Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0501 and SO0502 are separated by 275 nucleotides SO0502 and SO0503 are separated by 200 nucleotides
SO0501: SO0501 - conserved hypothetical protein (NCBI ptt file), at 528,063 to 528,719
SO0501
SO0502: SO0502 - transcriptional regulator, ArsR family (NCBI ptt file), at 528,995 to 529,330
SO0502
SO0503: SO0503 - conserved hypothetical protein (NCBI ptt file), at 529,531 to 530,607
SO0503
Position (kb) 528
529 Strain fitness (log2 ratio) -2
-1
0
1
2 at 527.066 kb on - strand at 527.068 kb on - strand at 527.118 kb on + strand at 527.118 kb on + strand at 527.126 kb on - strand at 527.126 kb on - strand at 527.126 kb on - strand at 527.126 kb on - strand at 527.211 kb on - strand at 527.238 kb on - strand at 527.274 kb on + strand at 527.293 kb on + strand at 527.293 kb on + strand at 527.417 kb on + strand at 527.448 kb on + strand at 527.456 kb on - strand at 527.518 kb on + strand at 527.604 kb on - strand at 527.609 kb on + strand at 527.630 kb on - strand at 527.636 kb on + strand at 527.665 kb on + strand at 527.670 kb on + strand at 527.670 kb on + strand at 527.670 kb on + strand at 527.678 kb on - strand at 527.678 kb on - strand at 527.678 kb on - strand at 527.709 kb on + strand at 527.900 kb on - strand at 527.951 kb on - strand at 527.953 kb on + strand at 527.953 kb on + strand at 527.961 kb on - strand at 527.978 kb on - strand at 528.012 kb on - strand at 528.049 kb on + strand at 528.147 kb on - strand, within SO0501 at 528.162 kb on - strand, within SO0501 at 528.222 kb on - strand, within SO0501 at 528.234 kb on + strand, within SO0501 at 528.242 kb on - strand, within SO0501 at 528.247 kb on - strand, within SO0501 at 528.247 kb on - strand, within SO0501 at 528.301 kb on + strand, within SO0501 at 528.301 kb on + strand, within SO0501 at 528.311 kb on + strand, within SO0501 at 528.319 kb on - strand, within SO0501 at 528.326 kb on + strand, within SO0501 at 528.399 kb on - strand, within SO0501 at 528.511 kb on + strand, within SO0501 at 528.519 kb on - strand, within SO0501 at 528.587 kb on + strand, within SO0501 at 528.787 kb on - strand at 528.802 kb on + strand at 528.813 kb on - strand at 528.818 kb on + strand at 528.833 kb on + strand at 528.833 kb on + strand at 528.833 kb on + strand at 528.833 kb on + strand at 528.834 kb on - strand at 528.867 kb on - strand at 528.959 kb on + strand at 528.974 kb on + strand at 528.974 kb on + strand at 528.974 kb on + strand at 528.974 kb on + strand at 528.982 kb on - strand at 528.982 kb on - strand at 528.982 kb on - strand at 528.983 kb on - strand at 528.993 kb on - strand at 529.024 kb on + strand at 529.037 kb on - strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.091 kb on + strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.099 kb on - strand, within SO0502 at 529.178 kb on + strand, within SO0502 at 529.236 kb on + strand, within SO0502 at 529.244 kb on - strand, within SO0502 at 529.246 kb on + strand, within SO0502 at 529.535 kb on + strand at 529.535 kb on + strand at 529.543 kb on - strand at 529.639 kb on + strand, within SO0503 at 529.647 kb on - strand, within SO0503 at 529.649 kb on + strand, within SO0503 at 529.679 kb on - strand, within SO0503 at 529.719 kb on + strand, within SO0503
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 527,066 - -2.0 527,068 - +1.1 527,118 + -0.6 527,118 + +1.3 527,126 - -0.4 527,126 - +0.8 527,126 - +0.2 527,126 - -0.3 527,211 - -0.8 527,238 - +0.0 527,274 + +0.4 527,293 + +2.2 527,293 + -0.4 527,417 + -0.3 527,448 + -0.7 527,456 - +0.4 527,518 + +1.0 527,604 - -0.4 527,609 + +1.2 527,630 - -0.7 527,636 + -0.4 527,665 + -0.2 527,670 + -1.0 527,670 + -1.7 527,670 + +0.3 527,678 - -0.0 527,678 - -0.4 527,678 - +0.4 527,709 + -1.5 527,900 - +1.4 527,951 - +0.2 527,953 + +1.0 527,953 + +0.7 527,961 - -0.1 527,978 - +0.1 528,012 - -0.2 528,049 + -0.1 528,147 - SO0501 0.13 -1.2 528,162 - SO0501 0.15 +0.8 528,222 - SO0501 0.24 -0.0 528,234 + SO0501 0.26 -0.5 528,242 - SO0501 0.27 +1.6 528,247 - SO0501 0.28 +0.0 528,247 - SO0501 0.28 -0.3 528,301 + SO0501 0.36 +0.9 528,301 + SO0501 0.36 -1.4 528,311 + SO0501 0.38 -0.2 528,319 - SO0501 0.39 +0.3 528,326 + SO0501 0.40 +0.2 528,399 - SO0501 0.51 -1.2 528,511 + SO0501 0.68 +0.3 528,519 - SO0501 0.69 +1.3 528,587 + SO0501 0.80 +1.5 528,787 - -1.0 528,802 + -0.2 528,813 - -0.2 528,818 + -0.4 528,833 + +1.2 528,833 + -0.5 528,833 + -0.1 528,833 + +0.3 528,834 - +0.6 528,867 - -0.4 528,959 + -0.3 528,974 + +0.4 528,974 + +0.6 528,974 + +2.3 528,974 + -0.0 528,982 - -0.2 528,982 - -1.7 528,982 - -0.5 528,983 - +0.0 528,993 - -0.2 529,024 + +0.9 529,037 - SO0502 0.12 -0.2 529,091 + SO0502 0.29 -0.6 529,091 + SO0502 0.29 -1.2 529,091 + SO0502 0.29 -0.4 529,091 + SO0502 0.29 -1.1 529,091 + SO0502 0.29 -1.9 529,099 - SO0502 0.31 -1.5 529,099 - SO0502 0.31 -0.6 529,099 - SO0502 0.31 -0.6 529,099 - SO0502 0.31 -2.7 529,099 - SO0502 0.31 -1.6 529,099 - SO0502 0.31 -2.7 529,178 + SO0502 0.54 -0.6 529,236 + SO0502 0.72 +0.1 529,244 - SO0502 0.74 +0.0 529,246 + SO0502 0.75 -0.5 529,535 + -0.7 529,535 + -0.2 529,543 - -0.4 529,639 + SO0503 0.10 -0.3 529,647 - SO0503 0.11 +0.3 529,649 + SO0503 0.11 -0.7 529,679 - SO0503 0.14 +1.6 529,719 + SO0503 0.17 -0.1
Or see this region's nucleotide sequence