Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35680

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c35660 and PGA1_c35670 overlap by 1 nucleotidesPGA1_c35670 and PGA1_c35680 are separated by 77 nucleotidesPGA1_c35680 and PGA1_c35690 overlap by 1 nucleotides PGA1_c35660: PGA1_c35660 - hypothetical protein, at 3,738,529 to 3,738,993 _c35660 PGA1_c35670: PGA1_c35670 - Uncharacterized conserved protein, at 3,738,993 to 3,739,640 _c35670 PGA1_c35680: PGA1_c35680 - chemotaxis protein MotA, at 3,739,718 to 3,740,587 _c35680 PGA1_c35690: PGA1_c35690 - hypothetical protein, at 3,740,587 to 3,743,043 _c35690 Position (kb) 3739 3740 3741Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3738.730 kb on + strand, within PGA1_c35660at 3738.730 kb on + strand, within PGA1_c35660at 3738.733 kb on - strand, within PGA1_c35660at 3738.773 kb on + strand, within PGA1_c35660at 3738.906 kb on + strand, within PGA1_c35660at 3738.924 kb on + strand, within PGA1_c35660at 3738.954 kb on - strandat 3738.978 kb on + strandat 3738.978 kb on + strandat 3738.978 kb on + strandat 3738.978 kb on + strandat 3738.978 kb on + strandat 3738.978 kb on + strandat 3738.978 kb on + strandat 3738.995 kb on + strandat 3739.076 kb on + strand, within PGA1_c35670at 3739.094 kb on + strand, within PGA1_c35670at 3739.150 kb on - strand, within PGA1_c35670at 3739.258 kb on + strand, within PGA1_c35670at 3739.258 kb on + strand, within PGA1_c35670at 3739.347 kb on + strand, within PGA1_c35670at 3739.348 kb on + strand, within PGA1_c35670at 3739.349 kb on + strand, within PGA1_c35670at 3739.371 kb on - strand, within PGA1_c35670at 3739.373 kb on + strand, within PGA1_c35670at 3739.419 kb on + strand, within PGA1_c35670at 3739.428 kb on + strand, within PGA1_c35670at 3739.428 kb on + strand, within PGA1_c35670at 3739.428 kb on + strand, within PGA1_c35670at 3739.436 kb on - strand, within PGA1_c35670at 3739.460 kb on + strand, within PGA1_c35670at 3739.468 kb on - strand, within PGA1_c35670at 3739.500 kb on + strand, within PGA1_c35670at 3739.500 kb on + strand, within PGA1_c35670at 3739.508 kb on - strand, within PGA1_c35670at 3739.563 kb on + strand, within PGA1_c35670at 3739.602 kb on + strandat 3739.609 kb on - strandat 3739.616 kb on + strandat 3739.621 kb on + strandat 3739.626 kb on + strandat 3739.626 kb on + strandat 3739.626 kb on + strandat 3739.629 kb on - strandat 3739.634 kb on + strandat 3739.634 kb on + strandat 3739.634 kb on + strandat 3739.637 kb on - strandat 3739.642 kb on - strandat 3739.712 kb on + strandat 3739.720 kb on - strandat 3739.725 kb on + strandat 3739.739 kb on + strandat 3739.759 kb on + strandat 3739.774 kb on - strandat 3739.781 kb on + strandat 3739.781 kb on + strandat 3739.801 kb on + strandat 3739.801 kb on + strandat 3739.801 kb on + strandat 3739.801 kb on + strandat 3739.839 kb on + strand, within PGA1_c35680at 3739.847 kb on + strand, within PGA1_c35680at 3739.855 kb on - strand, within PGA1_c35680at 3739.855 kb on - strand, within PGA1_c35680at 3739.881 kb on + strand, within PGA1_c35680at 3739.881 kb on + strand, within PGA1_c35680at 3739.881 kb on + strand, within PGA1_c35680at 3739.889 kb on - strand, within PGA1_c35680at 3739.889 kb on - strand, within PGA1_c35680at 3739.915 kb on + strand, within PGA1_c35680at 3739.921 kb on - strand, within PGA1_c35680at 3739.921 kb on - strand, within PGA1_c35680at 3739.923 kb on - strand, within PGA1_c35680at 3739.963 kb on - strand, within PGA1_c35680at 3739.978 kb on + strand, within PGA1_c35680at 3740.093 kb on - strand, within PGA1_c35680at 3740.154 kb on - strand, within PGA1_c35680at 3740.154 kb on - strand, within PGA1_c35680at 3740.154 kb on - strand, within PGA1_c35680at 3740.198 kb on + strand, within PGA1_c35680at 3740.208 kb on - strand, within PGA1_c35680at 3740.232 kb on + strand, within PGA1_c35680at 3740.245 kb on + strand, within PGA1_c35680at 3740.317 kb on - strand, within PGA1_c35680at 3740.331 kb on - strand, within PGA1_c35680at 3740.385 kb on - strand, within PGA1_c35680at 3740.398 kb on + strand, within PGA1_c35680at 3740.411 kb on + strand, within PGA1_c35680at 3740.411 kb on + strand, within PGA1_c35680at 3740.498 kb on - strand, within PGA1_c35680at 3740.514 kb on + strandat 3740.514 kb on + strandat 3740.514 kb on + strandat 3740.522 kb on - strandat 3740.582 kb on + strandat 3740.590 kb on - strandat 3740.603 kb on + strandat 3740.604 kb on - strandat 3740.619 kb on - strandat 3740.624 kb on - strandat 3740.624 kb on - strandat 3740.648 kb on - strandat 3740.650 kb on + strandat 3740.650 kb on + strandat 3740.708 kb on - strandat 3740.715 kb on + strandat 3740.766 kb on + strandat 3740.828 kb on - strandat 3740.838 kb on + strand, within PGA1_c35690at 3740.838 kb on + strand, within PGA1_c35690at 3740.838 kb on + strand, within PGA1_c35690at 3740.838 kb on + strand, within PGA1_c35690at 3740.846 kb on - strand, within PGA1_c35690at 3740.862 kb on - strand, within PGA1_c35690at 3740.902 kb on - strand, within PGA1_c35690at 3740.907 kb on - strand, within PGA1_c35690at 3740.948 kb on + strand, within PGA1_c35690at 3740.948 kb on + strand, within PGA1_c35690at 3740.958 kb on + strand, within PGA1_c35690at 3740.958 kb on + strand, within PGA1_c35690at 3740.958 kb on + strand, within PGA1_c35690at 3740.958 kb on + strand, within PGA1_c35690at 3740.961 kb on - strand, within PGA1_c35690at 3741.044 kb on + strand, within PGA1_c35690at 3741.100 kb on + strand, within PGA1_c35690at 3741.138 kb on + strand, within PGA1_c35690at 3741.169 kb on + strand, within PGA1_c35690at 3741.177 kb on - strand, within PGA1_c35690at 3741.234 kb on + strand, within PGA1_c35690at 3741.263 kb on + strand, within PGA1_c35690at 3741.278 kb on + strand, within PGA1_c35690at 3741.278 kb on + strand, within PGA1_c35690at 3741.278 kb on + strand, within PGA1_c35690at 3741.398 kb on - strand, within PGA1_c35690at 3741.422 kb on - strand, within PGA1_c35690at 3741.429 kb on - strand, within PGA1_c35690at 3741.444 kb on - strand, within PGA1_c35690at 3741.444 kb on - strand, within PGA1_c35690at 3741.496 kb on - strand, within PGA1_c35690at 3741.496 kb on - strand, within PGA1_c35690at 3741.499 kb on - strand, within PGA1_c35690at 3741.527 kb on + strand, within PGA1_c35690at 3741.527 kb on + strand, within PGA1_c35690at 3741.535 kb on - strand, within PGA1_c35690at 3741.535 kb on - strand, within PGA1_c35690at 3741.536 kb on + strand, within PGA1_c35690at 3741.536 kb on + strand, within PGA1_c35690at 3741.544 kb on - strand, within PGA1_c35690at 3741.544 kb on - strand, within PGA1_c35690at 3741.544 kb on - strand, within PGA1_c35690at 3741.544 kb on - strand, within PGA1_c35690at 3741.544 kb on - strand, within PGA1_c35690at 3741.544 kb on - strand, within PGA1_c35690at 3741.566 kb on + strand, within PGA1_c35690

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,738,730 + PGA1_c35660 0.43 +0.8
3,738,730 + PGA1_c35660 0.43 +1.4
3,738,733 - PGA1_c35660 0.44 +1.9
3,738,773 + PGA1_c35660 0.52 +1.5
3,738,906 + PGA1_c35660 0.81 +2.7
3,738,924 + PGA1_c35660 0.85 +1.8
3,738,954 - +0.5
3,738,978 + +1.2
3,738,978 + -1.2
3,738,978 + +0.5
3,738,978 + +0.3
3,738,978 + +0.0
3,738,978 + +0.3
3,738,978 + +1.5
3,738,995 + -0.0
3,739,076 + PGA1_c35670 0.13 +3.0
3,739,094 + PGA1_c35670 0.16 +0.9
3,739,150 - PGA1_c35670 0.24 -2.9
3,739,258 + PGA1_c35670 0.41 +1.1
3,739,258 + PGA1_c35670 0.41 +0.4
3,739,347 + PGA1_c35670 0.55 +1.9
3,739,348 + PGA1_c35670 0.55 +2.3
3,739,349 + PGA1_c35670 0.55 +1.3
3,739,371 - PGA1_c35670 0.58 +1.7
3,739,373 + PGA1_c35670 0.59 +2.8
3,739,419 + PGA1_c35670 0.66 -0.6
3,739,428 + PGA1_c35670 0.67 -1.1
3,739,428 + PGA1_c35670 0.67 -1.4
3,739,428 + PGA1_c35670 0.67 +1.2
3,739,436 - PGA1_c35670 0.68 +1.3
3,739,460 + PGA1_c35670 0.72 +1.7
3,739,468 - PGA1_c35670 0.73 +0.6
3,739,500 + PGA1_c35670 0.78 -0.7
3,739,500 + PGA1_c35670 0.78 +0.8
3,739,508 - PGA1_c35670 0.79 +0.9
3,739,563 + PGA1_c35670 0.88 +1.5
3,739,602 + -0.1
3,739,609 - -0.2
3,739,616 + +2.3
3,739,621 + +1.5
3,739,626 + +1.4
3,739,626 + +1.1
3,739,626 + +0.0
3,739,629 - -1.2
3,739,634 + +1.3
3,739,634 + +0.7
3,739,634 + -1.5
3,739,637 - +1.0
3,739,642 - +0.5
3,739,712 + +0.9
3,739,720 - +0.8
3,739,725 + -2.1
3,739,739 + +0.7
3,739,759 + +0.0
3,739,774 - -0.7
3,739,781 + +0.7
3,739,781 + +2.1
3,739,801 + +0.3
3,739,801 + -1.5
3,739,801 + -0.1
3,739,801 + +0.0
3,739,839 + PGA1_c35680 0.14 -0.8
3,739,847 + PGA1_c35680 0.15 +1.8
3,739,855 - PGA1_c35680 0.16 +2.8
3,739,855 - PGA1_c35680 0.16 +0.8
3,739,881 + PGA1_c35680 0.19 -0.9
3,739,881 + PGA1_c35680 0.19 +1.1
3,739,881 + PGA1_c35680 0.19 +1.4
3,739,889 - PGA1_c35680 0.20 +2.3
3,739,889 - PGA1_c35680 0.20 +0.3
3,739,915 + PGA1_c35680 0.23 -1.2
3,739,921 - PGA1_c35680 0.23 +2.3
3,739,921 - PGA1_c35680 0.23 -0.6
3,739,923 - PGA1_c35680 0.24 +1.4
3,739,963 - PGA1_c35680 0.28 -1.2
3,739,978 + PGA1_c35680 0.30 +1.1
3,740,093 - PGA1_c35680 0.43 -0.7
3,740,154 - PGA1_c35680 0.50 -0.2
3,740,154 - PGA1_c35680 0.50 +0.9
3,740,154 - PGA1_c35680 0.50 +0.2
3,740,198 + PGA1_c35680 0.55 +1.8
3,740,208 - PGA1_c35680 0.56 -0.8
3,740,232 + PGA1_c35680 0.59 +0.1
3,740,245 + PGA1_c35680 0.61 +1.1
3,740,317 - PGA1_c35680 0.69 +1.6
3,740,331 - PGA1_c35680 0.70 +0.9
3,740,385 - PGA1_c35680 0.77 +1.1
3,740,398 + PGA1_c35680 0.78 +1.5
3,740,411 + PGA1_c35680 0.80 -1.1
3,740,411 + PGA1_c35680 0.80 +0.4
3,740,498 - PGA1_c35680 0.90 +1.3
3,740,514 + +1.3
3,740,514 + +0.8
3,740,514 + -0.6
3,740,522 - +2.8
3,740,582 + +1.7
3,740,590 - +1.9
3,740,603 + +0.9
3,740,604 - +0.8
3,740,619 - +0.4
3,740,624 - -0.0
3,740,624 - -0.1
3,740,648 - -0.1
3,740,650 + +1.0
3,740,650 + -2.0
3,740,708 - -0.9
3,740,715 + +1.0
3,740,766 + -0.8
3,740,828 - -2.6
3,740,838 + PGA1_c35690 0.10 +0.7
3,740,838 + PGA1_c35690 0.10 -0.2
3,740,838 + PGA1_c35690 0.10 -0.0
3,740,838 + PGA1_c35690 0.10 +1.5
3,740,846 - PGA1_c35690 0.11 -0.2
3,740,862 - PGA1_c35690 0.11 -0.8
3,740,902 - PGA1_c35690 0.13 +1.2
3,740,907 - PGA1_c35690 0.13 +0.5
3,740,948 + PGA1_c35690 0.15 +1.5
3,740,948 + PGA1_c35690 0.15 +0.4
3,740,958 + PGA1_c35690 0.15 +1.1
3,740,958 + PGA1_c35690 0.15 +1.3
3,740,958 + PGA1_c35690 0.15 +0.9
3,740,958 + PGA1_c35690 0.15 -1.9
3,740,961 - PGA1_c35690 0.15 +0.9
3,741,044 + PGA1_c35690 0.19 +1.3
3,741,100 + PGA1_c35690 0.21 +0.5
3,741,138 + PGA1_c35690 0.22 -0.3
3,741,169 + PGA1_c35690 0.24 -1.1
3,741,177 - PGA1_c35690 0.24 +1.7
3,741,234 + PGA1_c35690 0.26 +0.8
3,741,263 + PGA1_c35690 0.28 +0.8
3,741,278 + PGA1_c35690 0.28 +1.4
3,741,278 + PGA1_c35690 0.28 +1.9
3,741,278 + PGA1_c35690 0.28 +0.8
3,741,398 - PGA1_c35690 0.33 +2.6
3,741,422 - PGA1_c35690 0.34 +1.0
3,741,429 - PGA1_c35690 0.34 +1.1
3,741,444 - PGA1_c35690 0.35 +0.4
3,741,444 - PGA1_c35690 0.35 +0.1
3,741,496 - PGA1_c35690 0.37 -1.1
3,741,496 - PGA1_c35690 0.37 +0.2
3,741,499 - PGA1_c35690 0.37 +0.6
3,741,527 + PGA1_c35690 0.38 +0.1
3,741,527 + PGA1_c35690 0.38 +0.1
3,741,535 - PGA1_c35690 0.39 -0.1
3,741,535 - PGA1_c35690 0.39 +2.2
3,741,536 + PGA1_c35690 0.39 +0.5
3,741,536 + PGA1_c35690 0.39 +1.0
3,741,544 - PGA1_c35690 0.39 -0.2
3,741,544 - PGA1_c35690 0.39 -3.2
3,741,544 - PGA1_c35690 0.39 +1.0
3,741,544 - PGA1_c35690 0.39 +0.8
3,741,544 - PGA1_c35690 0.39 +1.9
3,741,544 - PGA1_c35690 0.39 +0.3
3,741,566 + PGA1_c35690 0.40 -0.5

Or see this region's nucleotide sequence