Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2996 and HP15_2997 are separated by 427 nucleotides HP15_2997 and HP15_2998 overlap by 1 nucleotides
HP15_2996: HP15_2996 - acetyl-CoA acetyltransferase, at 3,139,357 to 3,140,553
_2996
HP15_2997: HP15_2997 - hemin ABC transporter, ATP-binding protein HutD, at 3,140,981 to 3,141,802
_2997
HP15_2998: HP15_2998 - hemin ABC transporter, permease protein, at 3,141,802 to 3,142,839
_2998
Position (kb)
3140
3141
3142 Strain fitness (log2 ratio)
-2
-1
0
1 at 3139.992 kb on + strand, within HP15_2996 at 3139.992 kb on + strand, within HP15_2996 at 3140.050 kb on + strand, within HP15_2996 at 3140.058 kb on - strand, within HP15_2996 at 3140.156 kb on - strand, within HP15_2996 at 3140.273 kb on + strand, within HP15_2996 at 3140.338 kb on + strand, within HP15_2996 at 3140.384 kb on + strand, within HP15_2996 at 3140.494 kb on + strand at 3140.574 kb on - strand at 3140.666 kb on - strand at 3140.713 kb on - strand at 3140.735 kb on - strand at 3140.947 kb on + strand at 3141.024 kb on + strand at 3141.042 kb on - strand at 3141.054 kb on + strand at 3141.055 kb on + strand at 3141.099 kb on - strand, within HP15_2997 at 3141.116 kb on - strand, within HP15_2997 at 3141.116 kb on - strand, within HP15_2997 at 3141.126 kb on - strand, within HP15_2997 at 3141.208 kb on + strand, within HP15_2997 at 3141.208 kb on + strand, within HP15_2997 at 3141.340 kb on + strand, within HP15_2997 at 3141.348 kb on - strand, within HP15_2997 at 3141.348 kb on - strand, within HP15_2997 at 3141.348 kb on - strand, within HP15_2997 at 3141.399 kb on + strand, within HP15_2997 at 3141.399 kb on + strand, within HP15_2997 at 3141.407 kb on - strand, within HP15_2997 at 3141.483 kb on - strand, within HP15_2997 at 3141.495 kb on + strand, within HP15_2997 at 3141.568 kb on - strand, within HP15_2997 at 3141.663 kb on + strand, within HP15_2997 at 3141.690 kb on + strand, within HP15_2997 at 3141.736 kb on + strand at 3141.756 kb on - strand at 3141.853 kb on - strand at 3141.924 kb on + strand, within HP15_2998 at 3142.025 kb on - strand, within HP15_2998 at 3142.218 kb on + strand, within HP15_2998 at 3142.278 kb on - strand, within HP15_2998 at 3142.394 kb on + strand, within HP15_2998 at 3142.449 kb on - strand, within HP15_2998 at 3142.556 kb on - strand, within HP15_2998 at 3142.559 kb on + strand, within HP15_2998 at 3142.566 kb on - strand, within HP15_2998
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 3,139,992 + HP15_2996 0.53 +0.3 3,139,992 + HP15_2996 0.53 +0.6 3,140,050 + HP15_2996 0.58 -0.1 3,140,058 - HP15_2996 0.59 -2.0 3,140,156 - HP15_2996 0.67 -1.5 3,140,273 + HP15_2996 0.77 +0.6 3,140,338 + HP15_2996 0.82 -0.3 3,140,384 + HP15_2996 0.86 -1.4 3,140,494 + +0.5 3,140,574 - -1.5 3,140,666 - +1.0 3,140,713 - -0.5 3,140,735 - -1.8 3,140,947 + -2.3 3,141,024 + -0.8 3,141,042 - +0.1 3,141,054 + -1.1 3,141,055 + +0.1 3,141,099 - HP15_2997 0.14 +0.0 3,141,116 - HP15_2997 0.16 -1.0 3,141,116 - HP15_2997 0.16 +0.1 3,141,126 - HP15_2997 0.18 -0.8 3,141,208 + HP15_2997 0.28 +0.6 3,141,208 + HP15_2997 0.28 -0.0 3,141,340 + HP15_2997 0.44 +0.7 3,141,348 - HP15_2997 0.45 +0.5 3,141,348 - HP15_2997 0.45 +1.5 3,141,348 - HP15_2997 0.45 -0.2 3,141,399 + HP15_2997 0.51 +0.5 3,141,399 + HP15_2997 0.51 +0.7 3,141,407 - HP15_2997 0.52 +0.0 3,141,483 - HP15_2997 0.61 +0.8 3,141,495 + HP15_2997 0.63 +0.2 3,141,568 - HP15_2997 0.71 +0.3 3,141,663 + HP15_2997 0.83 +0.3 3,141,690 + HP15_2997 0.86 +0.0 3,141,736 + -1.0 3,141,756 - +0.3 3,141,853 - -0.4 3,141,924 + HP15_2998 0.12 +0.1 3,142,025 - HP15_2998 0.21 -1.0 3,142,218 + HP15_2998 0.40 -0.2 3,142,278 - HP15_2998 0.46 +0.5 3,142,394 + HP15_2998 0.57 +0.2 3,142,449 - HP15_2998 0.62 -1.0 3,142,556 - HP15_2998 0.73 +0.4 3,142,559 + HP15_2998 0.73 +0.0 3,142,566 - HP15_2998 0.74 -1.5
Or see this region's nucleotide sequence