Strain Fitness in Shewanella oneidensis MR-1 around SO0318

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0316 and SO0317 are separated by 17 nucleotidesSO0317 and SO0318 are separated by 31 nucleotidesSO0318 and SO0319 are separated by 235 nucleotides SO0316: SO0316 - hypothetical phosphatidylethanolamine-binding protein (NCBI ptt file), at 323,353 to 323,832 SO0316 SO0317: SO0317 - transcriptional regulator, AraC/XylS family (NCBI ptt file), at 323,850 to 324,608 SO0317 SO0318: SO0318 - conserved hypothetical protein (NCBI ptt file), at 324,640 to 324,990 SO0318 SO0319: SO0319 - conserved domain protein (NCBI ptt file), at 325,226 to 326,563 SO0319 Position (kb) 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 323.690 kb on + strand, within SO0316at 323.717 kb on + strand, within SO0316at 323.747 kb on + strand, within SO0316at 323.756 kb on + strand, within SO0316at 323.766 kb on + strand, within SO0316at 323.790 kb on + strandat 323.791 kb on + strandat 323.791 kb on + strandat 323.799 kb on - strandat 323.799 kb on - strandat 323.801 kb on + strandat 323.801 kb on + strandat 323.801 kb on + strandat 323.809 kb on - strandat 323.818 kb on + strandat 323.826 kb on - strandat 323.853 kb on - strandat 323.933 kb on + strand, within SO0317at 323.940 kb on + strand, within SO0317at 323.978 kb on + strand, within SO0317at 323.978 kb on + strand, within SO0317at 324.072 kb on + strand, within SO0317at 324.078 kb on + strand, within SO0317at 324.128 kb on + strand, within SO0317at 324.128 kb on + strand, within SO0317at 324.128 kb on + strand, within SO0317at 324.128 kb on + strand, within SO0317at 324.128 kb on + strand, within SO0317at 324.135 kb on - strand, within SO0317at 324.136 kb on - strand, within SO0317at 324.136 kb on - strand, within SO0317at 324.157 kb on + strand, within SO0317at 324.189 kb on + strand, within SO0317at 324.198 kb on - strand, within SO0317at 324.266 kb on - strand, within SO0317at 324.286 kb on + strand, within SO0317at 324.286 kb on + strand, within SO0317at 324.391 kb on + strand, within SO0317at 324.399 kb on - strand, within SO0317at 324.403 kb on + strand, within SO0317at 324.404 kb on - strand, within SO0317at 324.430 kb on + strand, within SO0317at 324.438 kb on - strand, within SO0317at 324.438 kb on - strand, within SO0317at 324.455 kb on + strand, within SO0317at 324.469 kb on + strand, within SO0317at 324.470 kb on - strand, within SO0317at 324.476 kb on - strand, within SO0317at 324.518 kb on + strand, within SO0317at 324.518 kb on + strand, within SO0317at 324.518 kb on + strand, within SO0317at 324.526 kb on - strand, within SO0317at 324.526 kb on - strand, within SO0317at 324.526 kb on - strand, within SO0317at 324.603 kb on - strandat 324.706 kb on + strand, within SO0318at 324.773 kb on + strand, within SO0318at 324.809 kb on - strand, within SO0318at 324.865 kb on + strand, within SO0318at 324.894 kb on - strand, within SO0318at 324.894 kb on - strand, within SO0318at 324.894 kb on - strand, within SO0318at 324.899 kb on - strand, within SO0318at 324.903 kb on + strand, within SO0318at 324.944 kb on + strand, within SO0318at 324.949 kb on + strand, within SO0318at 325.059 kb on - strandat 325.105 kb on - strandat 325.110 kb on + strandat 325.141 kb on + strandat 325.198 kb on - strandat 325.200 kb on + strandat 325.208 kb on - strandat 325.221 kb on + strandat 325.263 kb on + strandat 325.308 kb on - strandat 325.332 kb on + strandat 325.410 kb on - strand, within SO0319at 325.420 kb on - strand, within SO0319at 325.420 kb on - strand, within SO0319at 325.420 kb on - strand, within SO0319at 325.422 kb on + strand, within SO0319at 325.434 kb on + strand, within SO0319at 325.442 kb on - strand, within SO0319at 325.646 kb on + strand, within SO0319at 325.646 kb on + strand, within SO0319at 325.659 kb on - strand, within SO0319at 325.754 kb on - strand, within SO0319at 325.829 kb on + strand, within SO0319at 325.847 kb on - strand, within SO0319at 325.904 kb on - strand, within SO0319at 325.916 kb on + strand, within SO0319at 325.981 kb on - strand, within SO0319

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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323,690 + SO0316 0.70 +0.4
323,717 + SO0316 0.76 +0.0
323,747 + SO0316 0.82 -0.4
323,756 + SO0316 0.84 +0.7
323,766 + SO0316 0.86 -0.9
323,790 + +0.4
323,791 + +2.4
323,791 + +0.3
323,799 - -0.7
323,799 - -1.4
323,801 + -0.4
323,801 + +1.1
323,801 + -0.0
323,809 - +0.8
323,818 + -0.6
323,826 - -1.1
323,853 - +0.1
323,933 + SO0317 0.11 -0.4
323,940 + SO0317 0.12 -0.7
323,978 + SO0317 0.17 +0.4
323,978 + SO0317 0.17 -0.8
324,072 + SO0317 0.29 -1.5
324,078 + SO0317 0.30 -0.4
324,128 + SO0317 0.37 +0.8
324,128 + SO0317 0.37 +1.6
324,128 + SO0317 0.37 +1.3
324,128 + SO0317 0.37 -0.1
324,128 + SO0317 0.37 -0.1
324,135 - SO0317 0.38 +0.6
324,136 - SO0317 0.38 -0.3
324,136 - SO0317 0.38 +0.2
324,157 + SO0317 0.40 -0.7
324,189 + SO0317 0.45 -0.7
324,198 - SO0317 0.46 +0.2
324,266 - SO0317 0.55 +0.1
324,286 + SO0317 0.57 -0.3
324,286 + SO0317 0.57 +1.3
324,391 + SO0317 0.71 -0.1
324,399 - SO0317 0.72 -0.2
324,403 + SO0317 0.73 -0.1
324,404 - SO0317 0.73 +0.1
324,430 + SO0317 0.76 +0.2
324,438 - SO0317 0.77 -0.7
324,438 - SO0317 0.77 +0.3
324,455 + SO0317 0.80 -0.0
324,469 + SO0317 0.82 +0.6
324,470 - SO0317 0.82 +0.3
324,476 - SO0317 0.82 +0.6
324,518 + SO0317 0.88 -0.9
324,518 + SO0317 0.88 +1.0
324,518 + SO0317 0.88 -0.1
324,526 - SO0317 0.89 +1.3
324,526 - SO0317 0.89 -0.1
324,526 - SO0317 0.89 +0.2
324,603 - +0.0
324,706 + SO0318 0.19 -0.2
324,773 + SO0318 0.38 -1.0
324,809 - SO0318 0.48 -0.2
324,865 + SO0318 0.64 +0.8
324,894 - SO0318 0.72 +1.2
324,894 - SO0318 0.72 +0.0
324,894 - SO0318 0.72 +0.5
324,899 - SO0318 0.74 +0.8
324,903 + SO0318 0.75 -0.9
324,944 + SO0318 0.87 +0.4
324,949 + SO0318 0.88 -0.1
325,059 - +0.5
325,105 - +0.1
325,110 + -2.1
325,141 + +0.5
325,198 - -1.8
325,200 + +1.7
325,208 - +0.0
325,221 + +0.3
325,263 + +0.8
325,308 - +0.3
325,332 + +0.5
325,410 - SO0319 0.14 +0.1
325,420 - SO0319 0.14 +0.4
325,420 - SO0319 0.14 +0.4
325,420 - SO0319 0.14 +0.3
325,422 + SO0319 0.15 +1.2
325,434 + SO0319 0.16 +0.7
325,442 - SO0319 0.16 -0.1
325,646 + SO0319 0.31 +0.7
325,646 + SO0319 0.31 -0.2
325,659 - SO0319 0.32 +0.2
325,754 - SO0319 0.39 +1.2
325,829 + SO0319 0.45 +0.7
325,847 - SO0319 0.46 +0.3
325,904 - SO0319 0.51 +0.8
325,916 + SO0319 0.52 -0.3
325,981 - SO0319 0.56 +0.9

Or see this region's nucleotide sequence