Experiment: m.b. Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1885 and HP15_1886 are separated by 348 nucleotides HP15_1886 and HP15_1887 are separated by 241 nucleotides
HP15_1885: HP15_1885 - DNA polymerase III subunits gamma and tau, at 1,988,426 to 1,990,378
_1885
HP15_1886: HP15_1886 - oxidoreductase, 2OG-Fe(II) oxygenase family protein, at 1,990,727 to 1,991,482
_1886
HP15_1887: HP15_1887 - aldose 1-epimerase family protein, at 1,991,724 to 1,992,524
_1887
Position (kb)
1990
1991
1992 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1990.412 kb on - strand at 1990.468 kb on + strand at 1990.981 kb on + strand, within HP15_1886 at 1990.981 kb on + strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.989 kb on - strand, within HP15_1886 at 1990.991 kb on + strand, within HP15_1886 at 1991.048 kb on - strand, within HP15_1886 at 1991.185 kb on + strand, within HP15_1886 at 1991.301 kb on - strand, within HP15_1886 at 1991.325 kb on + strand, within HP15_1886 at 1991.331 kb on - strand, within HP15_1886 at 1991.403 kb on - strand, within HP15_1886 at 1991.429 kb on + strand at 1991.597 kb on + strand at 1991.640 kb on - strand at 1991.643 kb on + strand at 1991.761 kb on - strand at 1991.761 kb on - strand at 1991.799 kb on + strand at 1991.804 kb on + strand, within HP15_1887 at 1991.846 kb on - strand, within HP15_1887 at 1991.907 kb on + strand, within HP15_1887 at 1991.955 kb on + strand, within HP15_1887 at 1991.986 kb on + strand, within HP15_1887 at 1991.992 kb on + strand, within HP15_1887 at 1992.028 kb on - strand, within HP15_1887 at 1992.036 kb on + strand, within HP15_1887 at 1992.037 kb on + strand, within HP15_1887 at 1992.101 kb on + strand, within HP15_1887 at 1992.114 kb on + strand, within HP15_1887 at 1992.129 kb on - strand, within HP15_1887 at 1992.143 kb on - strand, within HP15_1887 at 1992.165 kb on + strand, within HP15_1887 at 1992.173 kb on - strand, within HP15_1887 at 1992.244 kb on + strand, within HP15_1887 at 1992.249 kb on + strand, within HP15_1887 at 1992.254 kb on - strand, within HP15_1887 at 1992.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vanillin 1.25 mM remove 1,990,412 - -0.5 1,990,468 + +0.1 1,990,981 + HP15_1886 0.34 +0.9 1,990,981 + HP15_1886 0.34 -0.8 1,990,989 - HP15_1886 0.35 -0.5 1,990,989 - HP15_1886 0.35 -0.1 1,990,989 - HP15_1886 0.35 +2.3 1,990,991 + HP15_1886 0.35 -0.4 1,991,048 - HP15_1886 0.42 +0.4 1,991,185 + HP15_1886 0.61 +2.6 1,991,301 - HP15_1886 0.76 +1.2 1,991,325 + HP15_1886 0.79 +0.7 1,991,331 - HP15_1886 0.80 +2.1 1,991,403 - HP15_1886 0.89 +1.4 1,991,429 + -0.2 1,991,597 + -0.2 1,991,640 - -0.4 1,991,643 + +1.4 1,991,761 - -0.2 1,991,761 - +0.2 1,991,799 + -0.6 1,991,804 + HP15_1887 0.10 +0.6 1,991,846 - HP15_1887 0.15 +0.3 1,991,907 + HP15_1887 0.23 +0.7 1,991,955 + HP15_1887 0.29 -0.8 1,991,986 + HP15_1887 0.33 +0.1 1,991,992 + HP15_1887 0.33 +0.4 1,992,028 - HP15_1887 0.38 -0.4 1,992,036 + HP15_1887 0.39 +0.2 1,992,037 + HP15_1887 0.39 -0.5 1,992,101 + HP15_1887 0.47 -0.3 1,992,114 + HP15_1887 0.49 +0.8 1,992,129 - HP15_1887 0.51 +0.4 1,992,143 - HP15_1887 0.52 -0.0 1,992,165 + HP15_1887 0.55 -0.2 1,992,173 - HP15_1887 0.56 +1.0 1,992,244 + HP15_1887 0.65 -0.2 1,992,249 + HP15_1887 0.66 +0.5 1,992,254 - HP15_1887 0.66 -2.2 1,992,470 + -0.0
Or see this region's nucleotide sequence