Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3228 and HP15_3229 are separated by 115 nucleotides HP15_3229 and HP15_3230 overlap by 4 nucleotides HP15_3230 and HP15_3231 overlap by 8 nucleotides
HP15_3228: HP15_3228 - phosphoribosylamine-glycine ligase, at 3,380,803 to 3,382,089
_3228
HP15_3229: HP15_3229 - abhydrolase domain-containing protein 6, at 3,382,205 to 3,383,143
_3229
HP15_3230: HP15_3230 - hypothetical protein, at 3,383,140 to 3,383,259
_3230
HP15_3231: HP15_3231 - sodium/hydrogen exchanger, at 3,383,252 to 3,384,826
_3231
Position (kb)
3382
3383
3384 Strain fitness (log2 ratio)
-1
0
1 at 3382.083 kb on + strand at 3382.083 kb on + strand at 3382.091 kb on - strand at 3382.269 kb on + strand at 3382.274 kb on + strand at 3382.297 kb on + strand at 3382.310 kb on - strand, within HP15_3229 at 3382.614 kb on - strand, within HP15_3229 at 3382.755 kb on - strand, within HP15_3229 at 3382.977 kb on - strand, within HP15_3229 at 3383.067 kb on - strand at 3383.073 kb on + strand at 3383.134 kb on + strand at 3383.203 kb on - strand, within HP15_3230 at 3383.205 kb on + strand, within HP15_3230 at 3383.208 kb on - strand, within HP15_3230 at 3383.274 kb on + strand at 3383.403 kb on + strand at 3383.405 kb on + strand at 3383.405 kb on + strand at 3383.430 kb on - strand, within HP15_3231 at 3383.492 kb on - strand, within HP15_3231 at 3383.515 kb on + strand, within HP15_3231 at 3383.519 kb on + strand, within HP15_3231 at 3383.712 kb on - strand, within HP15_3231 at 3383.798 kb on + strand, within HP15_3231
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 3,382,083 + +0.4 3,382,083 + -1.0 3,382,091 - -0.9 3,382,269 + +0.7 3,382,274 + -0.6 3,382,297 + +0.0 3,382,310 - HP15_3229 0.11 +0.0 3,382,614 - HP15_3229 0.44 -0.6 3,382,755 - HP15_3229 0.59 -1.0 3,382,977 - HP15_3229 0.82 -0.2 3,383,067 - -0.2 3,383,073 + +1.0 3,383,134 + -1.3 3,383,203 - HP15_3230 0.53 -0.0 3,383,205 + HP15_3230 0.54 +0.4 3,383,208 - HP15_3230 0.57 -0.1 3,383,274 + -0.2 3,383,403 + -1.2 3,383,405 + -0.4 3,383,405 + -0.8 3,383,430 - HP15_3231 0.11 +0.2 3,383,492 - HP15_3231 0.15 +0.1 3,383,515 + HP15_3231 0.17 -0.3 3,383,519 + HP15_3231 0.17 -0.2 3,383,712 - HP15_3231 0.29 +0.4 3,383,798 + HP15_3231 0.35 -1.5
Or see this region's nucleotide sequence