Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00480 and PGA1_262p00490 are separated by 38 nucleotides PGA1_262p00490 and PGA1_262p00500 are separated by 77 nucleotides PGA1_262p00500 and PGA1_262p00510 overlap by 1 nucleotides
PGA1_262p00480: PGA1_262p00480 - putative addiction module antidote protein, CC2985 family, at 55,955 to 56,230
_262p00480
PGA1_262p00490: PGA1_262p00490 - hypothetical protein, at 56,269 to 56,991
_262p00490
PGA1_262p00500: PGA1_262p00500 - putative ATP dependent DNA ligase, at 57,069 to 58,625
_262p00500
PGA1_262p00510: PGA1_262p00510 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 58,625 to 59,638
_262p00510
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.321 kb on - strand at 56.321 kb on - strand at 56.662 kb on + strand, within PGA1_262p00490 at 56.760 kb on + strand, within PGA1_262p00490 at 56.863 kb on + strand, within PGA1_262p00490 at 56.884 kb on + strand, within PGA1_262p00490 at 56.955 kb on + strand at 56.961 kb on + strand at 56.961 kb on + strand at 56.963 kb on - strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.969 kb on - strand at 56.969 kb on - strand at 56.974 kb on - strand at 57.024 kb on + strand at 57.057 kb on + strand at 57.065 kb on - strand at 57.065 kb on - strand at 57.095 kb on + strand at 57.245 kb on - strand, within PGA1_262p00500 at 57.296 kb on - strand, within PGA1_262p00500 at 57.296 kb on - strand, within PGA1_262p00500 at 57.331 kb on + strand, within PGA1_262p00500 at 57.331 kb on + strand, within PGA1_262p00500 at 57.339 kb on - strand, within PGA1_262p00500 at 57.376 kb on - strand, within PGA1_262p00500 at 57.390 kb on - strand, within PGA1_262p00500 at 57.531 kb on + strand, within PGA1_262p00500 at 57.560 kb on + strand, within PGA1_262p00500 at 57.571 kb on + strand, within PGA1_262p00500 at 57.579 kb on - strand, within PGA1_262p00500 at 57.693 kb on - strand, within PGA1_262p00500 at 57.871 kb on + strand, within PGA1_262p00500 at 57.879 kb on - strand, within PGA1_262p00500 at 58.043 kb on - strand, within PGA1_262p00500 at 58.045 kb on + strand, within PGA1_262p00500 at 58.081 kb on - strand, within PGA1_262p00500 at 58.081 kb on - strand, within PGA1_262p00500 at 58.081 kb on - strand, within PGA1_262p00500 at 58.117 kb on + strand, within PGA1_262p00500 at 58.150 kb on - strand, within PGA1_262p00500 at 58.193 kb on + strand, within PGA1_262p00500 at 58.239 kb on - strand, within PGA1_262p00500 at 58.300 kb on + strand, within PGA1_262p00500 at 58.373 kb on - strand, within PGA1_262p00500 at 58.487 kb on + strand at 58.515 kb on + strand at 58.583 kb on + strand at 58.771 kb on - strand, within PGA1_262p00510 at 58.776 kb on - strand, within PGA1_262p00510 at 58.776 kb on - strand, within PGA1_262p00510 at 58.815 kb on - strand, within PGA1_262p00510 at 58.915 kb on - strand, within PGA1_262p00510 at 58.923 kb on + strand, within PGA1_262p00510 at 59.107 kb on - strand, within PGA1_262p00510 at 59.342 kb on + strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.437 kb on - strand, within PGA1_262p00510 at 59.482 kb on - strand, within PGA1_262p00510 at 59.515 kb on + strand, within PGA1_262p00510 at 59.559 kb on + strand at 59.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 56,321 - -2.7 56,321 - -1.1 56,662 + PGA1_262p00490 0.54 -0.8 56,760 + PGA1_262p00490 0.68 -0.1 56,863 + PGA1_262p00490 0.82 +0.6 56,884 + PGA1_262p00490 0.85 +0.6 56,955 + +2.1 56,961 + -0.5 56,961 + +0.4 56,963 - -0.7 56,966 + +0.2 56,966 + +0.3 56,966 + -0.1 56,966 + +1.5 56,969 - +0.3 56,969 - +1.7 56,974 - +1.0 57,024 + +0.3 57,057 + -2.0 57,065 - -1.1 57,065 - +1.4 57,095 + +1.8 57,245 - PGA1_262p00500 0.11 -1.1 57,296 - PGA1_262p00500 0.15 +0.8 57,296 - PGA1_262p00500 0.15 -1.4 57,331 + PGA1_262p00500 0.17 -0.2 57,331 + PGA1_262p00500 0.17 -1.9 57,339 - PGA1_262p00500 0.17 -0.7 57,376 - PGA1_262p00500 0.20 -1.9 57,390 - PGA1_262p00500 0.21 +0.6 57,531 + PGA1_262p00500 0.30 -0.9 57,560 + PGA1_262p00500 0.32 +0.1 57,571 + PGA1_262p00500 0.32 -2.1 57,579 - PGA1_262p00500 0.33 +1.0 57,693 - PGA1_262p00500 0.40 -1.0 57,871 + PGA1_262p00500 0.52 -3.3 57,879 - PGA1_262p00500 0.52 +1.1 58,043 - PGA1_262p00500 0.63 +0.6 58,045 + PGA1_262p00500 0.63 -1.0 58,081 - PGA1_262p00500 0.65 -0.7 58,081 - PGA1_262p00500 0.65 -0.2 58,081 - PGA1_262p00500 0.65 +0.5 58,117 + PGA1_262p00500 0.67 -0.3 58,150 - PGA1_262p00500 0.69 -0.7 58,193 + PGA1_262p00500 0.72 -0.6 58,239 - PGA1_262p00500 0.75 +1.1 58,300 + PGA1_262p00500 0.79 +0.4 58,373 - PGA1_262p00500 0.84 +0.1 58,487 + +0.4 58,515 + +0.9 58,583 + +1.5 58,771 - PGA1_262p00510 0.14 +0.9 58,776 - PGA1_262p00510 0.15 +0.9 58,776 - PGA1_262p00510 0.15 -0.3 58,815 - PGA1_262p00510 0.19 +0.1 58,915 - PGA1_262p00510 0.29 -1.0 58,923 + PGA1_262p00510 0.29 +0.5 59,107 - PGA1_262p00510 0.48 -1.1 59,342 + PGA1_262p00510 0.71 +1.1 59,348 - PGA1_262p00510 0.71 +0.8 59,348 - PGA1_262p00510 0.71 -0.7 59,374 + PGA1_262p00510 0.74 -0.7 59,374 + PGA1_262p00510 0.74 -1.2 59,437 - PGA1_262p00510 0.80 -1.3 59,482 - PGA1_262p00510 0.85 -0.4 59,515 + PGA1_262p00510 0.88 +0.7 59,559 + -0.8 59,590 - -0.1
Or see this region's nucleotide sequence