Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09220 and PGA1_c09230 are separated by 238 nucleotides PGA1_c09230 and PGA1_c09240 overlap by 4 nucleotides PGA1_c09240 and PGA1_c09250 are separated by 34 nucleotides PGA1_c09250 and PGA1_c09260 are separated by 225 nucleotides
PGA1_c09220: PGA1_c09220 - Predicted CoA-binding protein, at 946,196 to 946,666
_c09220
PGA1_c09230: PGA1_c09230 - phosphoribosyl-ATP pyrophosphatase HisE, at 946,905 to 947,222
_c09230
PGA1_c09240: PGA1_c09240 - imidazole glycerol phosphate synthase subunit HisF, at 947,219 to 947,980
_c09240
PGA1_c09250: PGA1_c09250 - Protein of unknown function (DUF2867)., at 948,015 to 948,497
_c09250
PGA1_c09260: PGA1_c09260 - Uncharacterized conserved protein, at 948,723 to 949,169
_c09260
Position (kb) 947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 946.266 kb on - strand, within PGA1_c09220 at 946.269 kb on + strand, within PGA1_c09220 at 946.329 kb on - strand, within PGA1_c09220 at 946.371 kb on - strand, within PGA1_c09220 at 946.382 kb on + strand, within PGA1_c09220 at 946.451 kb on - strand, within PGA1_c09220 at 946.483 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.528 kb on + strand, within PGA1_c09220 at 946.546 kb on + strand, within PGA1_c09220 at 946.567 kb on - strand, within PGA1_c09220 at 946.616 kb on + strand, within PGA1_c09220 at 946.878 kb on + strand at 948.010 kb on + strand at 948.020 kb on - strand at 948.054 kb on - strand at 948.054 kb on - strand at 948.093 kb on - strand, within PGA1_c09250 at 948.115 kb on + strand, within PGA1_c09250 at 948.160 kb on + strand, within PGA1_c09250 at 948.227 kb on + strand, within PGA1_c09250 at 948.235 kb on - strand, within PGA1_c09250 at 948.235 kb on - strand, within PGA1_c09250 at 948.245 kb on + strand, within PGA1_c09250 at 948.245 kb on + strand, within PGA1_c09250 at 948.252 kb on + strand, within PGA1_c09250 at 948.252 kb on + strand, within PGA1_c09250 at 948.253 kb on - strand, within PGA1_c09250 at 948.344 kb on - strand, within PGA1_c09250 at 948.436 kb on + strand, within PGA1_c09250 at 948.510 kb on + strand at 948.516 kb on - strand at 948.523 kb on - strand at 948.532 kb on + strand at 948.532 kb on + strand at 948.540 kb on - strand at 948.551 kb on - strand at 948.593 kb on + strand at 948.616 kb on + strand at 948.618 kb on - strand at 948.618 kb on - strand at 948.624 kb on - strand at 948.635 kb on + strand at 948.662 kb on + strand at 948.669 kb on + strand at 948.669 kb on + strand at 948.669 kb on + strand at 948.669 kb on + strand at 948.674 kb on + strand at 948.674 kb on + strand at 948.674 kb on + strand at 948.674 kb on + strand at 948.677 kb on - strand at 948.677 kb on - strand at 948.677 kb on - strand at 948.677 kb on - strand at 948.679 kb on + strand at 948.679 kb on + strand at 948.682 kb on - strand at 948.682 kb on - strand at 948.682 kb on - strand at 948.707 kb on + strand at 948.759 kb on + strand at 948.781 kb on + strand, within PGA1_c09260 at 948.781 kb on + strand, within PGA1_c09260 at 948.845 kb on - strand, within PGA1_c09260 at 948.870 kb on + strand, within PGA1_c09260 at 948.870 kb on + strand, within PGA1_c09260 at 948.975 kb on - strand, within PGA1_c09260 at 948.975 kb on - strand, within PGA1_c09260
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 946,266 - PGA1_c09220 0.15 -0.8 946,269 + PGA1_c09220 0.15 +0.2 946,329 - PGA1_c09220 0.28 +0.6 946,371 - PGA1_c09220 0.37 -0.5 946,382 + PGA1_c09220 0.39 -0.4 946,451 - PGA1_c09220 0.54 +0.1 946,483 + PGA1_c09220 0.61 +0.3 946,518 + PGA1_c09220 0.68 -1.2 946,518 + PGA1_c09220 0.68 -0.9 946,518 + PGA1_c09220 0.68 -3.0 946,528 + PGA1_c09220 0.70 -3.2 946,546 + PGA1_c09220 0.74 -1.7 946,567 - PGA1_c09220 0.79 -1.4 946,616 + PGA1_c09220 0.89 -2.7 946,878 + -1.9 948,010 + -1.5 948,020 - -1.9 948,054 - +0.1 948,054 - -0.1 948,093 - PGA1_c09250 0.16 -0.2 948,115 + PGA1_c09250 0.21 -1.0 948,160 + PGA1_c09250 0.30 -0.7 948,227 + PGA1_c09250 0.44 -1.2 948,235 - PGA1_c09250 0.46 +0.4 948,235 - PGA1_c09250 0.46 -0.7 948,245 + PGA1_c09250 0.48 +0.3 948,245 + PGA1_c09250 0.48 -0.5 948,252 + PGA1_c09250 0.49 -2.8 948,252 + PGA1_c09250 0.49 -2.2 948,253 - PGA1_c09250 0.49 -1.3 948,344 - PGA1_c09250 0.68 -0.6 948,436 + PGA1_c09250 0.87 -1.8 948,510 + +0.5 948,516 - +0.2 948,523 - -1.3 948,532 + -1.1 948,532 + +0.0 948,540 - +1.4 948,551 - -3.5 948,593 + +0.8 948,616 + -0.0 948,618 - +1.1 948,618 - -0.5 948,624 - -1.1 948,635 + +0.5 948,662 + +0.3 948,669 + -0.5 948,669 + +0.5 948,669 + -1.6 948,669 + -2.1 948,674 + +1.1 948,674 + -2.2 948,674 + +0.0 948,674 + -0.4 948,677 - +0.4 948,677 - +0.7 948,677 - -0.2 948,677 - +0.3 948,679 + -0.7 948,679 + +0.4 948,682 - +1.5 948,682 - -2.2 948,682 - +1.2 948,707 + -0.9 948,759 + -1.2 948,781 + PGA1_c09260 0.13 -0.8 948,781 + PGA1_c09260 0.13 +1.3 948,845 - PGA1_c09260 0.27 -2.2 948,870 + PGA1_c09260 0.33 -0.6 948,870 + PGA1_c09260 0.33 +1.5 948,975 - PGA1_c09260 0.56 +0.5 948,975 - PGA1_c09260 0.56 -0.1
Or see this region's nucleotide sequence