Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04140

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04130 and PGA1_c04140 overlap by 4 nucleotidesPGA1_c04140 and PGA1_c04150 overlap by 20 nucleotidesPGA1_c04150 and PGA1_c04160 are separated by 63 nucleotides PGA1_c04130: PGA1_c04130 - putative acyl-CoA dehydrogenase, at 400,419 to 401,618 _c04130 PGA1_c04140: PGA1_c04140 - putative acyl-CoA dehydrogenase, at 401,615 to 402,760 _c04140 PGA1_c04150: PGA1_c04150 - thioesterase domain-containing protein, at 402,741 to 403,205 _c04150 PGA1_c04160: PGA1_c04160 - putative crotonobetaine/carnitine-CoA ligase, at 403,269 to 404,774 _c04160 Position (kb) 401 402 403Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 400.629 kb on - strand, within PGA1_c04130at 400.632 kb on + strand, within PGA1_c04130at 400.677 kb on - strand, within PGA1_c04130at 400.690 kb on + strand, within PGA1_c04130at 400.698 kb on - strand, within PGA1_c04130at 400.698 kb on - strand, within PGA1_c04130at 400.743 kb on - strand, within PGA1_c04130at 400.743 kb on - strand, within PGA1_c04130at 400.743 kb on - strand, within PGA1_c04130at 400.799 kb on - strand, within PGA1_c04130at 400.800 kb on - strand, within PGA1_c04130at 400.824 kb on + strand, within PGA1_c04130at 400.832 kb on - strand, within PGA1_c04130at 400.841 kb on + strand, within PGA1_c04130at 400.851 kb on + strand, within PGA1_c04130at 400.859 kb on - strand, within PGA1_c04130at 400.900 kb on + strand, within PGA1_c04130at 400.900 kb on + strand, within PGA1_c04130at 400.908 kb on - strand, within PGA1_c04130at 400.908 kb on - strand, within PGA1_c04130at 400.908 kb on - strand, within PGA1_c04130at 400.934 kb on + strand, within PGA1_c04130at 400.934 kb on + strand, within PGA1_c04130at 400.940 kb on + strand, within PGA1_c04130at 401.002 kb on - strand, within PGA1_c04130at 401.002 kb on - strand, within PGA1_c04130at 401.005 kb on + strand, within PGA1_c04130at 401.005 kb on + strand, within PGA1_c04130at 401.013 kb on - strand, within PGA1_c04130at 401.013 kb on - strand, within PGA1_c04130at 401.115 kb on + strand, within PGA1_c04130at 401.115 kb on + strand, within PGA1_c04130at 401.115 kb on + strand, within PGA1_c04130at 401.115 kb on + strand, within PGA1_c04130at 401.116 kb on - strand, within PGA1_c04130at 401.116 kb on - strand, within PGA1_c04130at 401.116 kb on - strand, within PGA1_c04130at 401.123 kb on - strand, within PGA1_c04130at 401.159 kb on - strand, within PGA1_c04130at 401.174 kb on - strand, within PGA1_c04130at 401.222 kb on + strand, within PGA1_c04130at 401.230 kb on - strand, within PGA1_c04130at 401.316 kb on - strand, within PGA1_c04130at 401.332 kb on - strand, within PGA1_c04130at 401.348 kb on + strand, within PGA1_c04130at 401.546 kb on + strandat 401.638 kb on + strandat 401.683 kb on + strandat 401.714 kb on - strandat 401.721 kb on + strandat 401.721 kb on + strandat 401.721 kb on + strandat 401.721 kb on + strandat 401.726 kb on + strandat 401.726 kb on + strandat 401.726 kb on + strandat 401.734 kb on - strand, within PGA1_c04140at 401.816 kb on + strand, within PGA1_c04140at 401.816 kb on + strand, within PGA1_c04140at 401.824 kb on - strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.843 kb on + strand, within PGA1_c04140at 401.851 kb on - strand, within PGA1_c04140at 401.851 kb on - strand, within PGA1_c04140at 401.851 kb on - strand, within PGA1_c04140at 401.858 kb on + strand, within PGA1_c04140at 401.885 kb on + strand, within PGA1_c04140at 401.898 kb on + strand, within PGA1_c04140at 402.025 kb on + strand, within PGA1_c04140at 402.035 kb on - strand, within PGA1_c04140at 402.165 kb on + strand, within PGA1_c04140at 402.205 kb on - strand, within PGA1_c04140at 402.248 kb on - strand, within PGA1_c04140at 402.372 kb on - strand, within PGA1_c04140at 402.374 kb on - strand, within PGA1_c04140at 402.403 kb on + strand, within PGA1_c04140at 402.497 kb on - strand, within PGA1_c04140at 402.497 kb on - strand, within PGA1_c04140at 402.499 kb on + strand, within PGA1_c04140at 402.499 kb on + strand, within PGA1_c04140at 402.512 kb on - strand, within PGA1_c04140at 402.514 kb on + strand, within PGA1_c04140at 402.514 kb on + strand, within PGA1_c04140at 402.725 kb on + strandat 402.746 kb on - strandat 402.753 kb on - strandat 402.754 kb on + strandat 402.801 kb on - strand, within PGA1_c04150at 402.846 kb on - strand, within PGA1_c04150at 402.846 kb on - strand, within PGA1_c04150at 402.886 kb on - strand, within PGA1_c04150at 402.886 kb on - strand, within PGA1_c04150at 402.933 kb on + strand, within PGA1_c04150at 403.057 kb on - strand, within PGA1_c04150at 403.082 kb on - strand, within PGA1_c04150at 403.087 kb on - strand, within PGA1_c04150at 403.124 kb on - strand, within PGA1_c04150at 403.139 kb on + strand, within PGA1_c04150at 403.209 kb on - strandat 403.209 kb on - strandat 403.251 kb on + strandat 403.251 kb on + strandat 403.262 kb on - strandat 403.266 kb on + strandat 403.267 kb on - strandat 403.321 kb on - strandat 403.347 kb on - strandat 403.355 kb on + strandat 403.406 kb on - strandat 403.406 kb on - strandat 403.417 kb on - strandat 403.426 kb on + strand, within PGA1_c04160at 403.478 kb on + strand, within PGA1_c04160at 403.494 kb on - strand, within PGA1_c04160at 403.568 kb on + strand, within PGA1_c04160at 403.576 kb on - strand, within PGA1_c04160at 403.576 kb on - strand, within PGA1_c04160at 403.576 kb on - strand, within PGA1_c04160at 403.583 kb on + strand, within PGA1_c04160at 403.588 kb on - strand, within PGA1_c04160at 403.733 kb on + strand, within PGA1_c04160at 403.733 kb on + strand, within PGA1_c04160at 403.736 kb on - strand, within PGA1_c04160at 403.736 kb on - strand, within PGA1_c04160at 403.741 kb on - strand, within PGA1_c04160

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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400,629 - PGA1_c04130 0.17 +0.2
400,632 + PGA1_c04130 0.18 +0.5
400,677 - PGA1_c04130 0.21 -2.4
400,690 + PGA1_c04130 0.23 -1.3
400,698 - PGA1_c04130 0.23 -0.1
400,698 - PGA1_c04130 0.23 +0.9
400,743 - PGA1_c04130 0.27 -1.3
400,743 - PGA1_c04130 0.27 +0.7
400,743 - PGA1_c04130 0.27 -0.3
400,799 - PGA1_c04130 0.32 +1.7
400,800 - PGA1_c04130 0.32 -2.0
400,824 + PGA1_c04130 0.34 +0.2
400,832 - PGA1_c04130 0.34 +0.9
400,841 + PGA1_c04130 0.35 +2.2
400,851 + PGA1_c04130 0.36 +0.5
400,859 - PGA1_c04130 0.37 +0.8
400,900 + PGA1_c04130 0.40 +0.2
400,900 + PGA1_c04130 0.40 -0.3
400,908 - PGA1_c04130 0.41 +1.3
400,908 - PGA1_c04130 0.41 -3.0
400,908 - PGA1_c04130 0.41 -0.7
400,934 + PGA1_c04130 0.43 -0.8
400,934 + PGA1_c04130 0.43 -2.4
400,940 + PGA1_c04130 0.43 +0.0
401,002 - PGA1_c04130 0.49 +0.6
401,002 - PGA1_c04130 0.49 -0.2
401,005 + PGA1_c04130 0.49 -0.4
401,005 + PGA1_c04130 0.49 -0.6
401,013 - PGA1_c04130 0.49 +0.5
401,013 - PGA1_c04130 0.49 -1.0
401,115 + PGA1_c04130 0.58 +1.4
401,115 + PGA1_c04130 0.58 +0.9
401,115 + PGA1_c04130 0.58 -0.7
401,115 + PGA1_c04130 0.58 -0.9
401,116 - PGA1_c04130 0.58 +1.2
401,116 - PGA1_c04130 0.58 -2.4
401,116 - PGA1_c04130 0.58 +0.5
401,123 - PGA1_c04130 0.59 -0.1
401,159 - PGA1_c04130 0.62 +1.3
401,174 - PGA1_c04130 0.63 +0.3
401,222 + PGA1_c04130 0.67 -0.1
401,230 - PGA1_c04130 0.68 -2.1
401,316 - PGA1_c04130 0.75 +1.5
401,332 - PGA1_c04130 0.76 +0.6
401,348 + PGA1_c04130 0.77 -0.7
401,546 + +0.3
401,638 + -1.7
401,683 + +0.0
401,714 - +0.4
401,721 + +1.6
401,721 + -1.8
401,721 + -0.2
401,721 + +0.7
401,726 + +0.1
401,726 + -0.7
401,726 + -2.1
401,734 - PGA1_c04140 0.10 -2.0
401,816 + PGA1_c04140 0.18 -0.4
401,816 + PGA1_c04140 0.18 +1.1
401,824 - PGA1_c04140 0.18 +1.3
401,843 + PGA1_c04140 0.20 +0.7
401,843 + PGA1_c04140 0.20 +0.3
401,843 + PGA1_c04140 0.20 -2.1
401,843 + PGA1_c04140 0.20 -1.4
401,843 + PGA1_c04140 0.20 -0.7
401,851 - PGA1_c04140 0.21 -0.7
401,851 - PGA1_c04140 0.21 -0.3
401,851 - PGA1_c04140 0.21 +0.2
401,858 + PGA1_c04140 0.21 +0.4
401,885 + PGA1_c04140 0.24 -0.8
401,898 + PGA1_c04140 0.25 +0.0
402,025 + PGA1_c04140 0.36 +0.7
402,035 - PGA1_c04140 0.37 +0.7
402,165 + PGA1_c04140 0.48 -0.1
402,205 - PGA1_c04140 0.51 +0.5
402,248 - PGA1_c04140 0.55 +1.1
402,372 - PGA1_c04140 0.66 -0.5
402,374 - PGA1_c04140 0.66 +1.2
402,403 + PGA1_c04140 0.69 -0.4
402,497 - PGA1_c04140 0.77 -1.3
402,497 - PGA1_c04140 0.77 -0.0
402,499 + PGA1_c04140 0.77 +0.9
402,499 + PGA1_c04140 0.77 -0.2
402,512 - PGA1_c04140 0.78 -2.3
402,514 + PGA1_c04140 0.78 -0.8
402,514 + PGA1_c04140 0.78 -2.5
402,725 + +2.5
402,746 - -3.1
402,753 - -3.2
402,754 + -2.7
402,801 - PGA1_c04150 0.13 -0.7
402,846 - PGA1_c04150 0.23 +1.1
402,846 - PGA1_c04150 0.23 -2.4
402,886 - PGA1_c04150 0.31 -0.1
402,886 - PGA1_c04150 0.31 +0.5
402,933 + PGA1_c04150 0.41 -0.0
403,057 - PGA1_c04150 0.68 +0.3
403,082 - PGA1_c04150 0.73 +0.1
403,087 - PGA1_c04150 0.74 +0.1
403,124 - PGA1_c04150 0.82 -0.5
403,139 + PGA1_c04150 0.86 +1.6
403,209 - +0.1
403,209 - -0.5
403,251 + -1.8
403,251 + -1.0
403,262 - -0.3
403,266 + -3.2
403,267 - +0.5
403,321 - -1.3
403,347 - -0.3
403,355 + +0.3
403,406 - -3.0
403,406 - -0.9
403,417 - +1.5
403,426 + PGA1_c04160 0.10 +0.7
403,478 + PGA1_c04160 0.14 -0.2
403,494 - PGA1_c04160 0.15 +0.3
403,568 + PGA1_c04160 0.20 +1.6
403,576 - PGA1_c04160 0.20 +0.2
403,576 - PGA1_c04160 0.20 -1.0
403,576 - PGA1_c04160 0.20 +0.1
403,583 + PGA1_c04160 0.21 -0.2
403,588 - PGA1_c04160 0.21 -0.2
403,733 + PGA1_c04160 0.31 +0.1
403,733 + PGA1_c04160 0.31 -0.1
403,736 - PGA1_c04160 0.31 -0.8
403,736 - PGA1_c04160 0.31 -0.7
403,741 - PGA1_c04160 0.31 -0.5

Or see this region's nucleotide sequence