Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07210

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07200 and PGA1_c07210 are separated by 12 nucleotidesPGA1_c07210 and PGA1_c07220 overlap by 7 nucleotidesPGA1_c07220 and PGA1_c07230 overlap by 4 nucleotides PGA1_c07200: PGA1_c07200 - phytanoyl-CoA dioxygenase-like protein, at 740,406 to 741,590 _c07200 PGA1_c07210: PGA1_c07210 - inositol 2-dehydrogenase IdhA, at 741,603 to 742,589 _c07210 PGA1_c07220: PGA1_c07220 - 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) (from data), at 742,583 to 743,422 _c07220 PGA1_c07230: PGA1_c07230 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data), at 743,419 to 744,276 _c07230 Position (kb) 741 742 743Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 740.638 kb on + strand, within PGA1_c07200at 740.724 kb on + strand, within PGA1_c07200at 740.726 kb on + strand, within PGA1_c07200at 740.732 kb on - strand, within PGA1_c07200at 740.739 kb on + strand, within PGA1_c07200at 740.773 kb on + strand, within PGA1_c07200at 740.810 kb on + strand, within PGA1_c07200at 740.810 kb on + strand, within PGA1_c07200at 740.818 kb on - strand, within PGA1_c07200at 740.829 kb on - strand, within PGA1_c07200at 740.894 kb on - strand, within PGA1_c07200at 740.912 kb on + strand, within PGA1_c07200at 741.030 kb on + strand, within PGA1_c07200at 741.038 kb on - strand, within PGA1_c07200at 741.089 kb on - strand, within PGA1_c07200at 741.089 kb on - strand, within PGA1_c07200at 741.118 kb on - strand, within PGA1_c07200at 741.124 kb on + strand, within PGA1_c07200at 741.132 kb on + strand, within PGA1_c07200at 741.132 kb on + strand, within PGA1_c07200at 741.132 kb on + strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.140 kb on - strand, within PGA1_c07200at 741.149 kb on + strand, within PGA1_c07200at 741.180 kb on + strand, within PGA1_c07200at 741.180 kb on + strand, within PGA1_c07200at 741.180 kb on + strand, within PGA1_c07200at 741.258 kb on - strand, within PGA1_c07200at 741.269 kb on - strand, within PGA1_c07200at 741.297 kb on + strand, within PGA1_c07200at 741.297 kb on + strand, within PGA1_c07200at 741.305 kb on - strand, within PGA1_c07200at 741.315 kb on - strand, within PGA1_c07200at 741.374 kb on + strand, within PGA1_c07200at 741.407 kb on - strand, within PGA1_c07200at 741.432 kb on - strand, within PGA1_c07200at 741.478 kb on + strandat 741.497 kb on + strandat 741.510 kb on + strandat 741.522 kb on + strandat 741.610 kb on - strandat 741.799 kb on + strand, within PGA1_c07210at 741.823 kb on - strand, within PGA1_c07210at 741.849 kb on + strand, within PGA1_c07210at 741.857 kb on + strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.865 kb on - strand, within PGA1_c07210at 741.901 kb on - strand, within PGA1_c07210at 741.948 kb on - strand, within PGA1_c07210at 741.961 kb on + strand, within PGA1_c07210at 741.994 kb on + strand, within PGA1_c07210at 742.114 kb on + strand, within PGA1_c07210at 742.124 kb on + strand, within PGA1_c07210at 742.127 kb on + strand, within PGA1_c07210at 742.173 kb on + strand, within PGA1_c07210at 742.230 kb on + strand, within PGA1_c07210at 742.230 kb on + strand, within PGA1_c07210at 742.238 kb on - strand, within PGA1_c07210at 742.252 kb on + strand, within PGA1_c07210at 742.253 kb on + strand, within PGA1_c07210at 742.260 kb on - strand, within PGA1_c07210at 742.266 kb on - strand, within PGA1_c07210at 742.332 kb on - strand, within PGA1_c07210at 742.337 kb on - strand, within PGA1_c07210at 742.424 kb on + strand, within PGA1_c07210at 742.427 kb on - strand, within PGA1_c07210at 742.477 kb on + strand, within PGA1_c07210at 742.540 kb on + strandat 742.620 kb on - strandat 742.663 kb on + strandat 742.663 kb on + strandat 742.671 kb on - strand, within PGA1_c07220at 742.738 kb on - strand, within PGA1_c07220at 742.790 kb on - strand, within PGA1_c07220at 742.842 kb on - strand, within PGA1_c07220at 742.892 kb on - strand, within PGA1_c07220at 743.023 kb on + strand, within PGA1_c07220at 743.079 kb on + strand, within PGA1_c07220at 743.109 kb on + strand, within PGA1_c07220at 743.127 kb on - strand, within PGA1_c07220at 743.133 kb on - strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.156 kb on + strand, within PGA1_c07220at 743.164 kb on - strand, within PGA1_c07220at 743.164 kb on - strand, within PGA1_c07220at 743.164 kb on - strand, within PGA1_c07220at 743.181 kb on + strand, within PGA1_c07220at 743.192 kb on + strand, within PGA1_c07220at 743.262 kb on + strand, within PGA1_c07220at 743.267 kb on + strand, within PGA1_c07220at 743.270 kb on - strand, within PGA1_c07220at 743.271 kb on + strand, within PGA1_c07220at 743.340 kb on - strandat 743.373 kb on + strandat 743.467 kb on - strandat 743.511 kb on + strand, within PGA1_c07230at 743.512 kb on + strand, within PGA1_c07230at 743.519 kb on - strand, within PGA1_c07230at 743.564 kb on + strand, within PGA1_c07230at 743.572 kb on - strand, within PGA1_c07230at 743.572 kb on - strand, within PGA1_c07230

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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740,638 + PGA1_c07200 0.20 -1.7
740,724 + PGA1_c07200 0.27 +0.9
740,726 + PGA1_c07200 0.27 +0.8
740,732 - PGA1_c07200 0.28 -3.1
740,739 + PGA1_c07200 0.28 -1.3
740,773 + PGA1_c07200 0.31 -1.2
740,810 + PGA1_c07200 0.34 -1.2
740,810 + PGA1_c07200 0.34 +0.5
740,818 - PGA1_c07200 0.35 -2.3
740,829 - PGA1_c07200 0.36 +1.2
740,894 - PGA1_c07200 0.41 -2.0
740,912 + PGA1_c07200 0.43 +0.5
741,030 + PGA1_c07200 0.53 +0.5
741,038 - PGA1_c07200 0.53 -1.1
741,089 - PGA1_c07200 0.58 -1.1
741,089 - PGA1_c07200 0.58 +1.9
741,118 - PGA1_c07200 0.60 -0.4
741,124 + PGA1_c07200 0.61 -1.6
741,132 + PGA1_c07200 0.61 -0.1
741,132 + PGA1_c07200 0.61 +0.7
741,132 + PGA1_c07200 0.61 -0.7
741,140 - PGA1_c07200 0.62 +0.3
741,140 - PGA1_c07200 0.62 +0.8
741,140 - PGA1_c07200 0.62 -0.5
741,140 - PGA1_c07200 0.62 -1.6
741,140 - PGA1_c07200 0.62 -0.4
741,140 - PGA1_c07200 0.62 -3.1
741,140 - PGA1_c07200 0.62 +1.1
741,140 - PGA1_c07200 0.62 +0.6
741,140 - PGA1_c07200 0.62 -1.9
741,140 - PGA1_c07200 0.62 +0.1
741,149 + PGA1_c07200 0.63 -1.4
741,180 + PGA1_c07200 0.65 +0.0
741,180 + PGA1_c07200 0.65 +1.7
741,180 + PGA1_c07200 0.65 -0.1
741,258 - PGA1_c07200 0.72 -1.6
741,269 - PGA1_c07200 0.73 +0.6
741,297 + PGA1_c07200 0.75 +0.7
741,297 + PGA1_c07200 0.75 -1.1
741,305 - PGA1_c07200 0.76 +0.6
741,315 - PGA1_c07200 0.77 +0.5
741,374 + PGA1_c07200 0.82 +0.6
741,407 - PGA1_c07200 0.84 -1.3
741,432 - PGA1_c07200 0.87 -0.1
741,478 + +0.1
741,497 + +0.8
741,510 + -1.6
741,522 + -1.3
741,610 - +0.6
741,799 + PGA1_c07210 0.20 -1.4
741,823 - PGA1_c07210 0.22 -2.0
741,849 + PGA1_c07210 0.25 -0.5
741,857 + PGA1_c07210 0.26 -0.8
741,865 - PGA1_c07210 0.27 -2.2
741,865 - PGA1_c07210 0.27 +1.1
741,865 - PGA1_c07210 0.27 -1.3
741,865 - PGA1_c07210 0.27 +0.3
741,865 - PGA1_c07210 0.27 -2.0
741,865 - PGA1_c07210 0.27 -0.9
741,865 - PGA1_c07210 0.27 +0.3
741,901 - PGA1_c07210 0.30 -1.8
741,948 - PGA1_c07210 0.35 -1.1
741,961 + PGA1_c07210 0.36 +0.4
741,994 + PGA1_c07210 0.40 +0.9
742,114 + PGA1_c07210 0.52 +0.3
742,124 + PGA1_c07210 0.53 -1.5
742,127 + PGA1_c07210 0.53 +0.0
742,173 + PGA1_c07210 0.58 -1.2
742,230 + PGA1_c07210 0.64 -1.6
742,230 + PGA1_c07210 0.64 -0.9
742,238 - PGA1_c07210 0.64 +1.5
742,252 + PGA1_c07210 0.66 -0.5
742,253 + PGA1_c07210 0.66 -1.7
742,260 - PGA1_c07210 0.67 -0.5
742,266 - PGA1_c07210 0.67 +0.9
742,332 - PGA1_c07210 0.74 +1.0
742,337 - PGA1_c07210 0.74 -0.3
742,424 + PGA1_c07210 0.83 -2.1
742,427 - PGA1_c07210 0.83 +1.3
742,477 + PGA1_c07210 0.89 +0.8
742,540 + +0.4
742,620 - +0.5
742,663 + -0.6
742,663 + -2.5
742,671 - PGA1_c07220 0.10 +0.1
742,738 - PGA1_c07220 0.18 +0.9
742,790 - PGA1_c07220 0.25 -0.3
742,842 - PGA1_c07220 0.31 +0.2
742,892 - PGA1_c07220 0.37 -0.5
743,023 + PGA1_c07220 0.52 +0.9
743,079 + PGA1_c07220 0.59 +1.2
743,109 + PGA1_c07220 0.63 +0.3
743,127 - PGA1_c07220 0.65 +0.8
743,133 - PGA1_c07220 0.65 -0.2
743,156 + PGA1_c07220 0.68 -1.8
743,156 + PGA1_c07220 0.68 +0.5
743,156 + PGA1_c07220 0.68 +0.1
743,156 + PGA1_c07220 0.68 -0.2
743,156 + PGA1_c07220 0.68 -1.2
743,164 - PGA1_c07220 0.69 -0.5
743,164 - PGA1_c07220 0.69 +0.9
743,164 - PGA1_c07220 0.69 +1.5
743,181 + PGA1_c07220 0.71 -1.6
743,192 + PGA1_c07220 0.72 -0.6
743,262 + PGA1_c07220 0.81 -0.2
743,267 + PGA1_c07220 0.81 +0.4
743,270 - PGA1_c07220 0.82 +0.7
743,271 + PGA1_c07220 0.82 +1.6
743,340 - -1.8
743,373 + -0.8
743,467 - -2.6
743,511 + PGA1_c07230 0.11 -1.3
743,512 + PGA1_c07230 0.11 -0.8
743,519 - PGA1_c07230 0.12 -0.3
743,564 + PGA1_c07230 0.17 +0.5
743,572 - PGA1_c07230 0.18 -0.1
743,572 - PGA1_c07230 0.18 -3.2

Or see this region's nucleotide sequence