,808,813 - ctaB SO4614 0.84 +0.1 4,808,940 + +0.7 4,808,940 + +0.4 4,809,001 + +2.5 4,809,002 - +0.3 4,809,096 + SO4615 0.13 +0.3 4,809,096 + SO4615 0.13 +0.3 4,809,096 + SO4615 0.13 +0.2 4,809,096 + SO4615 0.13 +1.1 4,809,096 + SO4615 0.13 +0.7 4,809,104 - SO4615 0.15 -0.2 4,809,129 - SO4615 0.19 +1.5 4,809,208 + SO4615 0.31 +0.2 4,809,216 - SO4615 0.32 +0.5 4,809,233 + SO4615 0.35 +1.1 4,809,233 + SO4615 0.35 +1.3 4,809,241 - SO4615 0.36 +0.6 4,809,265 + SO4615 0.40 -0.3 4,809,266 + SO4615 0.40 +1.1 4,809,375 - SO4615 0.57 -0.1 4,809,407 - SO4615 0.62 +0.2 4,809,408 + SO4615 0.62 +0.9 4,809,449 + SO4615 0.68 +0.1 4,809,457 - SO4615 0.70 +0.6 4,809,457 - SO4615 0.70 -0.2 4,809,461 + SO4615 0.70 +0.5 4,809,514 - SO4615 0.79 -0.1 4,809,517 + SO4615 0.79 -0.6 4,809,520 - SO4615 0.79 -0.6 4,809,601 + +1.4 4,809,609 - +0.7 4,809,609 - -0.1 4,809,650 + -2.5 4,809,653 - -0.0 4,809,658 - +0.1 4,809,704 - +0.1 4,809,769 + -0.8 4,809,769 + -0.4 4,809,774 + -0.4 4,809,777 - +0.4 4,809,824 - SO4616 0.12 +0.3 4,809,961 + SO4616 0.25 -0.1 4,810,012 - SO4616 0.30 -0.2 4,810,014 + SO4616 0.30 +0.2 4,810,105 + SO4616 0.39 +0.0 4,810,113 + SO4616 0.40 -0.5 4,810,126 - SO4616 0.41 +0.2 4,810,127 + SO4616 0.41 -1.3 4,810,152 + SO4616 0.44 -0.9 4,810,152 + SO4616 0.44 -0.4 4,810,152 + SO4616 0.44 -0.0 4,810,152 + SO4616 0.44 +0.9 4,810,152 + SO4616 0.44 -0.3 4,810,160 - SO4616 0.44 +0.2 4,810,160 - SO4616 0.44 +0.4 4,810,160 - SO4616 0.44 +0.6 4,810,160 - SO4616 0.44 -1.1 4,810,160 - SO4616 0.44 -0.9 4,810,160 - SO4616 0.44 -0.4 4,810,160 - SO4616 0.44 +1.5 4,810,160 - SO4616 0.44 -0.4 4,810,191 - SO4616 0.47 +0.1 4,810,277 - SO4616 0.55 -0.4 4,810,326 - SO4616 0.60 +0.2 4,810,369 - SO4616 0.64 +0.0 4,810,378 + SO4616 0.65 +0.2 4,810,431 - SO4616 0.70 -1.3 4,810,478 - SO4616 0.75 -0.3 4,810,493 + SO4616 0.76 -1.4 4,810,574 + SO4616 0.84 -0.3 4,810,574 + SO4616 0.84 +0.6 4,810,582 - SO4616 0.85 -0.5 4,810,582 - SO4616 0.85 +0.3 4,810,622 - SO4616 0.88 -1.0 4,810,632 - SO4616 0.89 -0.7
Or see this region's nucleotide sequence