Strain Fitness in Marinobacter adhaerens HP15 around HP15_1886

Experiment: m.b. Vanillin 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1885 and HP15_1886 are separated by 348 nucleotidesHP15_1886 and HP15_1887 are separated by 241 nucleotides HP15_1885: HP15_1885 - DNA polymerase III subunits gamma and tau, at 1,988,426 to 1,990,378 _1885 HP15_1886: HP15_1886 - oxidoreductase, 2OG-Fe(II) oxygenase family protein, at 1,990,727 to 1,991,482 _1886 HP15_1887: HP15_1887 - aldose 1-epimerase family protein, at 1,991,724 to 1,992,524 _1887 Position (kb) 1990 1991 1992Strain fitness (log2 ratio) -2 -1 0 1 2at 1990.412 kb on - strandat 1990.468 kb on + strandat 1990.981 kb on + strand, within HP15_1886at 1990.981 kb on + strand, within HP15_1886at 1990.989 kb on - strand, within HP15_1886at 1990.989 kb on - strand, within HP15_1886at 1990.989 kb on - strand, within HP15_1886at 1990.991 kb on + strand, within HP15_1886at 1991.048 kb on - strand, within HP15_1886at 1991.185 kb on + strand, within HP15_1886at 1991.301 kb on - strand, within HP15_1886at 1991.325 kb on + strand, within HP15_1886at 1991.331 kb on - strand, within HP15_1886at 1991.403 kb on - strand, within HP15_1886at 1991.429 kb on + strandat 1991.597 kb on + strandat 1991.640 kb on - strandat 1991.643 kb on + strandat 1991.761 kb on - strandat 1991.761 kb on - strandat 1991.799 kb on + strandat 1991.804 kb on + strand, within HP15_1887at 1991.846 kb on - strand, within HP15_1887at 1991.907 kb on + strand, within HP15_1887at 1991.955 kb on + strand, within HP15_1887at 1991.986 kb on + strand, within HP15_1887at 1991.992 kb on + strand, within HP15_1887at 1992.028 kb on - strand, within HP15_1887at 1992.036 kb on + strand, within HP15_1887at 1992.037 kb on + strand, within HP15_1887at 1992.101 kb on + strand, within HP15_1887at 1992.114 kb on + strand, within HP15_1887at 1992.129 kb on - strand, within HP15_1887at 1992.143 kb on - strand, within HP15_1887at 1992.165 kb on + strand, within HP15_1887at 1992.173 kb on - strand, within HP15_1887at 1992.244 kb on + strand, within HP15_1887at 1992.249 kb on + strand, within HP15_1887at 1992.254 kb on - strand, within HP15_1887at 1992.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM
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1,990,412 - -0.5
1,990,468 + +0.1
1,990,981 + HP15_1886 0.34 +0.9
1,990,981 + HP15_1886 0.34 -0.8
1,990,989 - HP15_1886 0.35 -0.5
1,990,989 - HP15_1886 0.35 -0.1
1,990,989 - HP15_1886 0.35 +2.3
1,990,991 + HP15_1886 0.35 -0.4
1,991,048 - HP15_1886 0.42 +0.4
1,991,185 + HP15_1886 0.61 +2.6
1,991,301 - HP15_1886 0.76 +1.2
1,991,325 + HP15_1886 0.79 +0.7
1,991,331 - HP15_1886 0.80 +2.1
1,991,403 - HP15_1886 0.89 +1.4
1,991,429 + -0.2
1,991,597 + -0.2
1,991,640 - -0.4
1,991,643 + +1.4
1,991,761 - -0.2
1,991,761 - +0.2
1,991,799 + -0.6
1,991,804 + HP15_1887 0.10 +0.6
1,991,846 - HP15_1887 0.15 +0.3
1,991,907 + HP15_1887 0.23 +0.7
1,991,955 + HP15_1887 0.29 -0.8
1,991,986 + HP15_1887 0.33 +0.1
1,991,992 + HP15_1887 0.33 +0.4
1,992,028 - HP15_1887 0.38 -0.4
1,992,036 + HP15_1887 0.39 +0.2
1,992,037 + HP15_1887 0.39 -0.5
1,992,101 + HP15_1887 0.47 -0.3
1,992,114 + HP15_1887 0.49 +0.8
1,992,129 - HP15_1887 0.51 +0.4
1,992,143 - HP15_1887 0.52 -0.0
1,992,165 + HP15_1887 0.55 -0.2
1,992,173 - HP15_1887 0.56 +1.0
1,992,244 + HP15_1887 0.65 -0.2
1,992,249 + HP15_1887 0.66 +0.5
1,992,254 - HP15_1887 0.66 -2.2
1,992,470 + -0.0

Or see this region's nucleotide sequence