Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01690

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01670 and PGA1_262p01680 are separated by 57 nucleotidesPGA1_262p01680 and PGA1_262p01690 are separated by 107 nucleotidesPGA1_262p01690 and PGA1_262p01700 are separated by 22 nucleotides PGA1_262p01670: PGA1_262p01670 - putative transcriptional regulator, LysR family, at 182,605 to 183,483 _262p01670 PGA1_262p01680: PGA1_262p01680 - hypothetical protein, at 183,541 to 184,329 _262p01680 PGA1_262p01690: PGA1_262p01690 - peptidase S15, at 184,437 to 186,416 _262p01690 PGA1_262p01700: PGA1_262p01700 - putative ABC transporter, solute-binding protein, at 186,439 to 187,989 _262p01700 Position (kb) 184 185 186 187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 183.609 kb on + strandat 183.617 kb on - strandat 183.734 kb on - strand, within PGA1_262p01680at 183.734 kb on - strand, within PGA1_262p01680at 183.762 kb on + strand, within PGA1_262p01680at 183.775 kb on - strand, within PGA1_262p01680at 183.775 kb on - strand, within PGA1_262p01680at 183.803 kb on - strand, within PGA1_262p01680at 183.960 kb on + strand, within PGA1_262p01680at 183.960 kb on + strand, within PGA1_262p01680at 183.968 kb on - strand, within PGA1_262p01680at 184.074 kb on + strand, within PGA1_262p01680at 184.270 kb on + strandat 184.570 kb on - strandat 184.722 kb on + strand, within PGA1_262p01690at 184.832 kb on + strand, within PGA1_262p01690at 184.840 kb on - strand, within PGA1_262p01690at 184.840 kb on - strand, within PGA1_262p01690at 184.933 kb on + strand, within PGA1_262p01690at 184.940 kb on - strand, within PGA1_262p01690at 184.940 kb on - strand, within PGA1_262p01690at 184.945 kb on - strand, within PGA1_262p01690at 185.003 kb on - strand, within PGA1_262p01690at 185.016 kb on + strand, within PGA1_262p01690at 185.032 kb on - strand, within PGA1_262p01690at 185.041 kb on + strand, within PGA1_262p01690at 185.158 kb on + strand, within PGA1_262p01690at 185.201 kb on - strand, within PGA1_262p01690at 185.201 kb on - strand, within PGA1_262p01690at 185.219 kb on + strand, within PGA1_262p01690at 185.238 kb on - strand, within PGA1_262p01690at 185.256 kb on - strand, within PGA1_262p01690at 185.284 kb on - strand, within PGA1_262p01690at 185.309 kb on + strand, within PGA1_262p01690at 185.309 kb on + strand, within PGA1_262p01690at 185.398 kb on + strand, within PGA1_262p01690at 185.406 kb on - strand, within PGA1_262p01690at 185.501 kb on + strand, within PGA1_262p01690at 185.528 kb on - strand, within PGA1_262p01690at 185.663 kb on - strand, within PGA1_262p01690at 185.687 kb on - strand, within PGA1_262p01690at 185.708 kb on + strand, within PGA1_262p01690at 185.791 kb on + strand, within PGA1_262p01690at 185.799 kb on - strand, within PGA1_262p01690at 185.838 kb on - strand, within PGA1_262p01690at 185.840 kb on + strand, within PGA1_262p01690at 185.899 kb on - strand, within PGA1_262p01690at 186.073 kb on - strand, within PGA1_262p01690at 186.168 kb on - strand, within PGA1_262p01690at 186.168 kb on - strand, within PGA1_262p01690at 186.168 kb on - strand, within PGA1_262p01690at 186.210 kb on - strand, within PGA1_262p01690at 186.220 kb on - strandat 186.220 kb on - strandat 186.436 kb on - strandat 186.513 kb on - strandat 186.536 kb on - strandat 186.606 kb on - strand, within PGA1_262p01700at 186.725 kb on - strand, within PGA1_262p01700at 186.754 kb on + strand, within PGA1_262p01700at 186.774 kb on - strand, within PGA1_262p01700at 186.883 kb on - strand, within PGA1_262p01700at 186.902 kb on + strand, within PGA1_262p01700at 186.941 kb on + strand, within PGA1_262p01700at 187.195 kb on - strand, within PGA1_262p01700

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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183,609 + -1.4
183,617 - -1.9
183,734 - PGA1_262p01680 0.24 +0.2
183,734 - PGA1_262p01680 0.24 +1.5
183,762 + PGA1_262p01680 0.28 -1.6
183,775 - PGA1_262p01680 0.30 +0.6
183,775 - PGA1_262p01680 0.30 +1.1
183,803 - PGA1_262p01680 0.33 -2.8
183,960 + PGA1_262p01680 0.53 +0.1
183,960 + PGA1_262p01680 0.53 -0.3
183,968 - PGA1_262p01680 0.54 -1.3
184,074 + PGA1_262p01680 0.68 -1.9
184,270 + +1.4
184,570 - +0.6
184,722 + PGA1_262p01690 0.14 -1.5
184,832 + PGA1_262p01690 0.20 +0.1
184,840 - PGA1_262p01690 0.20 -0.4
184,840 - PGA1_262p01690 0.20 -1.4
184,933 + PGA1_262p01690 0.25 -0.3
184,940 - PGA1_262p01690 0.25 -0.5
184,940 - PGA1_262p01690 0.25 +0.8
184,945 - PGA1_262p01690 0.26 +1.1
185,003 - PGA1_262p01690 0.29 -0.5
185,016 + PGA1_262p01690 0.29 +1.1
185,032 - PGA1_262p01690 0.30 +0.3
185,041 + PGA1_262p01690 0.31 +0.8
185,158 + PGA1_262p01690 0.36 -0.7
185,201 - PGA1_262p01690 0.39 -0.7
185,201 - PGA1_262p01690 0.39 -0.7
185,219 + PGA1_262p01690 0.39 -1.7
185,238 - PGA1_262p01690 0.40 +0.4
185,256 - PGA1_262p01690 0.41 -0.6
185,284 - PGA1_262p01690 0.43 +1.0
185,309 + PGA1_262p01690 0.44 +0.4
185,309 + PGA1_262p01690 0.44 +0.9
185,398 + PGA1_262p01690 0.49 -3.1
185,406 - PGA1_262p01690 0.49 +1.1
185,501 + PGA1_262p01690 0.54 -1.9
185,528 - PGA1_262p01690 0.55 +2.5
185,663 - PGA1_262p01690 0.62 +0.5
185,687 - PGA1_262p01690 0.63 +1.5
185,708 + PGA1_262p01690 0.64 +1.9
185,791 + PGA1_262p01690 0.68 +1.3
185,799 - PGA1_262p01690 0.69 -1.5
185,838 - PGA1_262p01690 0.71 +1.5
185,840 + PGA1_262p01690 0.71 +0.5
185,899 - PGA1_262p01690 0.74 -0.7
186,073 - PGA1_262p01690 0.83 -0.3
186,168 - PGA1_262p01690 0.87 +2.7
186,168 - PGA1_262p01690 0.87 +1.5
186,168 - PGA1_262p01690 0.87 +0.9
186,210 - PGA1_262p01690 0.90 -0.8
186,220 - -0.2
186,220 - +1.1
186,436 - +0.1
186,513 - -3.0
186,536 - -1.2
186,606 - PGA1_262p01700 0.11 -0.7
186,725 - PGA1_262p01700 0.18 +0.6
186,754 + PGA1_262p01700 0.20 +0.8
186,774 - PGA1_262p01700 0.22 +0.4
186,883 - PGA1_262p01700 0.29 +0.4
186,902 + PGA1_262p01700 0.30 -0.4
186,941 + PGA1_262p01700 0.32 +1.1
187,195 - PGA1_262p01700 0.49 -1.9

Or see this region's nucleotide sequence