Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2925 and HP15_2926 are separated by 29 nucleotides HP15_2926 and HP15_2927 are separated by 119 nucleotides HP15_2927 and HP15_2928 are separated by 110 nucleotides
HP15_2925: HP15_2925 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,063,695 to 3,065,047
_2925
HP15_2926: HP15_2926 - ribosomal RNA small subunit methyltransferase E, at 3,065,077 to 3,065,811
_2926
HP15_2927: HP15_2927 - conserved hypothetical protein, membrane, at 3,065,931 to 3,067,160
_2927
HP15_2928: HP15_2928 - signal transduction protein, at 3,067,271 to 3,068,320
_2928
Position (kb)
3065
3066
3067
3068 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3064.950 kb on - strand at 3065.021 kb on + strand at 3065.022 kb on + strand at 3065.029 kb on - strand at 3065.029 kb on - strand at 3065.088 kb on - strand at 3065.094 kb on - strand at 3065.118 kb on + strand at 3065.118 kb on + strand at 3065.137 kb on + strand at 3065.193 kb on - strand, within HP15_2926 at 3065.279 kb on - strand, within HP15_2926 at 3065.330 kb on - strand, within HP15_2926 at 3065.337 kb on - strand, within HP15_2926 at 3065.352 kb on + strand, within HP15_2926 at 3065.396 kb on - strand, within HP15_2926 at 3065.430 kb on + strand, within HP15_2926 at 3065.497 kb on - strand, within HP15_2926 at 3065.560 kb on - strand, within HP15_2926 at 3065.877 kb on + strand at 3065.886 kb on - strand at 3066.035 kb on + strand at 3066.146 kb on + strand, within HP15_2927 at 3066.154 kb on - strand, within HP15_2927 at 3066.199 kb on + strand, within HP15_2927 at 3066.472 kb on - strand, within HP15_2927 at 3066.506 kb on - strand, within HP15_2927 at 3066.523 kb on + strand, within HP15_2927 at 3066.583 kb on + strand, within HP15_2927 at 3066.779 kb on + strand, within HP15_2927 at 3066.779 kb on + strand, within HP15_2927 at 3066.779 kb on + strand, within HP15_2927 at 3066.787 kb on - strand, within HP15_2927 at 3066.787 kb on - strand, within HP15_2927 at 3066.787 kb on - strand, within HP15_2927 at 3066.826 kb on - strand, within HP15_2927 at 3066.851 kb on + strand, within HP15_2927 at 3066.882 kb on + strand, within HP15_2927 at 3066.945 kb on + strand, within HP15_2927 at 3066.953 kb on - strand, within HP15_2927 at 3066.977 kb on + strand, within HP15_2927 at 3066.977 kb on + strand, within HP15_2927 at 3067.018 kb on - strand, within HP15_2927 at 3067.020 kb on - strand, within HP15_2927 at 3067.131 kb on + strand at 3067.210 kb on + strand at 3067.210 kb on + strand at 3067.356 kb on - strand at 3067.395 kb on + strand, within HP15_2928 at 3067.468 kb on - strand, within HP15_2928 at 3067.503 kb on + strand, within HP15_2928 at 3067.583 kb on + strand, within HP15_2928 at 3067.675 kb on - strand, within HP15_2928 at 3067.737 kb on + strand, within HP15_2928 at 3067.814 kb on - strand, within HP15_2928 at 3067.841 kb on + strand, within HP15_2928 at 3067.841 kb on + strand, within HP15_2928 at 3067.841 kb on + strand, within HP15_2928 at 3067.841 kb on + strand, within HP15_2928 at 3067.849 kb on - strand, within HP15_2928 at 3067.906 kb on + strand, within HP15_2928 at 3068.051 kb on - strand, within HP15_2928
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 3,064,950 - -0.7 3,065,021 + +1.2 3,065,022 + +0.2 3,065,029 - -0.1 3,065,029 - -1.6 3,065,088 - +0.1 3,065,094 - +0.5 3,065,118 + +0.8 3,065,118 + +0.5 3,065,137 + -0.5 3,065,193 - HP15_2926 0.16 +0.3 3,065,279 - HP15_2926 0.27 +0.4 3,065,330 - HP15_2926 0.34 +0.7 3,065,337 - HP15_2926 0.35 -0.1 3,065,352 + HP15_2926 0.37 -0.3 3,065,396 - HP15_2926 0.43 -0.2 3,065,430 + HP15_2926 0.48 +0.3 3,065,497 - HP15_2926 0.57 -0.1 3,065,560 - HP15_2926 0.66 +0.9 3,065,877 + -1.2 3,065,886 - +1.8 3,066,035 + +3.0 3,066,146 + HP15_2927 0.17 +1.6 3,066,154 - HP15_2927 0.18 +0.8 3,066,199 + HP15_2927 0.22 -1.2 3,066,472 - HP15_2927 0.44 +0.7 3,066,506 - HP15_2927 0.47 +0.3 3,066,523 + HP15_2927 0.48 +0.5 3,066,583 + HP15_2927 0.53 +0.1 3,066,779 + HP15_2927 0.69 -0.4 3,066,779 + HP15_2927 0.69 +0.6 3,066,779 + HP15_2927 0.69 -0.3 3,066,787 - HP15_2927 0.70 -0.1 3,066,787 - HP15_2927 0.70 +2.3 3,066,787 - HP15_2927 0.70 +0.0 3,066,826 - HP15_2927 0.73 +0.4 3,066,851 + HP15_2927 0.75 +0.0 3,066,882 + HP15_2927 0.77 +1.0 3,066,945 + HP15_2927 0.82 -2.0 3,066,953 - HP15_2927 0.83 +2.3 3,066,977 + HP15_2927 0.85 +1.5 3,066,977 + HP15_2927 0.85 +0.9 3,067,018 - HP15_2927 0.88 +0.5 3,067,020 - HP15_2927 0.89 -0.3 3,067,131 + +0.3 3,067,210 + +0.1 3,067,210 + -0.3 3,067,356 - -0.4 3,067,395 + HP15_2928 0.12 +1.0 3,067,468 - HP15_2928 0.19 +0.6 3,067,503 + HP15_2928 0.22 -0.1 3,067,583 + HP15_2928 0.30 -3.3 3,067,675 - HP15_2928 0.38 -0.8 3,067,737 + HP15_2928 0.44 -0.3 3,067,814 - HP15_2928 0.52 +0.3 3,067,841 + HP15_2928 0.54 -0.6 3,067,841 + HP15_2928 0.54 +0.2 3,067,841 + HP15_2928 0.54 +0.8 3,067,841 + HP15_2928 0.54 +0.5 3,067,849 - HP15_2928 0.55 +0.4 3,067,906 + HP15_2928 0.60 +0.5 3,068,051 - HP15_2928 0.74 +0.5
Or see this region's nucleotide sequence