Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35820

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
3,751,203	-		PGA1_c35790	0.47	+0.6
3,751,253	+		PGA1_c35790	0.54	+1.2
3,751,253	+		PGA1_c35790	0.54	+0.2
3,751,293	-		PGA1_c35790	0.60	-1.6
3,751,307	-		PGA1_c35790	0.62	-0.1
3,751,344	+		PGA1_c35790	0.67	+1.7
3,751,344	+		PGA1_c35790	0.67	+1.8
3,751,345	+		PGA1_c35790	0.67	+0.8
3,751,345	+		PGA1_c35790	0.67	+1.0
3,751,345	+		PGA1_c35790	0.67	+1.5
3,751,353	-		PGA1_c35790	0.68	+0.4
3,751,353	-		PGA1_c35790	0.68	+1.9
3,751,353	-		PGA1_c35790	0.68	+1.4
3,751,353	-		PGA1_c35790	0.68	+1.2
3,751,353	-		PGA1_c35790	0.68	+0.9
3,751,374	-		PGA1_c35790	0.71	+0.7
3,751,374	-		PGA1_c35790	0.71	+1.1
3,751,374	-		PGA1_c35790	0.71	+2.2
3,751,431	-		PGA1_c35790	0.79	-1.4
3,751,446	+		PGA1_c35790	0.81	+0.0
3,751,446	+		PGA1_c35790	0.81	+0.5
3,751,470	-		PGA1_c35790	0.84	+0.5
3,751,479	+		PGA1_c35790	0.86	+0.8
3,751,482	+		PGA1_c35790	0.86	-0.6
3,751,542	-				+2.0
3,751,542	-				+0.3
3,751,542	-				+1.0
3,751,542	-				-1.9
3,751,542	-				-0.3
3,751,542	-				-0.2
3,751,560	-				+1.7
3,751,565	-				+1.1
3,751,569	-				-1.3
3,751,578	+				+0.9
3,751,581	+				+0.8
3,751,591	+				-0.9
3,751,607	+				+1.2
3,751,630	+		PGA1_c35800	0.18	+1.3
3,751,638	-		PGA1_c35800	0.21	+1.7
3,751,651	+		PGA1_c35800	0.26	-0.8
3,751,696	+		PGA1_c35800	0.42	+2.3
3,751,696	-		PGA1_c35800	0.42	+0.8
3,751,709	-		PGA1_c35800	0.47	+1.8
3,751,732	+		PGA1_c35800	0.55	+0.6
3,751,732	+		PGA1_c35800	0.55	+0.8
3,751,732	+		PGA1_c35800	0.55	-0.8
3,751,742	+		PGA1_c35800	0.59	+1.7
3,751,888	+		PGA1_c35810	0.10	+1.3
3,751,897	-		PGA1_c35810	0.13	+1.2
3,751,944	+		PGA1_c35810	0.29	-0.4
3,751,960	-		PGA1_c35810	0.34	+1.9
3,752,005	-		PGA1_c35810	0.49	+0.4
3,752,061	+		PGA1_c35810	0.68	-3.1
3,752,061	+		PGA1_c35810	0.68	+1.6
3,752,061	+		PGA1_c35810	0.68	-0.1
3,752,095	-		PGA1_c35810	0.80	+0.1
3,752,095	-		PGA1_c35810	0.80	+3.1
3,752,121	+		PGA1_c35810	0.89	+1.9
3,752,131	+				+0.2
3,752,134	+				-0.2
3,752,254	+		PGA1_c35820	0.14	+0.6
3,752,254	-		PGA1_c35820	0.14	+1.4
3,752,277	+		PGA1_c35820	0.20	-0.6
3,752,285	-		PGA1_c35820	0.22	+1.4
3,752,360	+		PGA1_c35820	0.41	+0.2
3,752,395	-		PGA1_c35820	0.50	+0.7
3,752,395	-		PGA1_c35820	0.50	+1.8
3,752,395	-		PGA1_c35820	0.50	+0.4
3,752,397	+		PGA1_c35820	0.50	+0.8
3,752,413	-		PGA1_c35820	0.54	-0.1
3,752,416	+		PGA1_c35820	0.55	-0.8
3,752,418	-		PGA1_c35820	0.56	+1.6
3,752,455	+		PGA1_c35820	0.65	+1.1
3,752,456	+		PGA1_c35820	0.65	+1.0
3,752,470	+		PGA1_c35820	0.69	+1.9
3,752,472	-		PGA1_c35820	0.69	+1.8
3,752,483	+		PGA1_c35820	0.72	+0.7
3,752,483	+		PGA1_c35820	0.72	+1.1
3,752,483	+		PGA1_c35820	0.72	-0.4
3,752,483	+		PGA1_c35820	0.72	-0.5
3,752,483	+		PGA1_c35820	0.72	+0.6
3,752,486	-		PGA1_c35820	0.73	+0.5
3,752,491	-		PGA1_c35820	0.74	+1.0
3,752,491	-		PGA1_c35820	0.74	+1.0
3,752,543	-		PGA1_c35820	0.88	+0.1
3,752,543	-		PGA1_c35820	0.88	+0.2
3,752,602	+				+1.6
3,752,602	+				+0.7
3,752,602	+				+1.1
3,752,610	-				+0.6
3,752,610	-				+0.9
3,752,610	-				-0.2
3,752,617	+				-0.9
3,752,620	-				+0.6
3,752,620	-				+1.0
3,752,625	+				+1.3
3,752,633	-				-0.5
3,752,684	+		PGA1_c35830	0.21	+0.3
3,752,684	+		PGA1_c35830	0.21	+0.9
3,752,692	-		PGA1_c35830	0.23	+2.9
3,752,692	-		PGA1_c35830	0.23	+1.2
3,752,722	+		PGA1_c35830	0.30	+0.8
3,752,764	+		PGA1_c35830	0.41	+1.0
3,752,769	+		PGA1_c35830	0.42	+0.4
3,752,769	+		PGA1_c35830	0.42	+1.5
3,752,769	+		PGA1_c35830	0.42	+0.3
3,752,769	+		PGA1_c35830	0.42	+1.1
3,752,772	-		PGA1_c35830	0.43	+1.3
3,752,772	-		PGA1_c35830	0.43	+1.2
3,752,772	-		PGA1_c35830	0.43	+1.0
3,752,777	-		PGA1_c35830	0.44	+0.5
3,752,777	-		PGA1_c35830	0.44	+1.5
3,752,843	+		PGA1_c35830	0.61	+0.7
3,752,863	+		PGA1_c35830	0.66	+0.3
3,752,863	+		PGA1_c35830	0.66	+3.0
3,752,863	+		PGA1_c35830	0.66	+0.9
3,752,863	+		PGA1_c35830	0.66	+1.4
3,752,871	-		PGA1_c35830	0.68	-0.1
3,752,871	-		PGA1_c35830	0.68	+0.9
3,752,871	-		PGA1_c35830	0.68	+1.8
3,752,905	+		PGA1_c35830	0.77	+1.5
3,752,907	-		PGA1_c35830	0.78	+0.2
3,752,920	+		PGA1_c35830	0.81	+0.4
3,752,931	+		PGA1_c35830	0.84	+0.8
3,752,931	+		PGA1_c35830	0.84	-1.1
3,752,951	+		PGA1_c35830	0.89	+1.7
3,752,999	-				+1.0
3,753,025	+				-1.3
3,753,063	+				+0.1
3,753,063	+				+0.9
3,753,063	+				-0.5
3,753,071	-				+0.8
3,753,071	-				-0.6
3,753,073	+				-0.1
3,753,073	+				+0.7
3,753,073	+				+1.7
3,753,073	-				-0.9
3,753,073	-				-0.2
3,753,073	-				+1.2
3,753,075	+				-0.5
3,753,081	-				-1.0
3,753,081	-				+0.6
3,753,139	+				+0.1
3,753,196	+				+0.4
3,753,330	-		PGA1_c35840	0.19	-1.8
3,753,369	+		PGA1_c35840	0.22	-0.7
3,753,369	+		PGA1_c35840	0.22	-2.4
3,753,420	-		PGA1_c35840	0.25	-0.1
3,753,420	-		PGA1_c35840	0.25	+1.1
3,753,479	-		PGA1_c35840	0.30	+0.4
3,753,518	+		PGA1_c35840	0.33	+1.3
3,753,518	+		PGA1_c35840	0.33	+1.3
3,753,518	+		PGA1_c35840	0.33	+1.0
3,753,581	+		PGA1_c35840	0.38	+1.5
3,753,581	+		PGA1_c35840	0.38	+0.4
3,753,581	+		PGA1_c35840	0.38	+0.4
3,753,581	+		PGA1_c35840	0.38	+1.3
3,753,581	+		PGA1_c35840	0.38	-0.2
3,753,589	-		PGA1_c35840	0.38	+0.5
3,753,589	-		PGA1_c35840	0.38	+1.5