Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01380 and PGA1_262p01390 are separated by 3 nucleotides PGA1_262p01390 and PGA1_262p01400 are separated by 144 nucleotides PGA1_262p01400 and PGA1_262p01410 are separated by 91 nucleotides
PGA1_262p01380: PGA1_262p01380 - aldehyde dehydrogenase, at 148,616 to 150,067
_262p01380
PGA1_262p01390: PGA1_262p01390 - hypothetical protein, at 150,071 to 150,310
_262p01390
PGA1_262p01400: PGA1_262p01400 - dimethylglycine dehydrogenase DmgdH, at 150,455 to 152,875
_262p01400
PGA1_262p01410: PGA1_262p01410 - malate/L-lactate dehydrogenase-like protein, at 152,967 to 153,404
_262p01410
Position (kb) 150
151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 149.471 kb on + strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380 at 149.536 kb on - strand, within PGA1_262p01380 at 149.726 kb on + strand, within PGA1_262p01380 at 149.726 kb on + strand, within PGA1_262p01380 at 149.918 kb on + strand, within PGA1_262p01380 at 149.926 kb on - strand at 150.019 kb on + strand at 150.019 kb on + strand at 150.019 kb on + strand at 150.019 kb on + strand at 150.027 kb on - strand at 150.027 kb on - strand at 150.066 kb on + strand at 150.092 kb on - strand at 150.134 kb on - strand, within PGA1_262p01390 at 150.150 kb on - strand, within PGA1_262p01390 at 150.267 kb on - strand, within PGA1_262p01390 at 150.278 kb on + strand, within PGA1_262p01390 at 150.286 kb on - strand, within PGA1_262p01390 at 150.286 kb on - strand, within PGA1_262p01390 at 150.358 kb on + strand at 150.366 kb on - strand at 150.447 kb on + strand at 150.470 kb on - strand at 150.558 kb on + strand at 150.588 kb on + strand at 150.689 kb on + strand at 150.697 kb on - strand, within PGA1_262p01400 at 150.706 kb on + strand, within PGA1_262p01400 at 150.729 kb on - strand, within PGA1_262p01400 at 150.734 kb on - strand, within PGA1_262p01400 at 150.778 kb on + strand, within PGA1_262p01400 at 150.813 kb on + strand, within PGA1_262p01400 at 150.823 kb on + strand, within PGA1_262p01400 at 150.830 kb on + strand, within PGA1_262p01400 at 151.036 kb on - strand, within PGA1_262p01400 at 151.074 kb on - strand, within PGA1_262p01400 at 151.229 kb on + strand, within PGA1_262p01400 at 151.243 kb on + strand, within PGA1_262p01400 at 151.642 kb on + strand, within PGA1_262p01400 at 151.687 kb on + strand, within PGA1_262p01400 at 151.692 kb on + strand, within PGA1_262p01400 at 151.700 kb on - strand, within PGA1_262p01400 at 151.789 kb on + strand, within PGA1_262p01400 at 151.926 kb on + strand, within PGA1_262p01400 at 151.926 kb on + strand, within PGA1_262p01400 at 151.934 kb on - strand, within PGA1_262p01400 at 151.986 kb on - strand, within PGA1_262p01400 at 152.006 kb on - strand, within PGA1_262p01400 at 152.418 kb on - strand, within PGA1_262p01400 at 152.423 kb on + strand, within PGA1_262p01400 at 152.446 kb on - strand, within PGA1_262p01400 at 152.749 kb on - strand at 152.792 kb on - strand at 152.792 kb on - strand at 152.856 kb on + strand at 153.193 kb on + strand, within PGA1_262p01410 at 153.201 kb on - strand, within PGA1_262p01410 at 153.342 kb on - strand, within PGA1_262p01410 at 153.367 kb on - strand at 153.369 kb on - strand at 153.648 kb on - strand at 153.691 kb on - strand at 153.749 kb on - strand at 153.749 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 149,471 + PGA1_262p01380 0.59 -0.5 149,536 - PGA1_262p01380 0.63 +1.1 149,536 - PGA1_262p01380 0.63 -1.7 149,726 + PGA1_262p01380 0.76 +0.5 149,726 + PGA1_262p01380 0.76 -1.9 149,918 + PGA1_262p01380 0.90 +0.7 149,926 - +1.7 150,019 + +0.0 150,019 + +1.0 150,019 + -0.1 150,019 + -0.8 150,027 - -2.5 150,027 - -1.0 150,066 + +1.9 150,092 - -0.3 150,134 - PGA1_262p01390 0.26 +0.7 150,150 - PGA1_262p01390 0.33 +0.1 150,267 - PGA1_262p01390 0.82 +1.8 150,278 + PGA1_262p01390 0.86 -0.7 150,286 - PGA1_262p01390 0.90 -0.3 150,286 - PGA1_262p01390 0.90 +0.9 150,358 + +0.1 150,366 - -0.1 150,447 + -0.5 150,470 - +0.1 150,558 + +0.1 150,588 + -0.5 150,689 + +0.1 150,697 - PGA1_262p01400 0.10 +0.5 150,706 + PGA1_262p01400 0.10 +3.0 150,729 - PGA1_262p01400 0.11 -0.6 150,734 - PGA1_262p01400 0.12 -1.6 150,778 + PGA1_262p01400 0.13 +0.4 150,813 + PGA1_262p01400 0.15 +1.9 150,823 + PGA1_262p01400 0.15 -0.2 150,830 + PGA1_262p01400 0.15 +0.4 151,036 - PGA1_262p01400 0.24 +0.6 151,074 - PGA1_262p01400 0.26 +2.1 151,229 + PGA1_262p01400 0.32 +0.1 151,243 + PGA1_262p01400 0.33 -0.7 151,642 + PGA1_262p01400 0.49 -0.1 151,687 + PGA1_262p01400 0.51 -1.2 151,692 + PGA1_262p01400 0.51 -2.1 151,700 - PGA1_262p01400 0.51 +0.4 151,789 + PGA1_262p01400 0.55 -2.8 151,926 + PGA1_262p01400 0.61 -1.2 151,926 + PGA1_262p01400 0.61 -2.6 151,934 - PGA1_262p01400 0.61 -0.5 151,986 - PGA1_262p01400 0.63 +2.1 152,006 - PGA1_262p01400 0.64 +0.1 152,418 - PGA1_262p01400 0.81 +1.4 152,423 + PGA1_262p01400 0.81 -1.4 152,446 - PGA1_262p01400 0.82 +2.2 152,749 - +0.9 152,792 - -1.9 152,792 - +0.8 152,856 + +0.9 153,193 + PGA1_262p01410 0.52 -0.3 153,201 - PGA1_262p01410 0.53 -0.7 153,342 - PGA1_262p01410 0.86 -1.8 153,367 - +0.6 153,369 - -1.6 153,648 - -0.2 153,691 - +0.7 153,749 - -0.3 153,749 - +1.1
Or see this region's nucleotide sequence