Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05320 and PGA1_c05330 overlap by 4 nucleotides PGA1_c05330 and PGA1_c05340 overlap by 4 nucleotides PGA1_c05340 and PGA1_c05350 overlap by 4 nucleotides
PGA1_c05320: PGA1_c05320 - hypothetical protein, at 528,577 to 531,147
_c05320
PGA1_c05330: PGA1_c05330 - hypothetical protein, at 531,144 to 532,046
_c05330
PGA1_c05340: PGA1_c05340 - 4'-phosphopantetheinyl transferase-like protein, at 532,043 to 532,756
_c05340
PGA1_c05350: PGA1_c05350 - dimodular nonribosomal peptide synthetase, at 532,753 to 537,387
_c05350
Position (kb) 531
532
533 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 530.183 kb on - strand, within PGA1_c05320 at 530.268 kb on - strand, within PGA1_c05320 at 530.273 kb on - strand, within PGA1_c05320 at 530.273 kb on - strand, within PGA1_c05320 at 530.283 kb on - strand, within PGA1_c05320 at 530.477 kb on + strand, within PGA1_c05320 at 530.559 kb on + strand, within PGA1_c05320 at 530.562 kb on - strand, within PGA1_c05320 at 530.570 kb on + strand, within PGA1_c05320 at 530.578 kb on - strand, within PGA1_c05320 at 530.578 kb on - strand, within PGA1_c05320 at 530.589 kb on + strand, within PGA1_c05320 at 530.597 kb on - strand, within PGA1_c05320 at 530.600 kb on + strand, within PGA1_c05320 at 530.688 kb on - strand, within PGA1_c05320 at 530.747 kb on - strand, within PGA1_c05320 at 530.758 kb on + strand, within PGA1_c05320 at 530.758 kb on + strand, within PGA1_c05320 at 530.758 kb on + strand, within PGA1_c05320 at 530.763 kb on + strand, within PGA1_c05320 at 530.763 kb on + strand, within PGA1_c05320 at 530.767 kb on + strand, within PGA1_c05320 at 530.814 kb on + strand, within PGA1_c05320 at 530.843 kb on + strand, within PGA1_c05320 at 530.942 kb on + strand at 530.942 kb on + strand at 530.947 kb on + strand at 530.950 kb on - strand at 530.952 kb on + strand at 530.960 kb on - strand at 530.960 kb on - strand at 530.967 kb on + strand at 531.027 kb on - strand at 531.030 kb on + strand at 531.037 kb on + strand at 531.066 kb on + strand at 531.124 kb on + strand at 531.168 kb on - strand at 531.168 kb on - strand at 531.214 kb on - strand at 531.228 kb on + strand at 531.309 kb on + strand, within PGA1_c05330 at 531.420 kb on + strand, within PGA1_c05330 at 531.428 kb on - strand, within PGA1_c05330 at 531.445 kb on + strand, within PGA1_c05330 at 531.571 kb on + strand, within PGA1_c05330 at 531.582 kb on - strand, within PGA1_c05330 at 531.633 kb on + strand, within PGA1_c05330 at 531.633 kb on + strand, within PGA1_c05330 at 531.638 kb on + strand, within PGA1_c05330 at 531.641 kb on - strand, within PGA1_c05330 at 531.641 kb on - strand, within PGA1_c05330 at 531.646 kb on - strand, within PGA1_c05330 at 531.721 kb on + strand, within PGA1_c05330 at 531.736 kb on + strand, within PGA1_c05330 at 531.801 kb on + strand, within PGA1_c05330 at 531.840 kb on - strand, within PGA1_c05330 at 531.902 kb on + strand, within PGA1_c05330 at 531.931 kb on - strand, within PGA1_c05330 at 531.960 kb on + strand at 531.982 kb on - strand at 532.017 kb on - strand at 532.782 kb on + strand at 532.865 kb on + strand at 532.905 kb on + strand at 532.995 kb on - strand at 533.035 kb on - strand at 533.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 530,183 - PGA1_c05320 0.62 -1.0 530,268 - PGA1_c05320 0.66 -1.4 530,273 - PGA1_c05320 0.66 -0.0 530,273 - PGA1_c05320 0.66 +1.5 530,283 - PGA1_c05320 0.66 -4.4 530,477 + PGA1_c05320 0.74 -0.8 530,559 + PGA1_c05320 0.77 -3.5 530,562 - PGA1_c05320 0.77 +0.3 530,570 + PGA1_c05320 0.78 -1.2 530,578 - PGA1_c05320 0.78 -0.8 530,578 - PGA1_c05320 0.78 +0.7 530,589 + PGA1_c05320 0.78 -1.9 530,597 - PGA1_c05320 0.79 +0.5 530,600 + PGA1_c05320 0.79 -0.7 530,688 - PGA1_c05320 0.82 -0.1 530,747 - PGA1_c05320 0.84 -0.0 530,758 + PGA1_c05320 0.85 -1.2 530,758 + PGA1_c05320 0.85 +0.5 530,758 + PGA1_c05320 0.85 +0.2 530,763 + PGA1_c05320 0.85 -3.4 530,763 + PGA1_c05320 0.85 -0.3 530,767 + PGA1_c05320 0.85 +1.7 530,814 + PGA1_c05320 0.87 -2.6 530,843 + PGA1_c05320 0.88 -1.3 530,942 + +0.6 530,942 + -2.1 530,947 + -1.2 530,950 - -0.6 530,952 + -1.0 530,960 - +0.1 530,960 - -0.2 530,967 + -0.4 531,027 - +3.4 531,030 + +1.4 531,037 + +0.8 531,066 + +0.0 531,124 + +0.0 531,168 - +1.0 531,168 - +0.3 531,214 - +0.4 531,228 + +0.4 531,309 + PGA1_c05330 0.18 -0.7 531,420 + PGA1_c05330 0.31 +0.1 531,428 - PGA1_c05330 0.31 -2.4 531,445 + PGA1_c05330 0.33 +1.3 531,571 + PGA1_c05330 0.47 -1.3 531,582 - PGA1_c05330 0.49 +0.5 531,633 + PGA1_c05330 0.54 -3.1 531,633 + PGA1_c05330 0.54 -1.6 531,638 + PGA1_c05330 0.55 -1.0 531,641 - PGA1_c05330 0.55 -0.6 531,641 - PGA1_c05330 0.55 -1.4 531,646 - PGA1_c05330 0.56 -2.4 531,721 + PGA1_c05330 0.64 +1.5 531,736 + PGA1_c05330 0.66 -2.1 531,801 + PGA1_c05330 0.73 +0.5 531,840 - PGA1_c05330 0.77 +2.9 531,902 + PGA1_c05330 0.84 -1.3 531,931 - PGA1_c05330 0.87 -1.5 531,960 + +0.5 531,982 - -1.9 532,017 - -0.6 532,782 + -2.0 532,865 + -1.5 532,905 + -0.8 532,995 - -2.2 533,035 - +0.9 533,046 - +1.0
Or see this region's nucleotide sequence