Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gspK and gspL are separated by 48 nucleotides gspL and gspM are separated by 1 nucleotides gspM and gspN are separated by 14 nucleotides
SO0173: gspK - general secretion pathway protein K (NCBI ptt file), at 179,387 to 180,385
gspK
SO0174: gspL - general secretion pathway protein L (NCBI ptt file), at 180,434 to 181,621
gspL
SO0175: gspM - general secretion pathway protein M (NCBI ptt file), at 181,623 to 182,099
gspM
SO0176: gspN - general secretion pathway protein N (NCBI ptt file), at 182,114 to 182,875
gspN
Position (kb) 180
181
182 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 179.436 kb on - strand at 179.544 kb on - strand, within gspK at 179.635 kb on + strand, within gspK at 179.645 kb on + strand, within gspK at 179.785 kb on + strand, within gspK at 179.849 kb on - strand, within gspK at 179.892 kb on + strand, within gspK at 180.055 kb on + strand, within gspK at 180.102 kb on - strand, within gspK at 180.209 kb on - strand, within gspK at 180.410 kb on + strand at 180.418 kb on - strand at 180.424 kb on + strand at 180.476 kb on - strand at 180.493 kb on + strand at 180.538 kb on + strand at 180.546 kb on - strand at 180.546 kb on - strand at 180.569 kb on - strand, within gspL at 180.569 kb on - strand, within gspL at 180.569 kb on - strand, within gspL at 180.628 kb on - strand, within gspL at 180.628 kb on - strand, within gspL at 180.697 kb on - strand, within gspL at 180.910 kb on - strand, within gspL at 180.920 kb on + strand, within gspL at 180.932 kb on + strand, within gspL at 181.035 kb on + strand, within gspL at 181.078 kb on - strand, within gspL at 181.147 kb on - strand, within gspL at 181.225 kb on - strand, within gspL at 181.281 kb on - strand, within gspL at 181.311 kb on - strand, within gspL at 181.364 kb on + strand, within gspL at 181.364 kb on + strand, within gspL at 181.372 kb on - strand, within gspL at 181.372 kb on - strand, within gspL at 181.404 kb on - strand, within gspL at 181.416 kb on + strand, within gspL at 181.591 kb on - strand at 181.604 kb on + strand at 181.612 kb on - strand at 181.651 kb on + strand at 181.659 kb on - strand at 181.659 kb on - strand at 181.659 kb on - strand at 181.734 kb on + strand, within gspM at 181.754 kb on - strand, within gspM at 181.798 kb on + strand, within gspM at 181.881 kb on - strand, within gspM at 182.067 kb on + strand at 182.081 kb on + strand at 182.104 kb on + strand at 182.149 kb on + strand at 182.149 kb on + strand at 182.152 kb on - strand at 182.171 kb on + strand at 182.229 kb on + strand, within gspN at 182.319 kb on + strand, within gspN at 182.404 kb on - strand, within gspN at 182.420 kb on + strand, within gspN at 182.425 kb on - strand, within gspN at 182.548 kb on + strand, within gspN
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 179,436 - +5.0 179,544 - gspK SO0173 0.16 +5.0 179,635 + gspK SO0173 0.25 +4.8 179,645 + gspK SO0173 0.26 +4.8 179,785 + gspK SO0173 0.40 +4.0 179,849 - gspK SO0173 0.46 +4.4 179,892 + gspK SO0173 0.51 +4.6 180,055 + gspK SO0173 0.67 +4.7 180,102 - gspK SO0173 0.72 +5.8 180,209 - gspK SO0173 0.82 +5.1 180,410 + -0.0 180,418 - +6.0 180,424 + -0.6 180,476 - +5.1 180,493 + +4.5 180,538 + +4.7 180,546 - +4.1 180,546 - +4.5 180,569 - gspL SO0174 0.11 +4.8 180,569 - gspL SO0174 0.11 +6.2 180,569 - gspL SO0174 0.11 +5.6 180,628 - gspL SO0174 0.16 +7.2 180,628 - gspL SO0174 0.16 +5.4 180,697 - gspL SO0174 0.22 +5.4 180,910 - gspL SO0174 0.40 +5.0 180,920 + gspL SO0174 0.41 +5.9 180,932 + gspL SO0174 0.42 +5.0 181,035 + gspL SO0174 0.51 +5.6 181,078 - gspL SO0174 0.54 +5.6 181,147 - gspL SO0174 0.60 +4.6 181,225 - gspL SO0174 0.67 +5.1 181,281 - gspL SO0174 0.71 +4.8 181,311 - gspL SO0174 0.74 +3.8 181,364 + gspL SO0174 0.78 +3.7 181,364 + gspL SO0174 0.78 +4.3 181,372 - gspL SO0174 0.79 +4.2 181,372 - gspL SO0174 0.79 +5.2 181,404 - gspL SO0174 0.82 +5.2 181,416 + gspL SO0174 0.83 +5.0 181,591 - +4.9 181,604 + +0.5 181,612 - +4.7 181,651 + +5.0 181,659 - +4.7 181,659 - +4.2 181,659 - +5.1 181,734 + gspM SO0175 0.23 +4.7 181,754 - gspM SO0175 0.27 +4.3 181,798 + gspM SO0175 0.37 +3.9 181,881 - gspM SO0175 0.54 +5.3 182,067 + +0.5 182,081 + +0.7 182,104 + +0.5 182,149 + +1.5 182,149 + +2.6 182,152 - +1.3 182,171 + +2.7 182,229 + gspN SO0176 0.15 +1.7 182,319 + gspN SO0176 0.27 +1.4 182,404 - gspN SO0176 0.38 +1.4 182,420 + gspN SO0176 0.40 +0.5 182,425 - gspN SO0176 0.41 +1.3 182,548 + gspN SO0176 0.57 +1.5
Or see this region's nucleotide sequence